Wall clock time and date at job start Wed Apr 1 2020 03:10:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31002 * 1
3 3 C 1.50696 * 120.00381 * 2 1
4 4 N 1.46497 * 109.47164 * 124.99658 * 3 2 1
5 5 C 1.34812 * 126.59327 * 125.00208 * 4 3 2
6 6 C 1.36598 * 106.84165 * 179.97438 * 5 4 3
7 7 C 1.47527 * 125.77466 * 179.97438 * 6 5 4
8 8 O 1.21585 * 119.99779 * 359.97438 * 7 6 5
9 9 N 1.34775 * 119.99954 * 179.97438 * 7 6 5
10 10 C 1.46500 * 119.99960 * 179.97438 * 9 7 6
11 11 H 1.09007 * 109.67132 * 35.50777 * 10 9 7
12 12 C 1.53330 * 109.67847 * 275.00302 * 10 9 7
13 13 C 1.52827 * 108.12834 * 176.07540 * 12 10 9
14 14 C 1.50831 * 111.69005 * 58.89869 * 13 12 10
15 15 H 1.09001 * 108.77091 * 186.62245 * 14 13 12
16 16 C 1.53909 * 113.00729 * 65.17206 * 14 13 12
17 17 N 1.47818 * 104.06080 * 198.50085 * 16 14 13
18 18 C 1.36938 * 125.65175 * 203.37208 * 17 16 14
19 19 H 1.07994 * 119.99911 * 179.97438 * 18 17 16
20 20 C 1.38816 * 119.99382 * 359.97438 * 18 17 16
21 21 N 1.31613 * 120.00316 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 119.99464 * 179.97438 * 20 18 17
23 23 H 1.48509 * 109.47261 * 60.00282 * 22 20 18
24 24 H 1.48499 * 109.46972 * 179.97438 * 22 20 18
25 25 H 1.48498 * 109.47643 * 300.00229 * 22 20 18
26 26 C 1.47175 * 108.69979 * 23.35093 * 17 16 14
27 27 C 1.53993 * 113.97148 * 308.72491 * 14 13 12
28 28 H 1.08998 * 112.71388 * 280.88440 * 27 14 13
29 29 C 1.52592 * 109.70970 * 156.03318 * 10 9 7
30 30 N 1.34407 * 108.45791 * 0.24158 * 6 5 4
31 31 N 1.28764 * 109.52039 * 359.59074 * 30 6 5
32 32 H 1.08000 * 119.99764 * 0.02562 * 1 2 3
33 33 H 1.07999 * 120.00304 * 179.97438 * 1 2 3
34 34 H 1.08005 * 119.99501 * 179.97438 * 2 1 3
35 35 H 1.09000 * 109.46927 * 5.00189 * 3 2 1
36 36 H 1.08995 * 109.47437 * 244.99956 * 3 2 1
37 37 H 1.07998 * 126.58336 * 359.97438 * 5 4 3
38 38 H 0.97002 * 120.00452 * 359.97438 * 9 7 6
39 39 H 1.09002 * 109.73745 * 295.74924 * 12 10 9
40 40 H 1.08996 * 109.73810 * 56.40532 * 12 10 9
41 41 H 1.09007 * 109.02286 * 179.52994 * 13 12 10
42 42 H 1.08999 * 109.02806 * 298.35769 * 13 12 10
43 43 H 1.09001 * 110.50980 * 79.86227 * 16 14 13
44 44 H 1.08991 * 110.51126 * 317.14780 * 16 14 13
45 45 H 0.97001 * 119.99977 * 179.97438 * 21 20 18
46 46 H 1.08996 * 109.96064 * 241.57443 * 26 17 16
47 47 H 1.09001 * 109.95843 * 120.33261 * 26 17 16
48 48 H 1.08994 * 109.15897 * 302.50693 * 29 10 9
49 49 H 1.09002 * 109.15562 * 61.74928 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 7 2.9938 1.3318 1.1314
5 6 4.3230 1.5496 1.0741
6 6 4.7899 1.4870 2.3563
7 6 6.1940 1.6656 2.7724
8 8 7.0510 1.8900 1.9397
9 7 6.5266 1.5800 4.0757
10 6 7.9209 1.7568 4.4889
11 1 8.3986 2.5062 3.8576
12 6 8.6692 0.4242 4.3646
13 6 10.1379 0.6697 4.7086
14 6 10.2991 1.2223 6.1028
15 1 11.3448 1.4893 6.2555
16 6 9.8648 0.2307 7.1968
17 7 9.6611 1.0790 8.3901
18 6 9.7116 0.6528 9.6904
19 1 9.5486 1.3542 10.4953
20 6 9.9722 -0.6809 9.9739
21 7 10.1703 -1.5357 8.9930
22 14 10.0418 -1.2622 11.7478
23 1 8.7351 -1.0045 12.4048
24 1 10.3330 -2.7180 11.7805
25 1 11.1117 -0.5265 12.4684
26 6 9.3957 2.4578 7.9491
27 6 9.4150 2.4486 6.3958
28 1 9.8227 3.3703 5.9806
29 6 7.9728 2.2044 5.9468
30 7 3.7548 1.2294 3.1740
31 7 2.6728 1.1364 2.4823
32 1 -0.5400 0.9353 -0.0004
33 1 -0.5400 -0.9353 -0.0004
34 1 1.8500 -0.9354 0.0004
35 1 1.3587 2.1316 0.0896
36 1 2.6214 1.4025 -0.9313
37 1 4.9067 1.7374 0.1851
38 1 5.8428 1.4014 4.7401
39 1 8.2451 -0.3021 5.0579
40 1 8.5877 0.0501 3.3441
41 1 10.6826 -0.2714 4.6329
42 1 10.5563 1.3792 3.9947
43 1 10.6491 -0.5038 7.3798
44 1 8.9348 -0.2639 6.9166
45 1 10.3528 -2.4675 9.1912
46 1 10.1703 3.1250 8.3269
47 1 8.4183 2.7814 8.3072
48 1 7.4024 3.1264 6.0584
49 1 7.5296 1.4312 6.5743
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000980192815.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:10:40
Heat of formation + Delta-G solvation = 103.315514 kcal
Electronic energy + Delta-G solvation = -29950.614655 eV
Core-core repulsion = 25915.852202 eV
Total energy + Delta-G solvation = -4034.762453 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.44425 -39.93434 -38.63952 -36.45016 -35.41920 -33.53628 -33.09827 -31.88947
-31.22392 -30.17653 -28.74992 -27.54341 -26.07034 -24.90732 -23.85045 -22.67864
-22.06639 -21.43768 -20.87554 -20.38177 -19.66060 -18.67687 -17.76818 -16.78931
-16.40881 -16.33456 -16.06239 -15.76976 -15.24436 -14.90446 -14.79414 -14.50684
-14.16789 -13.99397 -13.87583 -13.38182 -13.25099 -13.02261 -12.40179 -12.32806
-12.28583 -12.08783 -11.94863 -11.85100 -11.57111 -11.25560 -11.05343 -10.95576
-10.79872 -10.74955 -10.57889 -10.46989 -10.26653 -10.16734 -9.99663 -9.70121
-9.66924 -9.52126 -9.48713 -9.26796 -8.79455 -8.55082 -6.73990 -5.58870
-2.98974 0.85974 1.23257 1.56171 2.03542 3.15835 3.26161 3.44581
3.48741 3.49976 3.89520 3.98851 4.11375 4.38304 4.50104 4.55151
4.72081 4.79293 5.02941 5.05221 5.14184 5.21057 5.35860 5.51124
5.53872 5.55026 5.67488 5.71658 5.83820 5.86494 5.89322 5.93347
5.96529 6.00045 6.05869 6.15192 6.38529 6.43419 6.52916 6.59027
6.62210 6.69132 6.77670 6.82459 6.96319 7.10961 7.50006 7.63836
7.71088 7.78003 7.94922 8.21375 8.42529 9.29020 9.90268 10.56606
11.45458
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.016423 B = 0.002135 C = 0.001997
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1704.490519 B =13110.785002 C =14017.265978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.183 4.183
3 C 0.151 3.849
4 N -0.361 5.361
5 C 0.091 3.909
6 C -0.099 4.099
7 C 0.604 3.396
8 O -0.543 6.543
9 N -0.706 5.706
10 C 0.148 3.852
11 H 0.087 0.913
12 C -0.126 4.126
13 C -0.095 4.095
14 C -0.113 4.113
15 H 0.063 0.937
16 C 0.165 3.835
17 N -0.606 5.606
18 C -0.221 4.221
19 H 0.075 0.925
20 C -0.012 4.012
21 N -0.922 5.922
22 Si 0.912 3.088
23 H -0.286 1.286
24 H -0.291 1.291
25 H -0.286 1.286
26 C 0.138 3.862
27 C -0.088 4.088
28 H 0.075 0.925
29 C -0.115 4.115
30 N -0.203 5.203
31 N -0.059 5.059
32 H 0.103 0.897
33 H 0.109 0.891
34 H 0.118 0.882
35 H 0.102 0.898
36 H 0.114 0.886
37 H 0.205 0.795
38 H 0.408 0.592
39 H 0.073 0.927
40 H 0.060 0.940
41 H 0.064 0.936
42 H 0.053 0.947
43 H 0.100 0.900
44 H 0.016 0.984
45 H 0.251 0.749
46 H 0.019 0.981
47 H 0.023 0.977
48 H 0.059 0.941
49 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.229 6.465 -22.206 27.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.202 4.202
3 C 0.031 3.969
4 N -0.146 5.146
5 C -0.066 4.066
6 C -0.238 4.238
7 C 0.388 3.612
8 O -0.420 6.420
9 N -0.355 5.355
10 C 0.045 3.955
11 H 0.105 0.895
12 C -0.164 4.164
13 C -0.134 4.134
14 C -0.133 4.133
15 H 0.081 0.919
16 C 0.041 3.959
17 N -0.332 5.332
18 C -0.349 4.349
19 H 0.093 0.907
20 C -0.208 4.208
21 N -0.571 5.571
22 Si 0.743 3.257
23 H -0.213 1.213
24 H -0.217 1.217
25 H -0.213 1.213
26 C 0.012 3.988
27 C -0.108 4.108
28 H 0.093 0.907
29 C -0.153 4.153
30 N -0.077 5.077
31 N -0.039 5.039
32 H 0.121 0.879
33 H 0.127 0.873
34 H 0.136 0.864
35 H 0.120 0.880
36 H 0.132 0.868
37 H 0.221 0.779
38 H 0.243 0.757
39 H 0.091 0.909
40 H 0.078 0.922
41 H 0.082 0.918
42 H 0.072 0.928
43 H 0.118 0.882
44 H 0.034 0.966
45 H 0.062 0.938
46 H 0.037 0.963
47 H 0.041 0.959
48 H 0.078 0.922
49 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -15.710 6.156 -21.679 27.472
hybrid contribution 0.241 -0.264 0.430 0.560
sum -15.469 5.892 -21.249 26.935
Atomic orbital electron populations
1.24010 0.95462 1.02897 0.96125 1.22871 0.96400 0.97393 1.03512
1.21107 0.91947 0.98245 0.85588 1.50565 1.06647 1.48280 1.09134
1.23402 0.84589 0.97885 1.00708 1.21579 0.95634 1.16100 0.90514
1.16730 0.84678 0.76755 0.83069 1.90795 1.49300 1.50205 1.51664
1.45955 1.11090 1.71073 1.07337 1.21080 0.79851 0.98201 0.96388
0.89537 1.21945 0.96149 0.96972 1.01348 1.20799 0.95414 1.00910
0.96256 1.21777 0.99015 0.96906 0.95596 0.91882 1.21782 0.99994
0.91843 0.82305 1.44603 1.83349 1.02824 1.02408 1.19026 1.40847
0.92961 0.82084 0.90701 1.24766 1.02471 0.95970 0.97544 1.69813
1.55373 1.02971 1.28901 0.86186 0.77796 0.77551 0.84157 1.21307
1.21654 1.21269 1.21604 0.97275 0.88749 0.91178 1.22047 0.93951
0.98095 0.96695 0.90686 1.21781 0.97916 1.01648 0.93978 1.74687
0.96446 1.09698 1.26914 1.82035 1.16865 1.21721 0.83288 0.87878
0.87315 0.86371 0.87985 0.86800 0.77853 0.75730 0.90867 0.92161
0.91753 0.92840 0.88241 0.96625 0.93803 0.96299 0.95929 0.92200
0.90367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.56 14.32 29.01 0.42 -0.15 16
2 C -0.18 -0.86 9.72 -36.03 -0.35 -1.21 16
3 C 0.15 0.61 6.98 -5.20 -0.04 0.58 16
4 N -0.36 -3.01 3.68 -62.25 -0.23 -3.24 16
5 C 0.09 0.81 11.27 -16.84 -0.19 0.62 16
6 C -0.10 -1.22 6.99 -83.55 -0.58 -1.81 16
7 C 0.60 8.54 7.79 -12.47 -0.10 8.45 16
8 O -0.54 -8.75 16.54 5.29 0.09 -8.67 16
9 N -0.71 -9.86 5.10 -54.89 -0.28 -10.14 16
10 C 0.15 2.21 2.42 -67.97 -0.16 2.05 16
11 H 0.09 1.33 7.60 -51.93 -0.39 0.93 16
12 C -0.13 -2.00 5.39 -26.65 -0.14 -2.14 16
13 C -0.10 -1.55 5.38 -27.91 -0.15 -1.70 16
14 C -0.11 -2.14 2.81 -90.72 -0.26 -2.40 16
15 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16
16 C 0.17 3.96 4.79 -2.84 -0.01 3.94 16
17 N -0.61 -15.53 3.41 -169.62 -0.58 -16.10 16
18 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16
19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16
20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16
21 N -0.92 -27.07 10.11 55.49 0.56 -26.50 16
22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16
23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
26 C 0.14 2.90 6.54 -2.43 -0.02 2.88 16
27 C -0.09 -1.54 3.61 -88.86 -0.32 -1.86 16
28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
29 C -0.12 -1.83 4.10 -26.94 -0.11 -1.94 16
30 N -0.20 -2.72 12.04 32.85 0.40 -2.32 16
31 N -0.06 -0.71 13.64 60.35 0.82 0.12 16
32 H 0.10 0.28 7.84 -52.49 -0.41 -0.13 16
33 H 0.11 0.35 8.06 -52.49 -0.42 -0.07 16
34 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16
35 H 0.10 0.29 7.79 -51.93 -0.40 -0.12 16
36 H 0.11 0.13 8.08 -51.93 -0.42 -0.29 16
37 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16
38 H 0.41 5.43 8.29 -40.82 -0.34 5.09 16
39 H 0.07 1.29 6.80 -51.93 -0.35 0.93 16
40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
41 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16
42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16
43 H 0.10 2.73 5.96 -51.93 -0.31 2.42 16
44 H 0.02 0.40 6.15 -51.93 -0.32 0.08 16
45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
47 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16
48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
49 H 0.08 1.43 7.15 -51.93 -0.37 1.06 16
LS Contribution 393.97 15.07 5.94 5.94
Total: -1.00 -33.98 393.97 -8.07 -42.05
By element:
Atomic # 1 Polarization: 10.49 SS G_CDS: -7.50 Total: 2.99 kcal
Atomic # 6 Polarization: 0.78 SS G_CDS: -2.27 Total: -1.48 kcal
Atomic # 7 Polarization: -58.89 SS G_CDS: 0.69 Total: -58.19 kcal
Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal
Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -33.98 -8.07 -42.05 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000980192815.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.364 kcal
(2) G-P(sol) polarization free energy of solvation -33.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal
(6) G-S(sol) free energy of system = (1) + (5) 103.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds