Wall clock time and date at job start Wed Apr 1 2020 03:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87492 * 2 1 4 4 C 1.54319 * 109.88686 * 238.97783 * 2 1 3 5 5 H 1.09008 * 110.71886 * 336.60380 * 4 2 1 6 6 N 1.46507 * 110.71902 * 99.69209 * 4 2 1 7 7 C 1.36936 * 119.99981 * 205.00207 * 6 4 2 8 8 H 1.07992 * 119.99927 * 359.97438 * 7 6 4 9 9 C 1.38816 * 119.99767 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00028 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99976 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47394 * 89.99590 * 11 9 7 13 13 H 1.48495 * 109.47305 * 209.99766 * 11 9 7 14 14 H 1.48507 * 109.47285 * 329.99705 * 11 9 7 15 15 C 1.55151 * 102.94793 * 218.23427 * 4 2 1 16 16 C 1.54912 * 101.58209 * 35.50482 * 15 4 2 17 17 N 1.47022 * 110.01075 * 121.09211 * 2 1 3 18 18 C 1.34773 * 125.65195 * 298.41266 * 17 2 1 19 19 O 1.21523 * 120.00118 * 359.97438 * 18 17 2 20 20 C 1.48133 * 120.00376 * 179.97438 * 18 17 2 21 21 C 1.39248 * 120.04660 * 180.02562 * 20 18 17 22 22 N 1.32192 * 120.06182 * 179.97438 * 21 20 18 23 23 C 1.31928 * 120.16988 * 0.02562 * 22 21 20 24 24 C 1.39664 * 120.09088 * 0.03430 * 23 22 21 25 25 N 1.38978 * 120.03294 * 179.97438 * 24 23 22 26 26 C 1.48532 * 111.00198 * 188.05637 * 25 24 23 27 27 C 1.54936 * 103.22517 * 159.71941 * 26 25 24 28 28 C 1.54588 * 102.92260 * 322.58490 * 27 26 25 29 29 C 1.47906 * 110.99844 * 305.45444 * 25 24 23 30 30 N 1.32342 * 119.93540 * 359.67030 * 24 23 22 31 31 H 1.09008 * 109.46749 * 180.70264 * 1 2 3 32 32 H 1.08996 * 109.47419 * 300.70172 * 1 2 3 33 33 H 1.09002 * 109.46968 * 60.71087 * 1 2 3 34 34 H 0.96998 * 119.99267 * 25.00793 * 6 4 2 35 35 H 0.96994 * 119.99610 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00777 * 153.57329 * 15 4 2 37 37 H 1.08994 * 111.00730 * 277.39383 * 15 4 2 38 38 H 1.09001 * 110.36937 * 81.82535 * 16 15 4 39 39 H 1.08993 * 110.36994 * 204.15980 * 16 15 4 40 40 H 1.07995 * 119.96912 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.95688 * 180.02562 * 23 22 21 42 42 H 1.09002 * 110.66507 * 278.15593 * 26 25 24 43 43 H 1.09001 * 110.66515 * 41.28594 * 26 25 24 44 44 H 1.09002 * 110.72362 * 204.22493 * 27 26 25 45 45 H 1.09004 * 110.72318 * 80.95267 * 27 26 25 46 46 H 1.09000 * 110.31050 * 263.04082 * 28 27 26 47 47 H 1.09008 * 110.38840 * 140.91979 * 28 27 26 48 48 H 1.09000 * 109.91689 * 333.51106 * 29 25 24 49 49 H 1.09000 * 109.91369 * 94.80064 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2436 5 1 1.3061 -1.4458 -1.6185 6 7 2.4482 0.1989 -2.2902 7 6 2.4491 -0.1925 -3.6024 8 1 2.1604 -1.1992 -3.8658 9 6 2.8222 0.7045 -4.5940 10 7 3.1746 1.9313 -4.2729 11 14 2.8228 0.1708 -6.3840 12 1 1.4920 0.4453 -6.9829 13 1 3.8645 0.9260 -7.1254 14 1 3.1125 -1.2834 -6.4670 15 6 3.2900 -1.5101 -0.6953 16 6 2.8196 -1.8770 0.7344 17 7 2.0331 -0.7134 1.1830 18 6 1.8123 -0.3618 2.4652 19 8 1.1462 0.6223 2.7193 20 6 2.3814 -1.1750 3.5648 21 6 2.1534 -0.8129 4.8899 22 7 2.6607 -1.5386 5.8714 23 6 3.3848 -2.6075 5.5998 24 6 3.6188 -2.9762 4.2732 25 7 4.3821 -4.1021 3.9884 26 6 4.6648 -4.1995 2.5335 27 6 5.8982 -5.1354 2.4740 28 6 6.7173 -4.7071 3.7130 29 6 5.7021 -4.0291 4.6517 30 7 3.1078 -2.2557 3.2876 31 1 -0.3633 -1.0277 0.0126 32 1 -0.3634 0.5247 0.8836 33 1 -0.3633 0.5028 -0.8963 34 1 2.7079 1.1030 -2.0535 35 1 3.4350 2.5581 -4.9658 36 1 3.4888 -2.4063 -1.2831 37 1 4.1666 -0.8630 -0.6647 38 1 2.1956 -2.7704 0.7109 39 1 3.6778 -2.0296 1.3887 40 1 1.5615 0.0617 5.1159 41 1 3.7973 -3.1982 6.4044 42 1 3.8199 -4.6425 2.0063 43 1 4.9055 -3.2193 2.1219 44 1 6.4662 -4.9672 1.5590 45 1 5.5945 -6.1792 2.5541 46 1 7.4968 -4.0014 3.4258 47 1 7.1569 -5.5790 4.1976 48 1 5.9810 -2.9874 4.8101 49 1 5.6681 -4.5563 5.6051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987132411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:42 Heat of formation + Delta-G solvation = 58.097906 kcal Electronic energy + Delta-G solvation = -31074.219894 eV Core-core repulsion = 27037.496658 eV Total energy + Delta-G solvation = -4036.723236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81307 -39.91234 -39.02178 -37.41528 -34.87757 -34.05749 -33.23850 -31.50872 -30.90386 -29.75238 -29.59798 -29.02808 -25.72063 -25.23363 -24.52476 -23.07316 -22.68730 -21.63112 -21.35556 -20.28801 -19.41320 -18.08530 -17.48058 -17.23686 -17.03429 -16.71622 -16.32143 -16.04544 -15.38192 -14.93460 -14.58464 -14.43699 -13.97016 -13.71225 -13.64374 -13.41236 -13.29548 -13.01730 -12.91650 -12.82172 -12.68235 -12.27928 -12.12031 -11.90555 -11.84286 -11.54306 -11.46702 -11.35726 -11.14018 -11.04581 -10.97127 -10.81314 -10.60441 -10.36657 -10.33215 -10.19732 -9.97464 -9.73605 -9.29180 -8.93405 -8.75639 -8.38918 -7.05072 -5.83568 -3.13989 0.16333 0.73664 2.62151 2.87055 3.04351 3.39654 3.44921 3.46620 3.54948 3.75145 3.95397 4.07006 4.18712 4.31584 4.49983 4.53057 4.66587 4.83695 4.84104 4.98028 5.01863 5.09957 5.20108 5.23245 5.35063 5.39711 5.41631 5.54308 5.57863 5.62110 5.64184 5.65446 5.72917 5.82679 5.86100 6.00173 6.05097 6.08221 6.16189 6.33084 6.44429 6.49825 6.59244 6.59961 6.68793 6.89806 6.92185 7.36858 7.63531 7.65295 8.14662 8.33693 9.45219 9.99435 10.34338 11.38586 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.003025 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.907712 B = 9253.219471 C =11046.690851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.160 4.160 16 C 0.101 3.899 17 N -0.583 5.583 18 C 0.581 3.419 19 O -0.531 6.531 20 C 0.071 3.929 21 C 0.074 3.926 22 N -0.420 5.420 23 C 0.059 3.941 24 C 0.253 3.747 25 N -0.453 5.453 26 C 0.042 3.958 27 C -0.128 4.128 28 C -0.131 4.131 29 C 0.040 3.960 30 N -0.442 5.442 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.183 0.817 41 H 0.173 0.827 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -14.428 19.908 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.201 4.201 16 C -0.022 4.022 17 N -0.315 5.315 18 C 0.366 3.634 19 O -0.408 6.408 20 C -0.070 4.070 21 C -0.085 4.085 22 N -0.132 5.132 23 C -0.107 4.107 24 C 0.016 3.984 25 N -0.171 5.171 26 C -0.084 4.084 27 C -0.166 4.166 28 C -0.169 4.169 29 C -0.086 4.086 30 N -0.165 5.165 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.200 0.800 41 H 0.190 0.810 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.075 0.925 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.407 -14.381 20.063 25.075 hybrid contribution 0.478 0.484 -1.150 1.336 sum 4.884 -13.897 18.913 23.973 Atomic orbital electron populations 1.22043 0.94633 1.01683 1.02865 1.22073 0.94636 0.97031 0.84263 0.90172 1.21237 0.93685 0.91566 0.86985 0.91446 1.42344 1.79562 1.11623 1.01848 1.19210 1.38594 0.96806 0.82863 0.90978 1.24765 1.01913 0.95855 0.98094 1.69666 1.51275 1.04488 1.32302 0.86182 0.77297 0.77582 0.85043 1.21637 1.21769 1.20691 1.23631 1.01211 1.01649 0.93622 1.22765 0.95700 0.87379 0.96384 1.48400 1.50211 1.28497 1.04360 1.17252 0.80990 0.84018 0.81119 1.90796 1.40286 1.26735 1.82993 1.22121 0.96553 0.93221 0.95140 1.23625 0.97407 0.99722 0.87777 1.68518 1.05740 1.03901 1.35090 1.23575 0.97097 0.94783 0.95250 1.21165 0.96538 0.89565 0.91119 1.61837 1.14623 1.29574 1.11106 1.23369 0.98788 1.00379 0.85859 1.22573 0.95677 1.00130 0.98217 1.22426 0.97527 1.01012 0.95943 1.23038 0.85762 1.00889 0.98896 1.68644 1.09186 1.04376 1.34279 0.93074 0.91948 0.90888 0.78002 0.93368 0.90600 0.90899 0.91957 0.88824 0.80027 0.81027 0.88822 0.90936 0.90001 0.90363 0.90781 0.90276 0.92490 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.11 37.16 0.34 -2.25 16 2 C 0.12 2.20 3.20 -66.96 -0.21 1.98 16 3 H 0.08 1.59 7.72 -51.93 -0.40 1.19 16 4 C 0.18 3.38 3.13 -66.10 -0.21 3.17 16 5 H 0.07 1.29 7.80 -51.92 -0.41 0.89 16 6 N -0.71 -17.14 5.23 -51.65 -0.27 -17.41 16 7 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 11 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C -0.16 -2.62 6.77 -24.58 -0.17 -2.78 16 16 C 0.10 1.42 5.94 -2.52 -0.01 1.40 16 17 N -0.58 -9.37 3.07 -164.01 -0.50 -9.87 16 18 C 0.58 9.40 7.64 -12.20 -0.09 9.30 16 19 O -0.53 -9.74 15.39 5.35 0.08 -9.65 16 20 C 0.07 0.98 6.71 -82.86 -0.56 0.42 16 21 C 0.07 0.91 10.76 -17.02 -0.18 0.73 16 22 N -0.42 -4.81 10.48 -12.54 -0.13 -4.95 16 23 C 0.06 0.57 10.40 -16.98 -0.18 0.39 16 24 C 0.25 2.64 6.20 -154.89 -0.96 1.68 16 25 N -0.45 -3.88 5.33 -169.09 -0.90 -4.79 16 26 C 0.04 0.36 5.69 -1.90 -0.01 0.35 16 27 C -0.13 -0.80 7.06 -24.88 -0.18 -0.97 16 28 C -0.13 -0.69 6.93 -25.38 -0.18 -0.87 16 29 C 0.04 0.25 5.90 -2.75 -0.02 0.23 16 30 N -0.44 -5.44 5.35 -8.81 -0.05 -5.49 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.06 1.07 6.90 -51.93 -0.36 0.71 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.39 10.02 7.56 -40.82 -0.31 9.71 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.24 3.98 -51.93 -0.21 1.03 16 40 H 0.18 2.09 7.63 -52.49 -0.40 1.69 16 41 H 0.17 1.13 7.84 -52.49 -0.41 0.71 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.71 5.81 -51.93 -0.30 0.41 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 48 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 49 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -30.97 388.29 -10.46 -41.43 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.39 Total: 9.03 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.86 Total: 5.80 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.13 Total: -69.20 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.97 -10.46 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987132411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.531 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds