Wall clock time and date at job start Wed Apr 1 2020 04:05:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.47114 * 2 1
4 4 N 1.46500 * 109.46795 * 119.99988 * 2 1 3
5 5 C 1.34771 * 120.00214 * 274.99912 * 4 2 1
6 6 O 1.21520 * 120.00147 * 0.02562 * 5 4 2
7 7 C 1.48130 * 120.00339 * 180.02562 * 5 4 2
8 8 C 1.39246 * 120.04809 * 180.02562 * 7 5 4
9 9 N 1.32198 * 120.06232 * 179.97438 * 8 7 5
10 10 C 1.31928 * 120.16955 * 359.97142 * 9 8 7
11 11 C 1.39666 * 120.08913 * 0.02562 * 10 9 8
12 12 N 1.38976 * 120.02830 * 180.02562 * 11 10 9
13 13 C 1.48534 * 110.99919 * 176.52964 * 12 11 10
14 14 C 1.54940 * 103.22813 * 159.72061 * 13 12 11
15 15 C 1.54596 * 102.92255 * 322.58931 * 14 13 12
16 16 C 1.47900 * 111.00435 * 293.92692 * 12 11 10
17 17 N 1.32343 * 119.93817 * 359.76959 * 11 10 9
18 18 C 1.53002 * 109.47192 * 240.00006 * 2 1 3
19 19 C 1.53941 * 113.74071 * 158.74384 * 18 2 1
20 20 N 1.47815 * 86.03974 * 222.08256 * 19 18 2
21 21 C 1.36935 * 134.46018 * 204.64652 * 20 19 18
22 22 H 1.08001 * 119.99739 * 179.86764 * 21 20 19
23 23 C 1.38812 * 120.00088 * 359.86445 * 21 20 19
24 24 N 1.31619 * 119.99756 * 0.02562 * 23 21 20
25 25 Si 1.86793 * 119.99875 * 180.02562 * 23 21 20
26 26 H 1.48500 * 109.47228 * 90.00388 * 25 23 21
27 27 H 1.48503 * 109.47002 * 209.99754 * 25 23 21
28 28 H 1.48493 * 109.47148 * 329.99696 * 25 23 21
29 29 C 1.47586 * 91.04529 * 24.54707 * 20 19 18
30 30 H 1.09007 * 109.46846 * 60.00138 * 1 2 3
31 31 H 1.08995 * 109.47268 * 300.00090 * 1 2 3
32 32 H 1.08994 * 109.47363 * 179.97438 * 1 2 3
33 33 H 0.97004 * 119.99778 * 95.00523 * 4 2 1
34 34 H 1.07997 * 119.96719 * 359.96948 * 8 7 5
35 35 H 1.07994 * 119.95279 * 179.97438 * 10 9 8
36 36 H 1.08999 * 110.66930 * 278.15821 * 13 12 11
37 37 H 1.08997 * 110.66541 * 41.29031 * 13 12 11
38 38 H 1.08999 * 110.72436 * 204.22779 * 14 13 12
39 39 H 1.09000 * 110.72236 * 80.94290 * 14 13 12
40 40 H 1.09000 * 110.30806 * 263.04057 * 15 14 13
41 41 H 1.08992 * 110.30915 * 140.86867 * 15 14 13
42 42 H 1.09007 * 109.91792 * 333.51066 * 16 12 11
43 43 H 1.08994 * 109.91786 * 94.80258 * 16 12 11
44 44 H 1.09004 * 112.93992 * 290.33269 * 18 2 1
45 45 H 1.09007 * 113.77282 * 336.34740 * 19 18 2
46 46 H 1.09005 * 113.76952 * 107.74688 * 19 18 2
47 47 H 0.96998 * 119.99713 * 180.02562 * 24 23 21
48 48 H 1.08995 * 113.76925 * 221.15104 * 29 20 19
49 49 H 1.09002 * 113.86856 * 89.76979 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0183 2.3571
6 8 1.8576 1.1606 2.4119
7 6 2.6412 -0.7165 3.5665
8 6 2.7740 -0.0229 4.7666
9 7 3.2146 -0.6458 5.8462
10 6 3.5293 -1.9258 5.7911
11 6 3.3986 -2.6280 4.5909
12 7 3.7300 -3.9765 4.5345
13 6 3.4376 -4.5407 3.1919
14 6 4.3186 -5.8144 3.1431
15 6 5.6045 -5.3737 3.8794
16 6 5.1798 -4.1755 4.7485
17 7 2.9541 -2.0093 3.5088
18 6 2.0400 -0.7213 -1.2493
19 6 3.4848 -0.3521 -1.6316
20 7 2.9980 -0.3177 -3.0269
21 6 3.5877 -0.4757 -4.2526
22 1 2.9929 -0.4037 -5.1512
23 6 4.9498 -0.7284 -4.3401
24 7 5.6744 -0.8166 -3.2449
25 14 5.7542 -0.9433 -6.0122
26 1 6.2192 0.3758 -6.5110
27 1 6.9140 -1.8626 -5.8891
28 1 4.7693 -1.5140 -6.9657
29 6 1.6214 -0.0472 -2.5684
30 1 -0.3633 0.5139 -0.8901
31 1 -0.3633 0.5138 0.8899
32 1 -0.3634 -1.0276 -0.0005
33 1 2.2490 -1.6318 1.1526
34 1 2.5170 1.0249 4.8154
35 1 3.8893 -2.4311 6.6751
36 1 2.3823 -4.7992 3.1047
37 1 3.7294 -3.8410 2.4088
38 1 4.5398 -6.0910 2.1123
39 1 3.8357 -6.6377 3.6694
40 1 6.3661 -5.0693 3.1615
41 1 5.9772 -6.1831 4.5071
42 1 5.7262 -3.2831 4.4430
43 1 5.3739 -4.3915 5.7990
44 1 1.8528 -1.7949 -1.2262
45 1 3.8048 0.6191 -1.2539
46 1 4.2071 -1.1448 -1.4366
47 1 6.6263 -0.9928 -3.3061
48 1 0.8588 -0.5969 -3.1199
49 1 1.3910 1.0132 -2.4661
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000970535599.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:50
Heat of formation + Delta-G solvation = 61.589566 kcal
Electronic energy + Delta-G solvation = -30416.582974 eV
Core-core repulsion = 26380.011148 eV
Total energy + Delta-G solvation = -4036.571826 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.63090 -41.00070 -39.89890 -39.39742 -36.33961 -35.55504 -34.22972 -33.91425
-31.74428 -30.47355 -30.03382 -29.37187 -26.99978 -26.36552 -25.66724 -25.22701
-23.34879 -22.30672 -22.00549 -21.53712 -20.83471 -19.15299 -18.90298 -18.70814
-17.85709 -17.47632 -17.32308 -17.08940 -16.91339 -16.41986 -15.85998 -15.70117
-15.39677 -14.98474 -14.88106 -14.66231 -14.38661 -14.15126 -13.88900 -13.59593
-13.48246 -13.43858 -13.28308 -13.11082 -12.93875 -12.87787 -12.72753 -12.55099
-12.43029 -12.27708 -12.08115 -12.04337 -11.76813 -11.64376 -11.48301 -11.43235
-11.23845 -11.01114 -10.88335 -10.32867 -10.14823 -9.51921 -8.93535 -7.91684
-5.25396 -0.76401 -0.15732 1.44134 1.46294 1.54750 1.54931 1.87690
2.26438 2.46270 2.59367 2.88415 3.12560 3.29111 3.31381 3.36334
3.58406 3.68913 3.76111 3.88705 3.94300 3.99983 4.08122 4.26508
4.27336 4.32837 4.44803 4.53782 4.56391 4.65811 4.72633 4.80256
4.84046 4.86653 4.88325 4.98197 4.99605 5.01425 5.05494 5.14124
5.18435 5.23622 5.31559 5.38920 5.46289 5.52548 5.62820 5.75982
5.91780 6.03592 6.32725 6.56474 6.90145 7.00570 7.59745 8.55341
9.25232
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.009637 B = 0.003057 C = 0.002532
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2904.766467 B = 9157.381466 C =11057.334978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.157 3.843
3 H 0.068 0.932
4 N -0.689 5.689
5 C 0.573 3.427
6 O -0.558 6.558
7 C 0.045 3.955
8 C 0.077 3.923
9 N -0.432 5.432
10 C 0.087 3.913
11 C 0.249 3.751
12 N -0.452 5.452
13 C 0.037 3.963
14 C -0.123 4.123
15 C -0.129 4.129
16 C 0.039 3.961
17 N -0.458 5.458
18 C -0.110 4.110
19 C 0.168 3.832
20 N -0.644 5.644
21 C -0.235 4.235
22 H 0.086 0.914
23 C -0.068 4.068
24 N -0.955 5.955
25 Si 0.978 3.022
26 H -0.289 1.289
27 H -0.294 1.294
28 H -0.265 1.265
29 C 0.132 3.868
30 H 0.080 0.920
31 H 0.053 0.947
32 H 0.071 0.929
33 H 0.414 0.586
34 H 0.186 0.814
35 H 0.210 0.790
36 H 0.087 0.913
37 H 0.055 0.945
38 H 0.079 0.921
39 H 0.088 0.912
40 H 0.067 0.933
41 H 0.099 0.901
42 H 0.043 0.957
43 H 0.117 0.883
44 H 0.102 0.898
45 H 0.004 0.996
46 H 0.039 0.961
47 H 0.247 0.753
48 H 0.066 0.934
49 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.714 -10.041 20.177 23.250
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.052 3.948
3 H 0.086 0.914
4 N -0.339 5.339
5 C 0.357 3.643
6 O -0.437 6.437
7 C -0.096 4.096
8 C -0.081 4.081
9 N -0.144 5.144
10 C -0.080 4.080
11 C 0.011 3.989
12 N -0.171 5.171
13 C -0.090 4.090
14 C -0.161 4.161
15 C -0.167 4.167
16 C -0.086 4.086
17 N -0.181 5.181
18 C -0.130 4.130
19 C 0.042 3.958
20 N -0.370 5.370
21 C -0.364 4.364
22 H 0.104 0.896
23 C -0.261 4.261
24 N -0.604 5.604
25 Si 0.806 3.194
26 H -0.216 1.216
27 H -0.220 1.220
28 H -0.190 1.190
29 C 0.007 3.993
30 H 0.098 0.902
31 H 0.072 0.928
32 H 0.090 0.910
33 H 0.250 0.750
34 H 0.203 0.797
35 H 0.226 0.774
36 H 0.105 0.895
37 H 0.074 0.926
38 H 0.098 0.902
39 H 0.107 0.893
40 H 0.086 0.914
41 H 0.117 0.883
42 H 0.062 0.938
43 H 0.135 0.865
44 H 0.120 0.880
45 H 0.021 0.979
46 H 0.058 0.942
47 H 0.056 0.944
48 H 0.084 0.916
49 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -6.006 -9.496 20.313 23.213
hybrid contribution 1.314 0.299 -1.617 2.105
sum -4.692 -9.197 18.696 21.357
Atomic orbital electron populations
1.22052 0.92828 1.03143 1.02695 1.21002 0.95450 0.96028 0.82348
0.91381 1.45887 1.64585 1.14809 1.08610 1.17864 0.77683 0.85746
0.82973 1.90774 1.51960 1.15877 1.85055 1.21858 1.01142 0.90813
0.95781 1.23733 0.94641 1.02325 0.87429 1.68628 1.07826 1.09400
1.28596 1.24162 0.95620 0.90004 0.98198 1.21368 0.95690 0.91429
0.90416 1.62222 1.18269 1.06526 1.30097 1.23254 1.01678 0.96129
0.87928 1.22544 0.95072 0.96790 1.01657 1.22446 0.97839 0.97586
0.98829 1.23143 0.83208 0.98699 1.03550 1.68250 1.11374 1.08519
1.29918 1.23441 0.96357 1.00453 0.92719 1.22163 0.93937 0.96374
0.83298 1.46416 1.05875 1.82861 1.01868 1.19476 0.91994 1.40494
0.84415 0.89637 1.25634 0.96755 1.02910 1.00775 1.70024 1.05786
1.56775 1.27834 0.85078 0.77921 0.77169 0.79182 1.21620 1.21999
1.18958 1.22676 0.87636 0.97673 0.91295 0.90160 0.92828 0.90977
0.74988 0.79670 0.77363 0.89461 0.92629 0.90204 0.89314 0.91416
0.88261 0.93829 0.86456 0.88010 0.97865 0.94242 0.94396 0.91558
0.93559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.66 9.31 71.98 0.67 -2.99 16
2 C 0.16 4.78 2.38 44.99 0.11 4.89 16
3 H 0.07 2.43 7.42 -2.39 -0.02 2.41 16
4 N -0.69 -20.01 5.07 -445.14 -2.26 -22.27 16
5 C 0.57 17.57 7.78 86.87 0.68 18.24 16
6 O -0.56 -19.79 16.00 -3.78 -0.06 -19.85 16
7 C 0.04 1.19 6.75 41.82 0.28 1.47 16
8 C 0.08 1.86 10.76 84.88 0.91 2.77 16
9 N -0.43 -9.42 10.48 -193.60 -2.03 -11.44 16
10 C 0.09 1.54 10.72 85.02 0.91 2.45 16
11 C 0.25 5.07 6.00 133.22 0.80 5.87 16
12 N -0.45 -7.52 5.29 -688.88 -3.65 -11.17 16
13 C 0.04 0.65 6.01 86.65 0.52 1.17 16
14 C -0.12 -1.61 7.06 31.80 0.22 -1.38 16
15 C -0.13 -1.48 6.93 31.47 0.22 -1.26 16
16 C 0.04 0.50 6.30 86.45 0.54 1.04 16
17 N -0.46 -11.24 7.81 -181.79 -1.42 -12.66 16
18 C -0.11 -3.88 3.47 -10.14 -0.04 -3.91 16
19 C 0.17 8.10 7.08 86.44 0.61 8.71 16
20 N -0.64 -33.23 3.70 -716.06 -2.65 -35.88 16
21 C -0.24 -13.33 10.70 84.03 0.90 -12.43 16
22 H 0.09 4.59 7.83 -2.91 -0.02 4.56 16
23 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16
24 N -0.96 -58.47 11.39 21.65 0.25 -58.22 16
25 Si 0.98 45.99 29.55 68.60 2.03 48.01 16
26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
28 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16
29 C 0.13 5.11 7.64 86.48 0.66 5.77 16
30 H 0.08 1.82 7.52 -2.38 -0.02 1.80 16
31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.41 11.16 7.95 -92.71 -0.74 10.42 16
34 H 0.19 4.23 7.63 -2.91 -0.02 4.21 16
35 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16
36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.06 1.23 7.16 -2.39 -0.02 1.21 16
38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16
42 H 0.04 0.67 7.75 -2.38 -0.02 0.65 16
43 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16
44 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16
45 H 0.00 0.18 7.99 -2.38 -0.02 0.17 16
46 H 0.04 2.13 7.16 -2.38 -0.02 2.12 16
47 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
48 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16
49 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16
Total: -1.00 -72.45 399.29 -1.09 -73.54
By element:
Atomic # 1 Polarization: 22.74 SS G_CDS: 0.22 Total: 22.96 kcal
Atomic # 6 Polarization: 18.50 SS G_CDS: 8.47 Total: 26.97 kcal
Atomic # 7 Polarization: -139.88 SS G_CDS: -11.76 Total: -151.64 kcal
Atomic # 8 Polarization: -19.79 SS G_CDS: -0.06 Total: -19.85 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal
Total: -72.45 -1.09 -73.54 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000970535599.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.130 kcal
(2) G-P(sol) polarization free energy of solvation -72.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds