Wall clock time and date at job start Wed Apr 1 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00021 * 2 1 4 4 N 1.46506 * 109.47404 * 124.99845 * 3 2 1 5 5 C 1.34814 * 126.59653 * 124.99938 * 4 3 2 6 6 C 1.36594 * 106.83896 * 179.97438 * 5 4 3 7 7 C 1.47516 * 125.77009 * 179.97438 * 6 5 4 8 8 O 1.21602 * 120.00018 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00312 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00287 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.02028 * 33.94111 * 10 9 7 12 12 C 1.52525 * 109.03547 * 274.99985 * 10 9 7 13 13 C 1.53847 * 111.58885 * 293.58553 * 12 10 9 14 14 C 1.51428 * 107.04500 * 302.69084 * 13 12 10 15 15 H 1.09001 * 110.25008 * 305.75331 * 14 13 12 16 16 C 1.52322 * 117.46291 * 178.85892 * 14 13 12 17 17 N 1.48241 * 105.86187 * 214.73087 * 16 14 13 18 18 C 1.36938 * 125.78303 * 183.22516 * 17 16 14 19 19 H 1.08004 * 120.00032 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99900 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99988 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46852 * 89.99743 * 22 20 18 24 24 H 1.48496 * 109.47153 * 209.99767 * 22 20 18 25 25 H 1.48497 * 109.46994 * 330.00011 * 22 20 18 26 26 C 1.49760 * 108.90925 * 4.07040 * 17 16 14 27 27 C 1.53063 * 102.92211 * 22.91638 * 26 17 16 28 28 H 1.09002 * 110.56715 * 77.43247 * 27 26 17 29 29 C 1.51621 * 116.66951 * 204.82269 * 27 26 17 30 30 N 1.34402 * 108.45825 * 0.24165 * 6 5 4 31 31 N 1.28766 * 109.52269 * 359.58612 * 30 6 5 32 32 H 1.07994 * 120.00294 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.99801 * 0.02562 * 1 2 3 34 34 H 1.07995 * 119.99955 * 179.97438 * 2 1 3 35 35 H 1.09000 * 109.47187 * 4.99408 * 3 2 1 36 36 H 1.09007 * 109.47175 * 244.99614 * 3 2 1 37 37 H 1.08000 * 126.57535 * 359.97438 * 5 4 3 38 38 H 0.97004 * 119.99796 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.04441 * 54.10940 * 12 10 9 40 40 H 1.08997 * 109.04483 * 173.06802 * 12 10 9 41 41 H 1.09002 * 109.93791 * 62.14539 * 13 12 10 42 42 H 1.09001 * 109.93910 * 183.37373 * 13 12 10 43 43 H 1.08996 * 110.17454 * 333.82877 * 16 14 13 44 44 H 1.09004 * 110.17012 * 95.63605 * 16 14 13 45 45 H 0.96996 * 119.99584 * 180.02562 * 21 20 18 46 46 H 1.08997 * 110.29314 * 264.87254 * 26 17 16 47 47 H 1.09002 * 111.46498 * 141.50033 * 26 17 16 48 48 H 1.08998 * 109.94499 * 57.98245 * 29 27 26 49 49 H 1.09001 * 110.00670 * 296.77937 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3230 1.5497 1.0741 6 6 4.7899 1.4873 2.3563 7 6 6.1938 1.6659 2.7724 8 8 7.0510 1.8903 1.9396 9 7 6.5267 1.5794 4.0755 10 6 7.9210 1.7562 4.4887 11 1 8.3956 2.4872 3.8340 12 6 8.6514 0.4236 4.3584 13 6 8.1132 -0.6168 5.3558 14 6 8.2651 -0.0238 6.7409 15 1 9.2972 0.2842 6.9083 16 6 7.7751 -0.8558 7.9189 17 7 7.2384 0.1132 8.9040 18 6 6.7481 -0.1949 10.1449 19 1 6.3791 0.5890 10.7897 20 6 6.7254 -1.5149 10.5741 21 7 7.1746 -2.4703 9.7881 22 14 6.0572 -1.9352 12.2671 23 1 4.5993 -2.2012 12.1718 24 1 6.7479 -3.1429 12.7861 25 1 6.2931 -0.7954 13.1893 26 6 7.2992 1.4886 8.3145 27 6 7.3252 1.2148 6.8088 28 1 6.3282 0.9619 6.4483 29 6 7.9515 2.2828 5.9336 30 7 3.7548 1.2297 3.1740 31 7 2.6727 1.1367 2.4822 32 1 -0.5400 -0.9352 0.0004 33 1 -0.5400 0.9353 -0.0004 34 1 1.8500 -0.9353 0.0004 35 1 1.3586 2.1316 0.0895 36 1 2.6214 1.4025 -0.9314 37 1 4.9066 1.7376 0.1850 38 1 5.8432 1.3992 4.7398 39 1 8.5218 0.0446 3.3446 40 1 9.7135 0.5802 4.5463 41 1 7.0622 -0.8197 5.1504 42 1 8.6920 -1.5374 5.2812 43 1 6.9887 -1.5380 7.5960 44 1 8.6032 -1.4150 8.3545 45 1 7.1583 -3.3926 10.0879 46 1 8.2121 1.9945 8.6286 47 1 6.4214 2.0766 8.5826 48 1 8.9815 2.4602 6.2430 49 1 7.3778 3.2069 6.0047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980192817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:49 Heat of formation + Delta-G solvation = 108.373149 kcal Electronic energy + Delta-G solvation = -30267.990865 eV Core-core repulsion = 26233.447727 eV Total energy + Delta-G solvation = -4034.543138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40773 -40.15942 -38.50439 -36.40816 -35.53175 -33.38651 -32.95491 -31.79333 -31.19666 -30.37157 -28.77251 -27.52806 -26.23887 -25.01932 -23.82722 -22.63302 -21.89024 -21.17945 -20.59810 -20.43515 -19.70451 -18.86334 -18.39394 -16.63160 -16.50980 -16.32099 -15.92949 -15.73196 -15.12930 -14.82998 -14.78178 -14.42132 -14.32431 -13.88946 -13.84595 -13.46328 -13.12574 -12.98528 -12.68799 -12.34323 -12.17222 -12.10819 -12.03343 -11.87060 -11.51960 -11.36258 -11.11003 -10.96393 -10.74836 -10.72155 -10.70644 -10.55909 -10.21183 -10.08513 -9.95322 -9.82190 -9.77312 -9.51404 -9.40128 -9.28375 -8.84675 -8.52153 -6.73543 -5.61129 -2.93549 0.89628 1.27764 1.59597 2.07945 3.16600 3.26542 3.46280 3.50914 3.52831 3.93497 4.02099 4.15308 4.41975 4.51716 4.56537 4.73937 4.83545 4.91886 4.97097 5.07915 5.12853 5.25983 5.37890 5.44201 5.54795 5.61625 5.71955 5.74202 5.81125 5.91055 5.91632 5.93868 6.05954 6.09957 6.23025 6.23832 6.31618 6.35562 6.44381 6.56314 6.65493 6.71640 6.73168 6.92590 7.09594 7.49248 7.63744 7.74711 7.81226 7.92394 8.19631 8.31987 9.30065 9.89948 10.58249 11.50765 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002580 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.438978 B =10848.843919 C =12509.814900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.183 4.183 3 C 0.152 3.848 4 N -0.362 5.362 5 C 0.090 3.910 6 C -0.101 4.101 7 C 0.605 3.395 8 O -0.547 6.547 9 N -0.703 5.703 10 C 0.150 3.850 11 H 0.085 0.915 12 C -0.126 4.126 13 C -0.099 4.099 14 C -0.115 4.115 15 H 0.064 0.936 16 C 0.191 3.809 17 N -0.611 5.611 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.140 3.860 27 C -0.109 4.109 28 H 0.071 0.929 29 C -0.112 4.112 30 N -0.201 5.201 31 N -0.056 5.056 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.204 0.796 38 H 0.410 0.590 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.050 0.950 45 H 0.250 0.750 46 H 0.023 0.977 47 H 0.040 0.960 48 H 0.080 0.920 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 9.066 -24.218 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.202 4.202 3 C 0.031 3.969 4 N -0.146 5.146 5 C -0.067 4.067 6 C -0.240 4.240 7 C 0.389 3.611 8 O -0.424 6.424 9 N -0.354 5.354 10 C 0.046 3.954 11 H 0.103 0.897 12 C -0.164 4.164 13 C -0.137 4.137 14 C -0.134 4.134 15 H 0.082 0.918 16 C 0.067 3.933 17 N -0.338 5.338 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.015 3.985 27 C -0.128 4.128 28 H 0.089 0.911 29 C -0.150 4.150 30 N -0.075 5.075 31 N -0.037 5.037 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.221 0.779 38 H 0.248 0.752 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.099 0.901 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.504 8.760 -23.678 26.338 hybrid contribution -0.112 -0.322 0.351 0.489 sum -7.616 8.438 -23.327 25.949 Atomic orbital electron populations 1.24010 0.95465 1.02904 0.96063 1.22868 0.96409 0.97383 1.03563 1.21104 0.91939 0.98266 0.85554 1.50589 1.06629 1.48240 1.09186 1.23379 0.84640 0.98011 1.00642 1.21543 0.95638 1.16272 0.90519 1.16746 0.84742 0.76587 0.83062 1.90784 1.49353 1.50560 1.51750 1.46072 1.11078 1.70882 1.07414 1.21119 0.80708 0.97456 0.96070 0.89671 1.21935 0.99751 0.94994 0.99756 1.21225 1.01068 0.97397 0.93996 1.22139 0.98642 0.97197 0.95452 0.91806 1.20781 0.97334 0.89837 0.85391 1.45370 1.73542 1.00248 1.14629 1.19084 1.33476 0.92292 0.90313 0.90593 1.24776 1.01819 0.95717 0.98416 1.69966 1.52115 0.99392 1.35619 0.86149 0.78426 0.77582 0.83809 1.21732 1.21799 1.20807 1.21497 0.97974 0.88945 0.90060 1.22061 0.98819 0.95827 0.96133 0.91072 1.21661 1.02140 0.98397 0.92810 1.74723 0.96417 1.09499 1.26837 1.82070 1.16835 1.21558 0.83199 0.87302 0.87883 0.86365 0.87994 0.86857 0.77919 0.75228 0.91928 0.91239 0.92063 0.91982 0.94547 0.93216 0.93932 0.95957 0.94194 0.90146 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 14.32 29.01 0.42 -0.24 16 2 C -0.18 -0.97 9.72 -36.03 -0.35 -1.32 16 3 C 0.15 0.69 6.98 -5.19 -0.04 0.65 16 4 N -0.36 -3.20 3.68 -62.24 -0.23 -3.43 16 5 C 0.09 0.83 11.27 -16.84 -0.19 0.64 16 6 C -0.10 -1.27 6.99 -83.55 -0.58 -1.86 16 7 C 0.60 8.41 7.76 -12.48 -0.10 8.31 16 8 O -0.55 -8.46 16.49 5.28 0.09 -8.38 16 9 N -0.70 -9.58 4.64 -54.68 -0.25 -9.84 16 10 C 0.15 1.98 2.71 -67.75 -0.18 1.80 16 11 H 0.09 1.11 7.52 -51.93 -0.39 0.72 16 12 C -0.13 -1.72 5.43 -26.53 -0.14 -1.86 16 13 C -0.10 -1.58 5.56 -27.08 -0.15 -1.73 16 14 C -0.12 -2.13 2.33 -90.36 -0.21 -2.34 16 15 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 16 C 0.19 4.68 5.07 -3.43 -0.02 4.67 16 17 N -0.61 -15.88 3.48 -169.48 -0.59 -16.47 16 18 C -0.22 -6.37 10.29 -15.06 -0.15 -6.52 16 19 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -27.75 10.36 55.49 0.58 -27.18 16 22 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.14 2.90 7.00 -2.19 -0.02 2.89 16 27 C -0.11 -1.86 2.35 -89.89 -0.21 -2.07 16 28 H 0.07 1.27 6.20 -51.93 -0.32 0.95 16 29 C -0.11 -1.50 5.38 -27.00 -0.15 -1.64 16 30 N -0.20 -2.85 12.04 32.84 0.40 -2.46 16 31 N -0.06 -0.72 13.64 60.35 0.82 0.10 16 32 H 0.11 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.10 0.34 7.84 -52.49 -0.41 -0.07 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.10 0.33 7.79 -51.93 -0.40 -0.07 16 36 H 0.11 0.17 8.08 -51.92 -0.42 -0.25 16 37 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.41 5.80 6.48 -40.82 -0.26 5.54 16 39 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.99 7.60 -51.93 -0.39 0.60 16 44 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 1.02 7.98 -51.93 -0.41 0.61 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -34.94 395.63 -8.00 -42.93 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.57 Total: 2.16 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.17 Total: -1.07 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.72 Total: -59.27 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.94 -8.00 -42.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980192817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.305 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds