Wall clock time and date at job start Wed Apr 1 2020 04:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47320 * 2 1 4 4 N 1.46502 * 109.47445 * 120.00111 * 2 1 3 5 5 C 1.34777 * 120.00046 * 275.00463 * 4 2 1 6 6 O 1.21279 * 119.99780 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99964 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.50353 * 59.91935 * 7 5 4 9 9 C 1.53113 * 109.53531 * 299.81963 * 7 5 4 10 10 C 1.53123 * 109.14871 * 182.38094 * 9 7 5 11 11 C 1.53033 * 109.28179 * 57.67175 * 10 9 7 12 12 N 1.46848 * 109.51309 * 300.80399 * 11 10 9 13 13 C 1.46897 * 111.00248 * 185.84305 * 12 11 10 14 14 C 1.53004 * 109.47305 * 283.64400 * 13 12 11 15 15 F 1.39896 * 109.47137 * 293.66646 * 14 13 12 16 16 F 1.39903 * 109.46526 * 53.66451 * 14 13 12 17 17 C 1.46848 * 111.19828 * 61.74564 * 12 11 10 18 18 C 1.52997 * 109.47056 * 240.00027 * 2 1 3 19 19 C 1.53947 * 113.74304 * 158.73815 * 18 2 1 20 20 N 1.47815 * 86.03943 * 222.08429 * 19 18 2 21 21 C 1.36932 * 134.45831 * 204.64151 * 20 19 18 22 22 H 1.08000 * 120.00136 * 183.19732 * 21 20 19 23 23 C 1.38814 * 119.99943 * 3.20236 * 21 20 19 24 24 N 1.31624 * 120.00035 * 352.82448 * 23 21 20 25 25 Si 1.86802 * 120.00041 * 172.81909 * 23 21 20 26 26 H 1.48506 * 109.46788 * 94.98254 * 25 23 21 27 27 H 1.48497 * 109.47393 * 214.97848 * 25 23 21 28 28 H 1.48495 * 109.47419 * 334.98187 * 25 23 21 29 29 C 1.47585 * 91.04879 * 24.55110 * 20 19 18 30 30 H 1.09002 * 109.46628 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47155 * 299.99459 * 1 2 3 32 32 H 1.08992 * 109.47055 * 60.00146 * 1 2 3 33 33 H 0.97004 * 119.99880 * 94.99277 * 4 2 1 34 34 H 1.08998 * 109.52047 * 302.28960 * 9 7 5 35 35 H 1.09000 * 109.52404 * 62.48291 * 9 7 5 36 36 H 1.09004 * 109.51239 * 297.72002 * 10 9 7 37 37 H 1.08997 * 109.49195 * 177.60698 * 10 9 7 38 38 H 1.08998 * 109.46239 * 180.79411 * 11 10 9 39 39 H 1.09006 * 109.46248 * 60.80848 * 11 10 9 40 40 H 1.09008 * 109.46989 * 43.64558 * 13 12 11 41 41 H 1.08994 * 109.47444 * 163.64275 * 13 12 11 42 42 H 1.08997 * 109.46844 * 173.66021 * 14 13 12 43 43 H 1.09002 * 109.46241 * 58.27594 * 17 12 11 44 44 H 1.08997 * 109.46204 * 178.24184 * 17 12 11 45 45 H 1.09004 * 112.94892 * 290.33629 * 18 2 1 46 46 H 1.08992 * 113.76745 * 336.35538 * 19 18 2 47 47 H 1.09007 * 113.76969 * 107.74733 * 19 18 2 48 48 H 0.96996 * 120.00011 * 180.02562 * 24 23 21 49 49 H 1.09003 * 113.76666 * 221.15653 * 29 20 19 50 50 H 1.08994 * 113.76750 * 89.75418 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1585 2.4115 7 6 2.6489 -0.7289 3.5877 8 1 3.6476 -1.1228 3.3986 9 6 1.7023 -1.8810 3.9355 10 6 2.1872 -2.5591 5.2199 11 6 2.2522 -1.5234 6.3447 12 7 3.1708 -0.4428 5.9639 13 6 3.3653 0.4986 7.0746 14 6 2.1371 1.4028 7.1979 15 9 2.0445 2.2204 6.0665 16 9 0.9859 0.6142 7.2989 17 6 2.7009 0.2539 4.7597 18 6 2.0400 -0.7212 -1.2492 19 6 3.4847 -0.3520 -1.6317 20 7 2.9978 -0.3176 -3.0269 21 6 3.5874 -0.4756 -4.2527 22 1 3.0038 -0.3505 -5.1528 23 6 4.9351 -0.7966 -4.3384 24 7 5.6787 -0.8107 -3.2524 25 14 5.6936 -1.2089 -5.9950 26 1 6.3108 0.0114 -6.5741 27 1 6.7343 -2.2531 -5.8168 28 1 4.6388 -1.7125 -6.9108 29 6 1.6213 -0.0471 -2.5685 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 0.6954 -1.4920 4.0865 35 1 1.6957 -2.6055 3.1212 36 1 3.1786 -2.9818 5.0566 37 1 1.4935 -3.3532 5.4961 38 1 2.6106 -2.0001 7.2570 39 1 1.2579 -1.1111 6.5166 40 1 3.5019 -0.0572 8.0023 41 1 4.2479 1.1089 6.8834 42 1 2.2313 2.0240 8.0885 43 1 1.7045 0.6579 4.9393 44 1 3.3851 1.0681 4.5209 45 1 1.8528 -1.7948 -1.2264 46 1 3.8047 0.6190 -1.2540 47 1 4.2071 -1.1447 -1.4367 48 1 6.6205 -1.0347 -3.3123 49 1 0.8585 -0.5969 -3.1199 50 1 1.3927 1.0137 -2.4665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970344417.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:30 Heat of formation + Delta-G solvation = -106.253740 kcal Electronic energy + Delta-G solvation = -31772.818016 eV Core-core repulsion = 27278.278772 eV Total energy + Delta-G solvation = -4494.539245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.11589 -48.02244 -41.37898 -40.03693 -39.04975 -36.17204 -35.08247 -34.12594 -32.35927 -31.31782 -29.88687 -29.34648 -26.68431 -25.77520 -25.27900 -25.01175 -23.08348 -22.81220 -21.53091 -21.00770 -20.43089 -18.82295 -18.67386 -18.35955 -17.97695 -17.45540 -17.21938 -16.90136 -16.46673 -16.04909 -15.82720 -15.73042 -15.43318 -15.16504 -14.92398 -14.67407 -14.64513 -14.44567 -14.24866 -14.08284 -13.90732 -13.59349 -13.37960 -13.22045 -13.20247 -13.09423 -12.95763 -12.75479 -12.68240 -12.54810 -12.47670 -12.24439 -12.01432 -11.78927 -11.75936 -11.65843 -11.48728 -11.32403 -11.25498 -10.83821 -10.62221 -10.00127 -9.24592 -8.93422 -7.91387 -5.23992 1.45187 1.46820 1.56521 1.67896 2.14020 2.47255 2.73658 3.06939 3.30257 3.36746 3.40840 3.58717 3.59871 3.72755 3.84134 3.86905 3.90471 3.97560 4.21879 4.25203 4.30333 4.36524 4.49920 4.53342 4.58793 4.62710 4.71941 4.73923 4.74683 4.82030 4.84016 4.86377 4.94802 4.99012 5.01006 5.09771 5.11619 5.20642 5.25312 5.32190 5.42254 5.49612 5.58381 5.67495 5.90713 5.92886 6.03025 6.62070 6.91268 7.31132 7.60475 8.56713 9.25942 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.002251 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.918368 B =12437.149700 C =12739.256825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.159 3.841 3 H 0.055 0.945 4 N -0.708 5.708 5 C 0.516 3.484 6 O -0.585 6.585 7 C -0.100 4.100 8 H 0.112 0.888 9 C -0.107 4.107 10 C -0.111 4.111 11 C 0.032 3.968 12 N -0.535 5.535 13 C 0.009 3.991 14 C 0.209 3.791 15 F -0.221 7.221 16 F -0.216 7.216 17 C 0.076 3.924 18 C -0.107 4.107 19 C 0.168 3.832 20 N -0.644 5.644 21 C -0.237 4.237 22 H 0.084 0.916 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.980 3.020 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.265 1.265 29 C 0.129 3.871 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.412 0.588 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.149 0.851 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.000 1.000 47 H 0.042 0.958 48 H 0.248 0.752 49 H 0.066 0.934 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 -3.875 26.380 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.073 0.927 4 N -0.359 5.359 5 C 0.303 3.697 6 O -0.466 6.466 7 C -0.122 4.122 8 H 0.130 0.870 9 C -0.145 4.145 10 C -0.148 4.148 11 C -0.095 4.095 12 N -0.258 5.258 13 C -0.120 4.120 14 C 0.154 3.846 15 F -0.203 7.203 16 F -0.197 7.197 17 C -0.052 4.052 18 C -0.126 4.126 19 C 0.042 3.958 20 N -0.371 5.371 21 C -0.365 4.365 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.808 3.192 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.190 1.190 29 C 0.004 3.996 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.248 0.752 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.166 0.834 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.018 0.982 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.786 -3.339 26.034 27.679 hybrid contribution 0.131 0.515 -1.073 1.197 sum -8.654 -2.824 24.962 26.570 Atomic orbital electron populations 1.22025 0.93457 1.03096 1.01993 1.20800 0.94977 0.95691 0.83193 0.92700 1.45980 1.66519 1.14575 1.08852 1.21037 0.76586 0.86749 0.85347 1.90678 1.52070 1.17980 1.85832 1.21337 1.02333 0.97142 0.91353 0.87032 1.21577 0.97299 0.95730 0.99921 1.21582 1.02810 0.97411 0.93018 1.22604 0.95447 0.92125 0.99334 1.61992 1.48589 1.11648 1.03604 1.23611 0.95868 0.95065 0.97465 1.23449 0.84587 0.88056 0.88481 1.92994 1.96623 1.74643 1.56008 1.92871 1.54445 1.75872 1.96529 1.21961 0.99308 0.94648 0.89269 1.23410 0.96126 1.00569 0.92534 1.22182 0.94059 0.96310 0.83212 1.46509 1.05733 1.82912 1.01938 1.19459 0.93270 1.39488 0.84298 0.89825 1.25663 0.96667 1.02865 1.00953 1.70033 1.05918 1.55674 1.28611 0.85051 0.77995 0.77219 0.78985 1.21753 1.21804 1.18988 1.22681 0.87707 0.97406 0.91780 0.90537 0.93560 0.90885 0.75159 0.92687 0.89415 0.90420 0.89165 0.88590 0.93401 0.84658 0.86699 0.83401 0.94459 0.91868 0.87505 0.98214 0.93939 0.94292 0.91562 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.31 71.98 0.67 -3.13 16 2 C 0.16 4.96 2.38 44.99 0.11 5.07 16 3 H 0.05 2.10 7.42 -2.39 -0.02 2.08 16 4 N -0.71 -19.26 4.98 -442.54 -2.21 -21.46 16 5 C 0.52 15.40 7.12 87.66 0.62 16.02 16 6 O -0.59 -22.64 15.65 -3.03 -0.05 -22.68 16 7 C -0.10 -2.27 2.69 -11.49 -0.03 -2.30 16 8 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 9 C -0.11 -1.81 5.17 30.67 0.16 -1.65 16 10 C -0.11 -1.44 6.09 30.65 0.19 -1.25 16 11 C 0.03 0.45 5.02 86.32 0.43 0.88 16 12 N -0.54 -9.09 4.86 -896.36 -4.35 -13.44 16 13 C 0.01 0.10 6.00 86.31 0.52 0.62 16 14 C 0.21 2.90 5.14 71.98 0.37 3.27 16 15 F -0.22 -5.16 13.97 44.97 0.63 -4.53 16 16 F -0.22 -3.89 13.86 44.97 0.62 -3.26 16 17 C 0.08 1.83 2.54 86.33 0.22 2.05 16 18 C -0.11 -3.77 3.47 -10.13 -0.04 -3.81 16 19 C 0.17 8.14 7.09 86.44 0.61 8.76 16 20 N -0.64 -33.72 3.70 -716.00 -2.65 -36.37 16 21 C -0.24 -13.55 10.69 84.03 0.90 -12.65 16 22 H 0.08 4.56 7.84 -2.91 -0.02 4.54 16 23 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 24 N -0.95 -58.63 11.43 21.65 0.25 -58.38 16 25 Si 0.98 46.30 29.56 68.60 2.03 48.33 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 C 0.13 5.14 7.64 86.49 0.66 5.80 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.79 7.52 -2.39 -0.02 1.78 16 33 H 0.41 9.02 8.08 -92.70 -0.75 8.27 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.20 7.66 -2.39 -0.02 1.19 16 36 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.96 7.95 -2.39 -0.02 0.94 16 39 H 0.05 0.81 5.54 -2.38 -0.01 0.80 16 40 H 0.14 0.68 7.86 -2.38 -0.02 0.66 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.04 1.06 5.65 -2.39 -0.01 1.05 16 44 H 0.06 1.78 7.78 -2.39 -0.02 1.76 16 45 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 46 H 0.00 0.00 7.99 -2.39 -0.02 -0.02 16 47 H 0.04 2.27 7.19 -2.38 -0.02 2.26 16 48 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 49 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 50 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -78.34 391.47 0.32 -78.02 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.19 Total: 19.64 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.86 Total: 14.15 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -8.96 Total: -129.66 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 1.25 Total: -7.80 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.34 0.32 -78.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970344417.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.237 kcal (2) G-P(sol) polarization free energy of solvation -78.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds