Wall clock time and date at job start Wed Apr 1 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.99626 * 2 1 4 4 C 1.54321 * 109.88290 * 121.09748 * 2 1 3 5 5 H 1.08994 * 110.87120 * 23.17414 * 4 2 1 6 6 N 1.46505 * 110.71980 * 259.97225 * 4 2 1 7 7 C 1.36931 * 119.99788 * 160.02489 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.55164 * 102.93990 * 141.61192 * 4 2 1 16 16 C 1.54904 * 101.57948 * 324.49322 * 15 4 2 17 17 N 1.47027 * 109.88053 * 238.90717 * 2 1 3 18 18 C 1.34774 * 125.64938 * 61.60659 * 17 2 1 19 19 O 1.21487 * 119.99705 * 0.02562 * 18 17 2 20 20 C 1.48444 * 120.00121 * 180.02562 * 18 17 2 21 21 C 1.39074 * 120.50803 * 179.72372 * 20 18 17 22 22 C 1.39861 * 118.18798 * 179.73946 * 21 20 18 23 23 N 1.38511 * 120.51331 * 180.23572 * 22 21 20 24 24 C 1.48535 * 110.99768 * 62.90263 * 23 22 21 25 25 C 1.54936 * 103.22309 * 159.72283 * 24 23 22 26 26 C 1.54594 * 102.92090 * 322.58312 * 25 24 23 27 27 C 1.47900 * 110.99990 * 180.30070 * 23 22 21 28 28 N 1.32838 * 118.97032 * 0.53418 * 22 21 20 29 29 C 1.31845 * 120.91468 * 359.72235 * 28 22 21 30 30 N 1.31557 * 122.00894 * 0.02562 * 29 28 22 31 31 H 1.09000 * 109.47085 * 298.90316 * 1 2 3 32 32 H 1.08996 * 109.47173 * 58.89968 * 1 2 3 33 33 H 1.08994 * 109.46996 * 178.90294 * 1 2 3 34 34 H 0.97000 * 119.99792 * 340.02283 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00882 * 82.57234 * 15 4 2 37 37 H 1.09003 * 111.00073 * 206.42275 * 15 4 2 38 38 H 1.09007 * 110.36131 * 155.84800 * 16 15 4 39 39 H 1.08992 * 110.37206 * 278.17145 * 16 15 4 40 40 H 1.07999 * 120.90822 * 359.97211 * 21 20 18 41 41 H 1.08999 * 110.66351 * 278.15555 * 24 23 22 42 42 H 1.08999 * 110.66598 * 41.28360 * 24 23 22 43 43 H 1.09007 * 110.72306 * 204.23106 * 25 24 23 44 44 H 1.08993 * 110.88209 * 81.01711 * 25 24 23 45 45 H 1.08998 * 110.31411 * 263.04069 * 26 25 24 46 46 H 1.09004 * 110.39429 * 140.92114 * 26 25 24 47 47 H 1.08997 * 109.91395 * 333.50746 * 27 23 22 48 48 H 1.08998 * 109.91972 * 94.60640 * 27 23 22 49 49 H 1.08001 * 118.99721 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3065 -1.4458 1.6210 6 7 2.4555 0.1961 2.2875 7 6 2.5576 -0.2226 3.5872 8 1 2.3431 -1.2500 3.8421 9 6 2.9428 0.6720 4.5763 10 7 3.2046 1.9238 4.2657 11 14 3.0895 0.0990 6.3482 12 1 2.7426 -1.3426 6.4326 13 1 4.4827 0.3019 6.8203 14 1 2.1591 0.8822 7.2004 15 6 3.2877 -1.5142 0.6922 16 6 2.8145 -1.8794 -0.7368 17 7 2.0300 -0.7140 -1.1840 18 6 1.8074 -0.3620 -2.4658 19 8 1.1425 0.6229 -2.7184 20 6 2.3746 -1.1776 -3.5688 21 6 2.1467 -0.8272 -4.8952 22 6 2.7088 -1.6267 -5.8957 23 7 2.5166 -1.3193 -7.2325 24 6 3.1145 -0.0013 -7.5668 25 6 3.2798 -0.0673 -9.1059 26 6 3.6898 -1.5383 -9.3468 27 6 3.1941 -2.3025 -8.1052 28 7 3.4248 -2.6889 -5.5440 29 6 3.6124 -2.9890 -4.2739 30 7 3.1053 -2.2605 -3.3030 31 1 -0.3633 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8799 33 1 -0.3633 -1.0274 -0.0197 34 1 2.6485 1.1187 2.0585 35 1 3.4734 2.5490 4.9569 36 1 4.1655 -0.8689 0.6602 37 1 3.4853 -2.4110 1.2795 38 1 3.6717 -2.0337 -1.3924 39 1 2.1887 -2.7714 -0.7129 40 1 1.5550 0.0408 -5.1459 41 1 2.4412 0.8087 -7.2866 42 1 4.0829 0.1163 -7.0805 43 1 4.0651 0.6114 -9.4390 44 1 2.3389 0.1579 -9.6077 45 1 4.7733 -1.6198 -9.4336 46 1 3.2089 -1.9244 -10.2456 47 1 4.0401 -2.7449 -7.5792 48 1 2.4922 -3.0822 -8.4011 49 1 4.2002 -3.8596 -4.0230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986968939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:29 Heat of formation + Delta-G solvation = 40.907271 kcal Electronic energy + Delta-G solvation = -30171.480673 eV Core-core repulsion = 26134.011995 eV Total energy + Delta-G solvation = -4037.468678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.60046 -41.19902 -39.77858 -38.86608 -36.00103 -35.15779 -33.84810 -33.24711 -32.24461 -31.09059 -30.85443 -30.00549 -26.88727 -26.57694 -25.29146 -24.77138 -23.91143 -22.68311 -21.90909 -21.57639 -20.74460 -19.29770 -18.83042 -18.73117 -17.61223 -17.23710 -16.84983 -16.66173 -16.61373 -16.36089 -16.06937 -15.65986 -15.44133 -15.37193 -14.94455 -14.76657 -14.55236 -14.19877 -14.08677 -13.66470 -13.65438 -13.33692 -13.28656 -13.14194 -12.94026 -12.69265 -12.57535 -12.37705 -12.22971 -12.14287 -12.11203 -11.97286 -11.84288 -11.72089 -11.62948 -11.46619 -11.36434 -11.12292 -10.93827 -10.32026 -9.79218 -9.66003 -9.01442 -7.93238 -5.23066 -0.66782 -0.20621 1.49875 1.50643 1.55567 1.60071 1.62306 2.29470 2.57417 2.67065 2.76106 3.05612 3.37434 3.42171 3.59489 3.67615 3.75357 3.78112 3.78611 3.97975 4.06903 4.14509 4.18475 4.25737 4.35877 4.42220 4.44405 4.45840 4.53942 4.62312 4.65927 4.80494 4.84536 4.89223 4.92305 5.00707 5.04972 5.10969 5.14051 5.18490 5.20834 5.23436 5.35092 5.41666 5.45754 5.56408 5.77035 5.83138 6.26848 6.36622 6.76664 6.94642 7.33667 8.04994 8.29317 9.30465 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.002073 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.060732 B =13506.801863 C =13851.052955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.131 3.869 3 H 0.053 0.947 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.728 5.728 7 C -0.233 4.233 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.261 1.261 13 H -0.296 1.296 14 H -0.297 1.297 15 C -0.149 4.149 16 C 0.113 3.887 17 N -0.584 5.584 18 C 0.573 3.427 19 O -0.561 6.561 20 C 0.144 3.856 21 C -0.183 4.183 22 C 0.352 3.648 23 N -0.467 5.467 24 C 0.038 3.962 25 C -0.118 4.118 26 C -0.128 4.128 27 C 0.032 3.968 28 N -0.548 5.548 29 C 0.321 3.679 30 N -0.516 5.516 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.155 0.845 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -11.657 -28.779 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.071 0.929 4 C 0.062 3.938 5 H 0.090 0.910 6 N -0.368 5.368 7 C -0.365 4.365 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.186 1.186 13 H -0.224 1.224 14 H -0.225 1.225 15 C -0.190 4.190 16 C -0.008 4.008 17 N -0.315 5.315 18 C 0.360 3.640 19 O -0.439 6.439 20 C 0.000 4.000 21 C -0.209 4.209 22 C 0.109 3.891 23 N -0.185 5.185 24 C -0.087 4.087 25 C -0.156 4.156 26 C -0.166 4.166 27 C -0.094 4.094 28 N -0.268 5.268 29 C 0.033 3.967 30 N -0.235 5.235 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.173 0.827 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.293 -11.991 -28.692 31.123 hybrid contribution 0.262 1.260 1.234 1.783 sum 1.555 -10.731 -27.457 29.521 Atomic orbital electron populations 1.21945 0.93735 1.02511 1.02084 1.21755 0.95219 0.95630 0.84708 0.92883 1.21427 0.95006 0.91054 0.86303 0.91041 1.42513 1.81312 1.09287 1.03656 1.19650 1.36618 0.95430 0.84781 0.89822 1.25584 1.03258 0.95916 1.02201 1.69840 1.54797 1.04276 1.33279 0.85067 0.76499 0.78000 0.80143 1.18553 1.22376 1.22484 1.23455 0.98914 1.01266 0.95393 1.22751 0.96523 0.86801 0.94753 1.48435 1.50393 1.28792 1.03882 1.17778 0.80590 0.83966 0.81630 1.90756 1.41501 1.28100 1.83580 1.21106 0.94095 0.92489 0.92339 1.22333 1.03236 1.03604 0.91711 1.20334 0.87666 0.89399 0.91681 1.61721 1.51221 1.06602 0.99001 1.23506 0.98368 0.88428 0.98395 1.22538 1.03520 0.97149 0.92344 1.22458 1.02011 0.94704 0.97419 1.23020 0.98928 0.94482 0.92962 1.68366 1.16606 1.19243 1.22593 1.25653 0.92144 0.96992 0.81925 1.68639 1.11129 1.05592 1.38141 0.91721 0.92610 0.91375 0.79678 0.94150 0.92736 0.89204 0.86957 0.89813 0.82685 0.88485 0.92708 0.88557 0.89681 0.90103 0.89257 0.90423 0.89797 0.74370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.10 71.98 0.65 -4.24 16 2 C 0.13 4.77 3.21 45.34 0.15 4.92 16 3 H 0.05 2.23 7.69 -2.39 -0.02 2.21 16 4 C 0.17 6.59 3.11 46.18 0.14 6.73 16 5 H 0.07 2.68 7.84 -2.39 -0.02 2.66 16 6 N -0.73 -35.93 5.25 -317.32 -1.67 -37.60 16 7 C -0.23 -12.48 9.98 84.04 0.84 -11.64 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 10 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 11 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 12 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 13 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 14 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 15 C -0.15 -4.87 6.77 31.99 0.22 -4.66 16 16 C 0.11 3.07 5.96 86.85 0.52 3.59 16 17 N -0.58 -18.81 3.07 -790.75 -2.42 -21.23 16 18 C 0.57 18.81 7.65 86.96 0.67 19.47 16 19 O -0.56 -21.35 15.46 -3.67 -0.06 -21.41 16 20 C 0.14 3.85 6.74 41.84 0.28 4.13 16 21 C -0.18 -4.37 9.14 22.86 0.21 -4.16 16 22 C 0.35 7.23 6.21 133.28 0.83 8.06 16 23 N -0.47 -7.88 5.30 -688.73 -3.65 -11.53 16 24 C 0.04 0.49 6.09 86.65 0.53 1.02 16 25 C -0.12 -0.95 7.06 31.80 0.22 -0.72 16 26 C -0.13 -1.02 6.93 31.47 0.22 -0.80 16 27 C 0.03 0.42 6.36 86.45 0.55 0.97 16 28 N -0.55 -10.41 8.28 -197.65 -1.64 -12.05 16 29 C 0.32 5.54 12.27 180.94 2.22 7.76 16 30 N -0.52 -11.54 6.79 -189.40 -1.29 -12.82 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.95 6.90 -2.39 -0.02 1.93 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.37 20.22 7.51 -92.71 -0.70 19.53 16 35 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.11 2.80 5.92 -2.38 -0.01 2.78 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.16 3.73 7.73 -2.91 -0.02 3.71 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 0.77 7.99 -2.39 -0.02 0.75 16 43 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 1.15 6.53 -2.39 -0.02 1.13 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 49 H 0.24 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -69.03 392.02 0.57 -68.46 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.27 Total: 33.20 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 8.71 Total: 26.53 kcal Atomic # 7 Polarization: -143.88 SS G_CDS: -10.38 Total: -154.26 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.03 0.57 -68.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986968939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.370 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds