Wall clock time and date at job start Wed Apr 1 2020 04:05:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.47114 * 2 1
4 4 N 1.46500 * 109.46795 * 119.99988 * 2 1 3
5 5 C 1.34771 * 120.00214 * 274.99912 * 4 2 1
6 6 O 1.21520 * 120.00147 * 0.02562 * 5 4 2
7 7 C 1.48130 * 120.00339 * 180.02562 * 5 4 2
8 8 C 1.39246 * 120.04809 * 180.02562 * 7 5 4
9 9 N 1.32198 * 120.06232 * 179.97438 * 8 7 5
10 10 C 1.31928 * 120.16955 * 359.97142 * 9 8 7
11 11 C 1.39666 * 120.08913 * 0.02562 * 10 9 8
12 12 N 1.38976 * 120.02830 * 180.02562 * 11 10 9
13 13 C 1.48534 * 110.99919 * 176.52964 * 12 11 10
14 14 C 1.54940 * 103.22813 * 159.72061 * 13 12 11
15 15 C 1.54596 * 102.92255 * 322.58931 * 14 13 12
16 16 C 1.47900 * 111.00435 * 293.92692 * 12 11 10
17 17 N 1.32343 * 119.93817 * 359.76959 * 11 10 9
18 18 C 1.53002 * 109.47192 * 240.00006 * 2 1 3
19 19 C 1.53941 * 113.74071 * 158.74384 * 18 2 1
20 20 N 1.47815 * 86.03974 * 222.08256 * 19 18 2
21 21 C 1.36935 * 134.46018 * 204.64652 * 20 19 18
22 22 H 1.08001 * 119.99739 * 179.86764 * 21 20 19
23 23 C 1.38812 * 120.00088 * 359.86445 * 21 20 19
24 24 N 1.31619 * 119.99756 * 0.02562 * 23 21 20
25 25 Si 1.86793 * 119.99875 * 180.02562 * 23 21 20
26 26 H 1.48500 * 109.47228 * 90.00388 * 25 23 21
27 27 H 1.48503 * 109.47002 * 209.99754 * 25 23 21
28 28 H 1.48493 * 109.47148 * 329.99696 * 25 23 21
29 29 C 1.47586 * 91.04529 * 24.54707 * 20 19 18
30 30 H 1.09007 * 109.46846 * 60.00138 * 1 2 3
31 31 H 1.08995 * 109.47268 * 300.00090 * 1 2 3
32 32 H 1.08994 * 109.47363 * 179.97438 * 1 2 3
33 33 H 0.97004 * 119.99778 * 95.00523 * 4 2 1
34 34 H 1.07997 * 119.96719 * 359.96948 * 8 7 5
35 35 H 1.07994 * 119.95279 * 179.97438 * 10 9 8
36 36 H 1.08999 * 110.66930 * 278.15821 * 13 12 11
37 37 H 1.08997 * 110.66541 * 41.29031 * 13 12 11
38 38 H 1.08999 * 110.72436 * 204.22779 * 14 13 12
39 39 H 1.09000 * 110.72236 * 80.94290 * 14 13 12
40 40 H 1.09000 * 110.30806 * 263.04057 * 15 14 13
41 41 H 1.08992 * 110.30915 * 140.86867 * 15 14 13
42 42 H 1.09007 * 109.91792 * 333.51066 * 16 12 11
43 43 H 1.08994 * 109.91786 * 94.80258 * 16 12 11
44 44 H 1.09004 * 112.93992 * 290.33269 * 18 2 1
45 45 H 1.09007 * 113.77282 * 336.34740 * 19 18 2
46 46 H 1.09005 * 113.76952 * 107.74688 * 19 18 2
47 47 H 0.96998 * 119.99713 * 180.02562 * 24 23 21
48 48 H 1.08995 * 113.76925 * 221.15104 * 29 20 19
49 49 H 1.09002 * 113.86856 * 89.76979 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0183 2.3571
6 8 1.8576 1.1606 2.4119
7 6 2.6412 -0.7165 3.5665
8 6 2.7740 -0.0229 4.7666
9 7 3.2146 -0.6458 5.8462
10 6 3.5293 -1.9258 5.7911
11 6 3.3986 -2.6280 4.5909
12 7 3.7300 -3.9765 4.5345
13 6 3.4376 -4.5407 3.1919
14 6 4.3186 -5.8144 3.1431
15 6 5.6045 -5.3737 3.8794
16 6 5.1798 -4.1755 4.7485
17 7 2.9541 -2.0093 3.5088
18 6 2.0400 -0.7213 -1.2493
19 6 3.4848 -0.3521 -1.6316
20 7 2.9980 -0.3177 -3.0269
21 6 3.5877 -0.4757 -4.2526
22 1 2.9929 -0.4037 -5.1512
23 6 4.9498 -0.7284 -4.3401
24 7 5.6744 -0.8166 -3.2449
25 14 5.7542 -0.9433 -6.0122
26 1 6.2192 0.3758 -6.5110
27 1 6.9140 -1.8626 -5.8891
28 1 4.7693 -1.5140 -6.9657
29 6 1.6214 -0.0472 -2.5684
30 1 -0.3633 0.5139 -0.8901
31 1 -0.3633 0.5138 0.8899
32 1 -0.3634 -1.0276 -0.0005
33 1 2.2490 -1.6318 1.1526
34 1 2.5170 1.0249 4.8154
35 1 3.8893 -2.4311 6.6751
36 1 2.3823 -4.7992 3.1047
37 1 3.7294 -3.8410 2.4088
38 1 4.5398 -6.0910 2.1123
39 1 3.8357 -6.6377 3.6694
40 1 6.3661 -5.0693 3.1615
41 1 5.9772 -6.1831 4.5071
42 1 5.7262 -3.2831 4.4430
43 1 5.3739 -4.3915 5.7990
44 1 1.8528 -1.7949 -1.2262
45 1 3.8048 0.6191 -1.2539
46 1 4.2071 -1.1448 -1.4366
47 1 6.6263 -0.9928 -3.3061
48 1 0.8588 -0.5969 -3.1199
49 1 1.3910 1.0132 -2.4661
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000970535599.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:51
Heat of formation + Delta-G solvation = 84.028206 kcal
Electronic energy + Delta-G solvation = -30415.609962 eV
Core-core repulsion = 26380.011148 eV
Total energy + Delta-G solvation = -4035.598814 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.73897 -39.80402 -38.91495 -37.99237 -35.02472 -34.56458 -33.19512 -32.16244
-30.43258 -29.65210 -29.37546 -27.53535 -25.87551 -24.85264 -24.43948 -23.87451
-22.11993 -21.41593 -21.12999 -20.42014 -19.33704 -18.03984 -17.95686 -17.01679
-16.80269 -16.57824 -16.40681 -15.93503 -15.42000 -14.89610 -14.59772 -14.39758
-14.18981 -13.86362 -13.65306 -13.52473 -13.19899 -13.03876 -12.90494 -12.77372
-12.47144 -12.16550 -12.01975 -11.77903 -11.68278 -11.51582 -11.39945 -11.35528
-11.30585 -10.93823 -10.89183 -10.74431 -10.40197 -10.38889 -10.19496 -9.91956
-9.77642 -9.47055 -9.34179 -8.89932 -8.80507 -8.68957 -6.88286 -5.77436
-3.09609 0.16361 0.73099 2.61404 2.96434 3.13094 3.38094 3.42927
3.44719 3.55088 3.78062 3.99720 4.13862 4.25922 4.40463 4.44241
4.60008 4.82184 4.88866 4.95841 5.03194 5.10054 5.12956 5.25390
5.27047 5.29242 5.48000 5.52143 5.52829 5.62645 5.63791 5.70551
5.72374 5.77581 5.87472 5.93116 6.00939 6.10912 6.21066 6.33427
6.38745 6.54692 6.55594 6.62868 6.75488 6.90994 7.22366 7.33569
7.35273 7.54876 7.62209 7.97267 8.18127 9.03837 9.70316 10.59524
11.39628
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.009637 B = 0.003057 C = 0.002532
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2904.766467 B = 9157.381466 C =11057.334978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.148 3.852
3 H 0.090 0.910
4 N -0.692 5.692
5 C 0.573 3.427
6 O -0.530 6.530
7 C 0.063 3.937
8 C 0.079 3.921
9 N -0.423 5.423
10 C 0.071 3.929
11 C 0.254 3.746
12 N -0.457 5.457
13 C 0.040 3.960
14 C -0.127 4.127
15 C -0.131 4.131
16 C 0.042 3.958
17 N -0.448 5.448
18 C -0.146 4.146
19 C 0.171 3.829
20 N -0.612 5.612
21 C -0.223 4.223
22 H 0.080 0.920
23 C -0.008 4.008
24 N -0.922 5.922
25 Si 0.911 3.089
26 H -0.289 1.289
27 H -0.290 1.290
28 H -0.280 1.280
29 C 0.131 3.869
30 H 0.069 0.931
31 H 0.054 0.946
32 H 0.054 0.946
33 H 0.408 0.592
34 H 0.183 0.817
35 H 0.175 0.825
36 H 0.089 0.911
37 H 0.077 0.923
38 H 0.081 0.919
39 H 0.076 0.924
40 H 0.075 0.925
41 H 0.078 0.922
42 H 0.056 0.944
43 H 0.091 0.909
44 H 0.088 0.912
45 H 0.026 0.974
46 H 0.071 0.929
47 H 0.253 0.747
48 H 0.045 0.955
49 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.858 -8.436 19.269 21.588
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.044 3.956
3 H 0.108 0.892
4 N -0.342 5.342
5 C 0.355 3.645
6 O -0.406 6.406
7 C -0.079 4.079
8 C -0.080 4.080
9 N -0.136 5.136
10 C -0.094 4.094
11 C 0.017 3.983
12 N -0.176 5.176
13 C -0.086 4.086
14 C -0.165 4.165
15 C -0.169 4.169
16 C -0.084 4.084
17 N -0.170 5.170
18 C -0.166 4.166
19 C 0.045 3.955
20 N -0.338 5.338
21 C -0.350 4.350
22 H 0.097 0.903
23 C -0.204 4.204
24 N -0.569 5.569
25 Si 0.741 3.259
26 H -0.216 1.216
27 H -0.217 1.217
28 H -0.206 1.206
29 C 0.004 3.996
30 H 0.088 0.912
31 H 0.073 0.927
32 H 0.074 0.926
33 H 0.244 0.756
34 H 0.200 0.800
35 H 0.192 0.808
36 H 0.107 0.893
37 H 0.095 0.905
38 H 0.100 0.900
39 H 0.094 0.906
40 H 0.094 0.906
41 H 0.096 0.904
42 H 0.074 0.926
43 H 0.109 0.891
44 H 0.107 0.893
45 H 0.044 0.956
46 H 0.089 0.911
47 H 0.063 0.937
48 H 0.063 0.937
49 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -5.104 -7.900 19.415 21.573
hybrid contribution 1.033 -0.149 -1.410 1.754
sum -4.070 -8.049 18.006 20.138
Atomic orbital electron populations
1.22131 0.95371 1.01905 1.02246 1.21216 0.93702 0.97657 0.83068
0.89170 1.45960 1.64639 1.14653 1.08930 1.17626 0.78328 0.86043
0.82467 1.90801 1.50638 1.14716 1.84493 1.22161 0.99195 0.90237
0.96275 1.23679 0.94756 1.02071 0.87512 1.68551 1.07329 1.08604
1.29084 1.23595 0.97712 0.90651 0.97492 1.21038 0.96063 0.90729
0.90467 1.62124 1.17215 1.07790 1.30498 1.23266 1.01325 0.95646
0.88407 1.22550 0.95091 0.97479 1.01361 1.22425 0.98400 0.97251
0.98824 1.22994 0.84634 0.98930 1.01834 1.68303 1.10920 1.08829
1.28943 1.23826 1.00961 0.99716 0.92142 1.22293 0.91355 0.98478
0.83325 1.45993 1.03280 1.82583 1.01987 1.19035 0.91462 1.41552
0.82975 0.90255 1.24772 0.96036 1.02391 0.97238 1.69822 1.06036
1.55266 1.25758 0.86133 0.79010 0.77556 0.83156 1.21626 1.21657
1.20605 1.22486 0.89671 0.96640 0.90773 0.91189 0.92686 0.92643
0.75600 0.79979 0.80807 0.89307 0.90464 0.90036 0.90557 0.90637
0.90364 0.92587 0.89110 0.89337 0.95648 0.91074 0.93721 0.93706
0.94699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.08 9.31 37.16 0.35 -1.74 16
2 C 0.15 2.28 2.38 -67.93 -0.16 2.12 16
3 H 0.09 1.58 7.42 -51.93 -0.39 1.19 16
4 N -0.69 -9.94 5.07 -54.66 -0.28 -10.22 16
5 C 0.57 8.58 7.78 -12.20 -0.09 8.48 16
6 O -0.53 -9.15 16.00 5.35 0.09 -9.07 16
7 C 0.06 0.84 6.75 -82.87 -0.56 0.28 16
8 C 0.08 0.96 10.76 -17.02 -0.18 0.78 16
9 N -0.42 -4.86 10.48 -12.54 -0.13 -4.99 16
10 C 0.07 0.71 10.72 -16.98 -0.18 0.52 16
11 C 0.25 2.73 6.00 -154.89 -0.93 1.80 16
12 N -0.46 -4.18 5.29 -169.09 -0.90 -5.07 16
13 C 0.04 0.37 6.01 -1.90 -0.01 0.36 16
14 C -0.13 -0.92 7.06 -24.87 -0.18 -1.10 16
15 C -0.13 -0.87 6.93 -25.37 -0.18 -1.05 16
16 C 0.04 0.31 6.30 -2.76 -0.02 0.29 16
17 N -0.45 -5.51 7.81 -8.81 -0.07 -5.58 16
18 C -0.15 -2.61 3.47 -89.70 -0.31 -2.92 16
19 C 0.17 3.98 7.08 -2.84 -0.02 3.96 16
20 N -0.61 -15.65 3.70 -177.68 -0.66 -16.31 16
21 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16
22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16
23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16
24 N -0.92 -27.33 11.39 55.49 0.63 -26.70 16
25 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16
26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
29 C 0.13 2.60 7.64 -2.97 -0.02 2.58 16
30 H 0.07 0.88 7.52 -51.92 -0.39 0.49 16
31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.41 5.45 7.95 -40.82 -0.32 5.13 16
34 H 0.18 2.04 7.63 -52.49 -0.40 1.63 16
35 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16
36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
37 H 0.08 0.84 7.16 -51.93 -0.37 0.47 16
38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
42 H 0.06 0.47 7.75 -51.93 -0.40 0.06 16
43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
44 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16
45 H 0.03 0.63 7.99 -51.93 -0.41 0.21 16
46 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16
47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
48 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16
49 H 0.04 0.68 8.10 -51.93 -0.42 0.25 16
LS Contribution 399.29 15.07 6.02 6.02
Total: -1.00 -32.74 399.29 -10.75 -43.49
By element:
Atomic # 1 Polarization: 11.39 SS G_CDS: -7.68 Total: 3.71 kcal
Atomic # 6 Polarization: 10.37 SS G_CDS: -2.76 Total: 7.61 kcal
Atomic # 7 Polarization: -67.47 SS G_CDS: -1.40 Total: -68.87 kcal
Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -32.74 -10.75 -43.49 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000970535599.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.519 kcal
(2) G-P(sol) polarization free energy of solvation -32.737 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal
(6) G-S(sol) free energy of system = (1) + (5) 84.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds