Wall clock time and date at job start Wed Apr 1 2020 03:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00021 * 2 1 4 4 N 1.46506 * 109.47404 * 124.99845 * 3 2 1 5 5 C 1.34814 * 126.59653 * 124.99938 * 4 3 2 6 6 C 1.36594 * 106.83896 * 179.97438 * 5 4 3 7 7 C 1.47516 * 125.77009 * 179.97438 * 6 5 4 8 8 O 1.21602 * 120.00018 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00312 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00287 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.02028 * 33.94111 * 10 9 7 12 12 C 1.52525 * 109.03547 * 274.99985 * 10 9 7 13 13 C 1.53847 * 111.58885 * 293.58553 * 12 10 9 14 14 C 1.51428 * 107.04500 * 302.69084 * 13 12 10 15 15 H 1.09001 * 110.25008 * 305.75331 * 14 13 12 16 16 C 1.52322 * 117.46291 * 178.85892 * 14 13 12 17 17 N 1.48241 * 105.86187 * 214.73087 * 16 14 13 18 18 C 1.36938 * 125.78303 * 183.22516 * 17 16 14 19 19 H 1.08004 * 120.00032 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99900 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99988 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46852 * 89.99743 * 22 20 18 24 24 H 1.48496 * 109.47153 * 209.99767 * 22 20 18 25 25 H 1.48497 * 109.46994 * 330.00011 * 22 20 18 26 26 C 1.49760 * 108.90925 * 4.07040 * 17 16 14 27 27 C 1.53063 * 102.92211 * 22.91638 * 26 17 16 28 28 H 1.09002 * 110.56715 * 77.43247 * 27 26 17 29 29 C 1.51621 * 116.66951 * 204.82269 * 27 26 17 30 30 N 1.34402 * 108.45825 * 0.24165 * 6 5 4 31 31 N 1.28766 * 109.52269 * 359.58612 * 30 6 5 32 32 H 1.07994 * 120.00294 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.99801 * 0.02562 * 1 2 3 34 34 H 1.07995 * 119.99955 * 179.97438 * 2 1 3 35 35 H 1.09000 * 109.47187 * 4.99408 * 3 2 1 36 36 H 1.09007 * 109.47175 * 244.99614 * 3 2 1 37 37 H 1.08000 * 126.57535 * 359.97438 * 5 4 3 38 38 H 0.97004 * 119.99796 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.04441 * 54.10940 * 12 10 9 40 40 H 1.08997 * 109.04483 * 173.06802 * 12 10 9 41 41 H 1.09002 * 109.93791 * 62.14539 * 13 12 10 42 42 H 1.09001 * 109.93910 * 183.37373 * 13 12 10 43 43 H 1.08996 * 110.17454 * 333.82877 * 16 14 13 44 44 H 1.09004 * 110.17012 * 95.63605 * 16 14 13 45 45 H 0.96996 * 119.99584 * 180.02562 * 21 20 18 46 46 H 1.08997 * 110.29314 * 264.87254 * 26 17 16 47 47 H 1.09002 * 111.46498 * 141.50033 * 26 17 16 48 48 H 1.08998 * 109.94499 * 57.98245 * 29 27 26 49 49 H 1.09001 * 110.00670 * 296.77937 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3230 1.5497 1.0741 6 6 4.7899 1.4873 2.3563 7 6 6.1938 1.6659 2.7724 8 8 7.0510 1.8903 1.9396 9 7 6.5267 1.5794 4.0755 10 6 7.9210 1.7562 4.4887 11 1 8.3956 2.4872 3.8340 12 6 8.6514 0.4236 4.3584 13 6 8.1132 -0.6168 5.3558 14 6 8.2651 -0.0238 6.7409 15 1 9.2972 0.2842 6.9083 16 6 7.7751 -0.8558 7.9189 17 7 7.2384 0.1132 8.9040 18 6 6.7481 -0.1949 10.1449 19 1 6.3791 0.5890 10.7897 20 6 6.7254 -1.5149 10.5741 21 7 7.1746 -2.4703 9.7881 22 14 6.0572 -1.9352 12.2671 23 1 4.5993 -2.2012 12.1718 24 1 6.7479 -3.1429 12.7861 25 1 6.2931 -0.7954 13.1893 26 6 7.2992 1.4886 8.3145 27 6 7.3252 1.2148 6.8088 28 1 6.3282 0.9619 6.4483 29 6 7.9515 2.2828 5.9336 30 7 3.7548 1.2297 3.1740 31 7 2.6727 1.1367 2.4822 32 1 -0.5400 -0.9352 0.0004 33 1 -0.5400 0.9353 -0.0004 34 1 1.8500 -0.9353 0.0004 35 1 1.3586 2.1316 0.0895 36 1 2.6214 1.4025 -0.9314 37 1 4.9066 1.7376 0.1850 38 1 5.8432 1.3992 4.7398 39 1 8.5218 0.0446 3.3446 40 1 9.7135 0.5802 4.5463 41 1 7.0622 -0.8197 5.1504 42 1 8.6920 -1.5374 5.2812 43 1 6.9887 -1.5380 7.5960 44 1 8.6032 -1.4150 8.3545 45 1 7.1583 -3.3926 10.0879 46 1 8.2121 1.9945 8.6286 47 1 6.4214 2.0766 8.5826 48 1 8.9815 2.4602 6.2430 49 1 7.3778 3.2069 6.0047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980192817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:48 Heat of formation + Delta-G solvation = 84.874911 kcal Electronic energy + Delta-G solvation = -30269.009825 eV Core-core repulsion = 26233.447727 eV Total energy + Delta-G solvation = -4035.562098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.21941 -41.38097 -39.79191 -37.05212 -36.91809 -34.74773 -33.80861 -33.39893 -32.26968 -31.62584 -30.39534 -28.16726 -27.74716 -26.84029 -24.81287 -23.52430 -23.33840 -22.07577 -21.85810 -21.44096 -21.01320 -20.09237 -19.23152 -18.73085 -17.30910 -17.14394 -17.03150 -16.73434 -16.17802 -16.13078 -15.75729 -15.61634 -15.52003 -15.33884 -14.90838 -14.62955 -14.47983 -14.36122 -13.67292 -13.60454 -13.49121 -13.37431 -13.05810 -12.96068 -12.82003 -12.62170 -12.51276 -12.47050 -12.38999 -12.26125 -11.96122 -11.88615 -11.74768 -11.37841 -11.37356 -11.17184 -10.95851 -10.78527 -10.66842 -10.58726 -10.34242 -9.93785 -8.86479 -7.81314 -5.15873 0.16617 0.63960 0.79663 1.44720 1.47315 1.55650 1.59517 2.19095 2.28395 2.50737 3.21682 3.36397 3.44103 3.56865 3.65713 3.74451 3.80325 3.85791 3.87466 3.98350 4.11187 4.18223 4.36541 4.46419 4.49017 4.51985 4.52840 4.63989 4.70710 4.75198 4.79247 4.88569 4.92389 4.97427 5.02809 5.12424 5.16433 5.21746 5.30032 5.39083 5.41991 5.49766 5.55540 5.58385 5.58992 5.65971 5.78117 5.84211 6.20019 6.45296 6.91923 7.11680 7.16428 7.78287 8.45615 9.29147 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002580 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.438978 B =10848.843919 C =12509.814900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.199 4.199 3 C 0.143 3.857 4 N -0.347 5.347 5 C 0.112 3.888 6 C -0.129 4.129 7 C 0.607 3.393 8 O -0.564 6.564 9 N -0.706 5.706 10 C 0.153 3.847 11 H 0.099 0.901 12 C -0.116 4.116 13 C -0.092 4.092 14 C -0.104 4.104 15 H 0.076 0.924 16 C 0.201 3.799 17 N -0.635 5.635 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.073 4.073 21 N -0.953 5.953 22 Si 0.977 3.023 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.135 3.865 27 C -0.092 4.092 28 H 0.060 0.940 29 C -0.100 4.100 30 N -0.233 5.233 31 N -0.089 5.089 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.152 0.848 37 H 0.242 0.758 38 H 0.407 0.593 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.060 0.940 43 H -0.005 1.005 44 H 0.010 0.990 45 H 0.244 0.756 46 H 0.036 0.964 47 H 0.044 0.956 48 H 0.098 0.902 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 11.291 -26.261 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.218 4.218 3 C 0.025 3.975 4 N -0.132 5.132 5 C -0.046 4.046 6 C -0.269 4.269 7 C 0.392 3.608 8 O -0.443 6.443 9 N -0.356 5.356 10 C 0.050 3.950 11 H 0.117 0.883 12 C -0.154 4.154 13 C -0.130 4.130 14 C -0.123 4.123 15 H 0.094 0.906 16 C 0.076 3.924 17 N -0.363 5.363 18 C -0.366 4.366 19 H 0.099 0.901 20 C -0.265 4.265 21 N -0.603 5.603 22 Si 0.805 3.195 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.192 1.192 26 C 0.011 3.989 27 C -0.111 4.111 28 H 0.079 0.921 29 C -0.138 4.138 30 N -0.106 5.106 31 N -0.069 5.069 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.170 0.830 37 H 0.258 0.742 38 H 0.243 0.757 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.014 0.986 44 H 0.028 0.972 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.116 0.884 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.546 11.024 -25.731 28.992 hybrid contribution -0.194 -1.022 0.918 1.387 sum -7.740 10.002 -24.813 27.850 Atomic orbital electron populations 1.24202 0.95393 1.03736 0.94816 1.22888 0.96775 0.97438 1.04692 1.21601 0.92245 0.98283 0.85400 1.50890 1.07209 1.46239 1.08829 1.23928 0.84684 0.95454 1.00564 1.21629 0.95042 1.18346 0.91888 1.16873 0.85164 0.75955 0.82810 1.90762 1.49944 1.51597 1.52005 1.46127 1.11174 1.70834 1.07482 1.21136 0.80564 0.97318 0.96011 0.88326 1.21863 1.00774 0.94259 0.98549 1.21149 1.00399 0.98299 0.93161 1.21963 0.99238 0.96760 0.94331 0.90593 1.20489 0.94587 0.90003 0.87293 1.45746 1.73317 1.02783 1.14411 1.19506 1.32874 0.92624 0.91618 0.90061 1.25652 1.02788 0.95781 1.02284 1.70208 1.53530 0.99256 1.37301 0.85094 0.77423 0.77343 0.79604 1.21537 1.22152 1.19235 1.21716 0.98582 0.86488 0.92112 1.21914 0.98354 0.96405 0.94457 0.92133 1.21615 1.03001 0.97442 0.91710 1.74688 0.97155 1.10569 1.28219 1.81969 1.16810 1.22970 0.85179 0.87153 0.86491 0.87565 0.86323 0.83038 0.74168 0.75686 0.91956 0.89289 0.93570 0.92156 0.98628 0.97191 0.94677 0.94620 0.93789 0.88381 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 14.32 67.78 0.97 -0.11 16 2 C -0.20 -1.82 9.72 25.64 0.25 -1.57 16 3 C 0.14 0.90 6.98 85.63 0.60 1.50 16 4 N -0.35 -5.48 3.68 -350.82 -1.29 -6.78 16 5 C 0.11 1.79 11.27 83.85 0.95 2.73 16 6 C -0.13 -3.14 6.99 40.81 0.29 -2.85 16 7 C 0.61 16.06 7.76 86.69 0.67 16.73 16 8 O -0.56 -16.25 16.49 -4.04 -0.07 -16.32 16 9 N -0.71 -18.39 4.64 -445.15 -2.07 -20.46 16 10 C 0.15 3.65 2.71 45.11 0.12 3.77 16 11 H 0.10 2.21 7.52 -2.39 -0.02 2.19 16 12 C -0.12 -2.92 5.43 30.72 0.17 -2.75 16 13 C -0.09 -2.93 5.56 30.37 0.17 -2.76 16 14 C -0.10 -3.84 2.33 -10.63 -0.02 -3.86 16 15 H 0.08 2.65 7.93 -2.39 -0.02 2.64 16 16 C 0.20 10.34 5.07 85.82 0.44 10.77 16 17 N -0.64 -33.90 3.48 -690.12 -2.40 -36.30 16 18 C -0.24 -13.82 10.29 84.03 0.86 -12.96 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 20 C -0.07 -4.32 5.49 84.86 0.47 -3.85 16 21 N -0.95 -59.96 10.36 21.65 0.22 -59.74 16 22 Si 0.98 47.70 29.55 68.60 2.03 49.72 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 C 0.13 5.50 7.00 85.77 0.60 6.10 16 27 C -0.09 -3.06 2.35 -10.32 -0.02 -3.08 16 28 H 0.06 2.17 6.20 -2.39 -0.01 2.15 16 29 C -0.10 -2.38 5.38 30.42 0.16 -2.21 16 30 N -0.23 -6.65 12.04 -50.00 -0.60 -7.25 16 31 N -0.09 -2.26 13.64 37.02 0.50 -1.76 16 32 H 0.11 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.12 0.53 7.84 -2.91 -0.02 0.50 16 34 H 0.11 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.12 0.41 7.79 -2.39 -0.02 0.39 16 36 H 0.15 -0.19 8.08 -2.38 -0.02 -0.21 16 37 H 0.24 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.41 11.40 6.48 -92.71 -0.60 10.79 16 39 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 1.60 7.89 -2.39 -0.02 1.58 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.00 -0.26 7.60 -2.39 -0.02 -0.28 16 44 H 0.01 0.57 7.30 -2.38 -0.02 0.56 16 45 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.10 2.08 7.98 -2.39 -0.02 2.06 16 49 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.09 395.63 3.34 -76.75 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.35 Total: 16.54 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.66 Total: 5.59 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -5.63 Total: -132.28 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.07 Total: -16.32 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal Total: -80.09 3.34 -76.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980192817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.623 kcal (2) G-P(sol) polarization free energy of solvation -80.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds