Wall clock time and date at job start Wed Apr 1 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.99626 * 2 1 4 4 C 1.54321 * 109.88290 * 121.09748 * 2 1 3 5 5 H 1.08994 * 110.87120 * 23.17414 * 4 2 1 6 6 N 1.46505 * 110.71980 * 259.97225 * 4 2 1 7 7 C 1.36931 * 119.99788 * 160.02489 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.55164 * 102.93990 * 141.61192 * 4 2 1 16 16 C 1.54904 * 101.57948 * 324.49322 * 15 4 2 17 17 N 1.47027 * 109.88053 * 238.90717 * 2 1 3 18 18 C 1.34774 * 125.64938 * 61.60659 * 17 2 1 19 19 O 1.21487 * 119.99705 * 0.02562 * 18 17 2 20 20 C 1.48444 * 120.00121 * 180.02562 * 18 17 2 21 21 C 1.39074 * 120.50803 * 179.72372 * 20 18 17 22 22 C 1.39861 * 118.18798 * 179.73946 * 21 20 18 23 23 N 1.38511 * 120.51331 * 180.23572 * 22 21 20 24 24 C 1.48535 * 110.99768 * 62.90263 * 23 22 21 25 25 C 1.54936 * 103.22309 * 159.72283 * 24 23 22 26 26 C 1.54594 * 102.92090 * 322.58312 * 25 24 23 27 27 C 1.47900 * 110.99990 * 180.30070 * 23 22 21 28 28 N 1.32838 * 118.97032 * 0.53418 * 22 21 20 29 29 C 1.31845 * 120.91468 * 359.72235 * 28 22 21 30 30 N 1.31557 * 122.00894 * 0.02562 * 29 28 22 31 31 H 1.09000 * 109.47085 * 298.90316 * 1 2 3 32 32 H 1.08996 * 109.47173 * 58.89968 * 1 2 3 33 33 H 1.08994 * 109.46996 * 178.90294 * 1 2 3 34 34 H 0.97000 * 119.99792 * 340.02283 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00882 * 82.57234 * 15 4 2 37 37 H 1.09003 * 111.00073 * 206.42275 * 15 4 2 38 38 H 1.09007 * 110.36131 * 155.84800 * 16 15 4 39 39 H 1.08992 * 110.37206 * 278.17145 * 16 15 4 40 40 H 1.07999 * 120.90822 * 359.97211 * 21 20 18 41 41 H 1.08999 * 110.66351 * 278.15555 * 24 23 22 42 42 H 1.08999 * 110.66598 * 41.28360 * 24 23 22 43 43 H 1.09007 * 110.72306 * 204.23106 * 25 24 23 44 44 H 1.08993 * 110.88209 * 81.01711 * 25 24 23 45 45 H 1.08998 * 110.31411 * 263.04069 * 26 25 24 46 46 H 1.09004 * 110.39429 * 140.92114 * 26 25 24 47 47 H 1.08997 * 109.91395 * 333.50746 * 27 23 22 48 48 H 1.08998 * 109.91972 * 94.60640 * 27 23 22 49 49 H 1.08001 * 118.99721 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3065 -1.4458 1.6210 6 7 2.4555 0.1961 2.2875 7 6 2.5576 -0.2226 3.5872 8 1 2.3431 -1.2500 3.8421 9 6 2.9428 0.6720 4.5763 10 7 3.2046 1.9238 4.2657 11 14 3.0895 0.0990 6.3482 12 1 2.7426 -1.3426 6.4326 13 1 4.4827 0.3019 6.8203 14 1 2.1591 0.8822 7.2004 15 6 3.2877 -1.5142 0.6922 16 6 2.8145 -1.8794 -0.7368 17 7 2.0300 -0.7140 -1.1840 18 6 1.8074 -0.3620 -2.4658 19 8 1.1425 0.6229 -2.7184 20 6 2.3746 -1.1776 -3.5688 21 6 2.1467 -0.8272 -4.8952 22 6 2.7088 -1.6267 -5.8957 23 7 2.5166 -1.3193 -7.2325 24 6 3.1145 -0.0013 -7.5668 25 6 3.2798 -0.0673 -9.1059 26 6 3.6898 -1.5383 -9.3468 27 6 3.1941 -2.3025 -8.1052 28 7 3.4248 -2.6889 -5.5440 29 6 3.6124 -2.9890 -4.2739 30 7 3.1053 -2.2605 -3.3030 31 1 -0.3633 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8799 33 1 -0.3633 -1.0274 -0.0197 34 1 2.6485 1.1187 2.0585 35 1 3.4734 2.5490 4.9569 36 1 4.1655 -0.8689 0.6602 37 1 3.4853 -2.4110 1.2795 38 1 3.6717 -2.0337 -1.3924 39 1 2.1887 -2.7714 -0.7129 40 1 1.5550 0.0408 -5.1459 41 1 2.4412 0.8087 -7.2866 42 1 4.0829 0.1163 -7.0805 43 1 4.0651 0.6114 -9.4390 44 1 2.3389 0.1579 -9.6077 45 1 4.7733 -1.6198 -9.4336 46 1 3.2089 -1.9244 -10.2456 47 1 4.0401 -2.7449 -7.5792 48 1 2.4922 -3.0822 -8.4011 49 1 4.2002 -3.8596 -4.0230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986968939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:30 Heat of formation + Delta-G solvation = 59.411668 kcal Electronic energy + Delta-G solvation = -30170.678262 eV Core-core repulsion = 26134.011995 eV Total energy + Delta-G solvation = -4036.666267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71812 -39.99486 -39.00658 -37.45653 -34.54741 -33.97615 -32.98281 -31.52524 -30.85027 -30.35834 -29.53233 -29.09303 -25.56987 -25.17875 -24.46203 -23.09929 -22.79028 -21.80669 -21.29510 -20.25021 -19.51338 -18.02342 -17.81933 -17.18589 -16.55171 -16.18367 -15.85918 -15.65246 -15.52696 -15.22988 -14.75176 -14.63010 -14.31376 -13.94856 -13.61479 -13.59575 -13.28460 -13.09369 -12.93552 -12.73433 -12.69241 -12.14505 -11.90981 -11.88313 -11.74079 -11.65654 -11.28162 -11.11559 -11.10244 -11.02504 -10.92457 -10.80033 -10.54809 -10.33843 -10.24553 -10.17898 -9.92710 -9.71481 -9.37958 -8.97439 -8.90949 -8.40734 -7.01813 -5.81247 -3.11335 0.31976 0.63036 2.67244 2.81038 3.10884 3.41167 3.46906 3.49180 3.60740 3.74799 3.79435 4.05877 4.27294 4.37826 4.52390 4.55324 4.69324 4.77880 4.93349 4.95320 5.15166 5.17467 5.22488 5.27309 5.30677 5.36099 5.41786 5.45384 5.52290 5.61644 5.64624 5.65478 5.75417 5.81471 5.88640 5.95955 6.09092 6.09727 6.24249 6.39928 6.47208 6.52116 6.59388 6.63260 6.66088 6.73581 6.96205 7.63151 7.67240 7.71768 8.15344 8.36125 9.47710 10.02292 10.37148 11.41068 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.002073 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.060732 B =13506.801863 C =13851.052955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.081 0.919 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.241 4.241 8 H 0.073 0.927 9 C -0.012 4.012 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C -0.159 4.159 16 C 0.101 3.899 17 N -0.581 5.581 18 C 0.576 3.424 19 O -0.531 6.531 20 C 0.157 3.843 21 C -0.177 4.177 22 C 0.347 3.653 23 N -0.459 5.459 24 C 0.042 3.958 25 C -0.123 4.123 26 C -0.133 4.133 27 C 0.034 3.966 28 N -0.548 5.548 29 C 0.316 3.684 30 N -0.507 5.507 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.159 0.841 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -9.075 -27.071 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.099 0.901 4 C 0.065 3.935 5 H 0.083 0.917 6 N -0.356 5.356 7 C -0.372 4.372 8 H 0.091 0.909 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.200 4.200 16 C -0.022 4.022 17 N -0.313 5.313 18 C 0.361 3.639 19 O -0.407 6.407 20 C 0.011 3.989 21 C -0.203 4.203 22 C 0.106 3.894 23 N -0.177 5.177 24 C -0.083 4.083 25 C -0.161 4.161 26 C -0.171 4.171 27 C -0.092 4.092 28 N -0.268 5.268 29 C 0.027 3.973 30 N -0.225 5.225 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.177 0.823 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.784 -9.340 -26.941 28.525 hybrid contribution 0.438 0.507 0.870 1.098 sum 1.222 -8.834 -26.070 27.553 Atomic orbital electron populations 1.22052 0.94640 1.01751 1.02851 1.22016 0.94588 0.96985 0.84212 0.90120 1.21257 0.93775 0.91575 0.86937 0.91682 1.42353 1.80989 1.09110 1.03140 1.19246 1.38892 0.95209 0.83825 0.90911 1.24770 1.02173 0.95682 0.98180 1.69676 1.52614 1.03047 1.32456 0.86106 0.77257 0.77706 0.85023 1.20485 1.21872 1.21852 1.23622 1.01077 1.01635 0.93688 1.22719 0.95930 0.87073 0.96442 1.48409 1.50164 1.28465 1.04228 1.17357 0.81141 0.84119 0.81247 1.90783 1.40169 1.26707 1.83070 1.21520 0.92666 0.91656 0.93014 1.22354 1.02800 1.03284 0.91845 1.20183 0.88387 0.89753 0.91104 1.61713 1.50984 1.05335 0.99701 1.23398 0.98760 0.89370 0.96782 1.22520 1.02694 0.96780 0.94139 1.22457 1.01392 0.95133 0.98145 1.22948 0.99369 0.94531 0.92401 1.68232 1.16823 1.19451 1.22315 1.24891 0.93044 0.96831 0.82542 1.68711 1.10756 1.05782 1.37260 0.90884 0.91974 0.92983 0.78028 0.93457 0.90815 0.90581 0.88383 0.91803 0.82297 0.88511 0.92274 0.90132 0.90078 0.90979 0.90490 0.89716 0.89707 0.78096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.10 37.16 0.34 -2.27 16 2 C 0.13 2.25 3.21 -66.95 -0.21 2.03 16 3 H 0.08 1.61 7.69 -51.93 -0.40 1.21 16 4 C 0.18 3.41 3.11 -66.09 -0.21 3.20 16 5 H 0.07 1.26 7.84 -51.93 -0.41 0.85 16 6 N -0.72 -17.37 5.25 -51.65 -0.27 -17.64 16 7 C -0.24 -6.45 9.98 -15.06 -0.15 -6.60 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 11 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C -0.16 -2.68 6.77 -24.58 -0.17 -2.85 16 16 C 0.10 1.46 5.96 -2.53 -0.02 1.45 16 17 N -0.58 -9.48 3.07 -163.90 -0.50 -9.98 16 18 C 0.58 9.43 7.65 -12.06 -0.09 9.34 16 19 O -0.53 -9.84 15.46 5.38 0.08 -9.76 16 20 C 0.16 2.15 6.74 -82.71 -0.56 1.59 16 21 C -0.18 -2.16 9.14 -38.66 -0.35 -2.51 16 22 C 0.35 3.79 6.21 -154.85 -0.96 2.83 16 23 N -0.46 -4.18 5.30 -169.04 -0.90 -5.08 16 24 C 0.04 0.30 6.09 -1.90 -0.01 0.29 16 25 C -0.12 -0.63 7.06 -24.87 -0.18 -0.81 16 26 C -0.13 -0.70 6.93 -25.38 -0.18 -0.87 16 27 C 0.03 0.26 6.36 -2.76 -0.02 0.24 16 28 N -0.55 -5.78 8.28 -13.82 -0.11 -5.89 16 29 C 0.32 3.15 12.27 -92.31 -1.13 2.02 16 30 N -0.51 -6.17 6.79 -11.22 -0.08 -6.25 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.07 6.90 -51.93 -0.36 0.71 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.39 10.10 7.51 -40.82 -0.31 9.79 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.10 1.33 5.92 -51.93 -0.31 1.03 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.16 1.88 7.73 -52.49 -0.41 1.47 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.45 7.99 -51.93 -0.42 0.03 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.71 6.53 -51.93 -0.34 0.37 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -31.56 392.02 -11.71 -43.27 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.56 Total: 8.75 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -3.99 Total: 6.65 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.14 Total: -71.78 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.56 -11.71 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986968939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.683 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds