Wall clock time and date at job start Wed Apr 1 2020 03:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87492 * 2 1 4 4 C 1.54319 * 109.88686 * 238.97783 * 2 1 3 5 5 H 1.09008 * 110.71886 * 336.60380 * 4 2 1 6 6 N 1.46507 * 110.71902 * 99.69209 * 4 2 1 7 7 C 1.36936 * 119.99981 * 205.00207 * 6 4 2 8 8 H 1.07992 * 119.99927 * 359.97438 * 7 6 4 9 9 C 1.38816 * 119.99767 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00028 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99976 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47394 * 89.99590 * 11 9 7 13 13 H 1.48495 * 109.47305 * 209.99766 * 11 9 7 14 14 H 1.48507 * 109.47285 * 329.99705 * 11 9 7 15 15 C 1.55151 * 102.94793 * 218.23427 * 4 2 1 16 16 C 1.54912 * 101.58209 * 35.50482 * 15 4 2 17 17 N 1.47022 * 110.01075 * 121.09211 * 2 1 3 18 18 C 1.34773 * 125.65195 * 298.41266 * 17 2 1 19 19 O 1.21523 * 120.00118 * 359.97438 * 18 17 2 20 20 C 1.48133 * 120.00376 * 179.97438 * 18 17 2 21 21 C 1.39248 * 120.04660 * 180.02562 * 20 18 17 22 22 N 1.32192 * 120.06182 * 179.97438 * 21 20 18 23 23 C 1.31928 * 120.16988 * 0.02562 * 22 21 20 24 24 C 1.39664 * 120.09088 * 0.03430 * 23 22 21 25 25 N 1.38978 * 120.03294 * 179.97438 * 24 23 22 26 26 C 1.48532 * 111.00198 * 188.05637 * 25 24 23 27 27 C 1.54936 * 103.22517 * 159.71941 * 26 25 24 28 28 C 1.54588 * 102.92260 * 322.58490 * 27 26 25 29 29 C 1.47906 * 110.99844 * 305.45444 * 25 24 23 30 30 N 1.32342 * 119.93540 * 359.67030 * 24 23 22 31 31 H 1.09008 * 109.46749 * 180.70264 * 1 2 3 32 32 H 1.08996 * 109.47419 * 300.70172 * 1 2 3 33 33 H 1.09002 * 109.46968 * 60.71087 * 1 2 3 34 34 H 0.96998 * 119.99267 * 25.00793 * 6 4 2 35 35 H 0.96994 * 119.99610 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00777 * 153.57329 * 15 4 2 37 37 H 1.08994 * 111.00730 * 277.39383 * 15 4 2 38 38 H 1.09001 * 110.36937 * 81.82535 * 16 15 4 39 39 H 1.08993 * 110.36994 * 204.15980 * 16 15 4 40 40 H 1.07995 * 119.96912 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.95688 * 180.02562 * 23 22 21 42 42 H 1.09002 * 110.66507 * 278.15593 * 26 25 24 43 43 H 1.09001 * 110.66515 * 41.28594 * 26 25 24 44 44 H 1.09002 * 110.72362 * 204.22493 * 27 26 25 45 45 H 1.09004 * 110.72318 * 80.95267 * 27 26 25 46 46 H 1.09000 * 110.31050 * 263.04082 * 28 27 26 47 47 H 1.09008 * 110.38840 * 140.91979 * 28 27 26 48 48 H 1.09000 * 109.91689 * 333.51106 * 29 25 24 49 49 H 1.09000 * 109.91369 * 94.80064 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2436 5 1 1.3061 -1.4458 -1.6185 6 7 2.4482 0.1989 -2.2902 7 6 2.4491 -0.1925 -3.6024 8 1 2.1604 -1.1992 -3.8658 9 6 2.8222 0.7045 -4.5940 10 7 3.1746 1.9313 -4.2729 11 14 2.8228 0.1708 -6.3840 12 1 1.4920 0.4453 -6.9829 13 1 3.8645 0.9260 -7.1254 14 1 3.1125 -1.2834 -6.4670 15 6 3.2900 -1.5101 -0.6953 16 6 2.8196 -1.8770 0.7344 17 7 2.0331 -0.7134 1.1830 18 6 1.8123 -0.3618 2.4652 19 8 1.1462 0.6223 2.7193 20 6 2.3814 -1.1750 3.5648 21 6 2.1534 -0.8129 4.8899 22 7 2.6607 -1.5386 5.8714 23 6 3.3848 -2.6075 5.5998 24 6 3.6188 -2.9762 4.2732 25 7 4.3821 -4.1021 3.9884 26 6 4.6648 -4.1995 2.5335 27 6 5.8982 -5.1354 2.4740 28 6 6.7173 -4.7071 3.7130 29 6 5.7021 -4.0291 4.6517 30 7 3.1078 -2.2557 3.2876 31 1 -0.3633 -1.0277 0.0126 32 1 -0.3634 0.5247 0.8836 33 1 -0.3633 0.5028 -0.8963 34 1 2.7079 1.1030 -2.0535 35 1 3.4350 2.5581 -4.9658 36 1 3.4888 -2.4063 -1.2831 37 1 4.1666 -0.8630 -0.6647 38 1 2.1956 -2.7704 0.7109 39 1 3.6778 -2.0296 1.3887 40 1 1.5615 0.0617 5.1159 41 1 3.7973 -3.1982 6.4044 42 1 3.8199 -4.6425 2.0063 43 1 4.9055 -3.2193 2.1219 44 1 6.4662 -4.9672 1.5590 45 1 5.5945 -6.1792 2.5541 46 1 7.4968 -4.0014 3.4258 47 1 7.1569 -5.5790 4.1976 48 1 5.9810 -2.9874 4.8101 49 1 5.6681 -4.5563 5.6051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987132411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:41 Heat of formation + Delta-G solvation = 38.047338 kcal Electronic energy + Delta-G solvation = -31075.089352 eV Core-core repulsion = 27037.496658 eV Total energy + Delta-G solvation = -4037.592694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70382 -41.13346 -39.78402 -38.78320 -36.09921 -35.50864 -34.07981 -33.20048 -32.27364 -30.92655 -30.41893 -30.02314 -26.94419 -26.62545 -25.48289 -24.69500 -23.86986 -22.42706 -22.02791 -21.61014 -20.64333 -19.26753 -18.93850 -18.40436 -17.87575 -17.61335 -17.30516 -17.18336 -16.56544 -16.48627 -15.86550 -15.47335 -15.30260 -15.05221 -14.81931 -14.55165 -14.35678 -14.28027 -13.84170 -13.66331 -13.60546 -13.46294 -13.36460 -13.23050 -13.01681 -12.79888 -12.60584 -12.44808 -12.36488 -12.23998 -12.20504 -12.06580 -12.05368 -11.74348 -11.65391 -11.45554 -11.40322 -11.04381 -10.92285 -10.23878 -9.81669 -9.41395 -9.03057 -7.93864 -5.24066 -0.76803 -0.13189 1.49674 1.51229 1.51581 1.59306 1.66592 2.21889 2.57155 2.58161 2.85536 3.09059 3.29315 3.37854 3.52158 3.64790 3.71489 3.75377 3.86285 3.95637 4.03232 4.08730 4.16861 4.25453 4.29401 4.35596 4.39483 4.51180 4.54241 4.63445 4.65620 4.80122 4.86469 4.91149 4.98928 4.99580 5.02459 5.03436 5.16686 5.18930 5.20008 5.22454 5.29688 5.40562 5.47672 5.54460 5.75874 6.07546 6.25788 6.33894 6.52274 6.87955 7.32817 8.03607 8.28273 9.29564 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.003025 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.907712 B = 9253.219471 C =11046.690851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.129 3.871 3 H 0.052 0.948 4 C 0.173 3.827 5 H 0.073 0.927 6 N -0.727 5.727 7 C -0.237 4.237 8 H 0.083 0.917 9 C -0.074 4.074 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.299 1.299 14 H -0.265 1.265 15 C -0.149 4.149 16 C 0.114 3.886 17 N -0.587 5.587 18 C 0.579 3.421 19 O -0.561 6.561 20 C 0.052 3.948 21 C 0.072 3.928 22 N -0.429 5.429 23 C 0.078 3.922 24 C 0.254 3.746 25 N -0.451 5.451 26 C 0.038 3.962 27 C -0.124 4.124 28 C -0.128 4.128 29 C 0.036 3.964 30 N -0.452 5.452 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.183 0.817 41 H 0.209 0.791 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.053 0.947 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -17.735 21.415 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.070 0.930 4 C 0.063 3.937 5 H 0.091 0.909 6 N -0.366 5.366 7 C -0.369 4.369 8 H 0.101 0.899 9 C -0.266 4.266 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.217 1.217 13 H -0.226 1.226 14 H -0.189 1.189 15 C -0.190 4.190 16 C -0.008 4.008 17 N -0.318 5.318 18 C 0.366 3.634 19 O -0.440 6.440 20 C -0.088 4.088 21 C -0.086 4.086 22 N -0.141 5.141 23 C -0.090 4.090 24 C 0.015 3.985 25 N -0.169 5.169 26 C -0.088 4.088 27 C -0.162 4.162 28 C -0.166 4.166 29 C -0.089 4.089 30 N -0.175 5.175 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.200 0.800 41 H 0.226 0.774 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.115 0.885 48 H 0.071 0.929 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.334 -17.736 21.596 28.450 hybrid contribution 0.234 1.374 -1.460 2.018 sum 5.568 -16.362 20.136 26.537 Atomic orbital electron populations 1.21934 0.93804 1.02397 1.02063 1.21801 0.95209 0.95664 0.84824 0.92974 1.21400 0.94936 0.91021 0.86324 0.90899 1.42493 1.79907 1.11831 1.02330 1.19623 1.36413 0.96966 0.83881 0.89877 1.25567 1.02879 0.96050 1.02139 1.69834 1.53474 1.05718 1.33079 0.85146 0.76694 0.77814 0.80130 1.21683 1.22625 1.18931 1.23449 0.99029 1.01316 0.95156 1.22766 0.96171 0.86994 0.94845 1.48421 1.50500 1.28819 1.04027 1.17652 0.80404 0.83844 0.81455 1.90767 1.41622 1.28110 1.83490 1.21663 0.98522 0.94202 0.94394 1.23611 0.97497 0.99971 0.87515 1.68601 1.06376 1.04603 1.34553 1.24182 0.95121 0.93770 0.95935 1.21477 0.96343 0.89561 0.91153 1.61921 1.15653 1.28000 1.11367 1.23368 0.99606 1.00076 0.85749 1.22566 0.94786 0.99894 0.98963 1.22446 0.97149 1.01655 0.95329 1.23217 0.84508 1.01226 0.99927 1.68503 1.09419 1.04280 1.35302 0.91519 0.92548 0.91817 0.79658 0.94103 0.89143 0.92676 0.90378 0.87516 0.80033 0.77431 0.89502 0.92442 0.89717 0.89697 0.90740 0.88498 0.92859 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.11 71.98 0.66 -4.25 16 2 C 0.13 4.72 3.20 45.34 0.15 4.87 16 3 H 0.05 2.20 7.72 -2.39 -0.02 2.18 16 4 C 0.17 6.62 3.13 46.17 0.14 6.76 16 5 H 0.07 2.72 7.80 -2.38 -0.02 2.71 16 6 N -0.73 -35.65 5.23 -317.33 -1.66 -37.31 16 7 C -0.24 -12.62 9.96 84.03 0.84 -11.79 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 10 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 11 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 C -0.15 -4.78 6.77 31.99 0.22 -4.57 16 16 C 0.11 3.11 5.94 86.85 0.52 3.62 16 17 N -0.59 -18.94 3.07 -791.09 -2.43 -21.37 16 18 C 0.58 19.01 7.64 86.87 0.66 19.67 16 19 O -0.56 -21.25 15.39 -3.79 -0.06 -21.30 16 20 C 0.05 1.40 6.71 41.82 0.28 1.68 16 21 C 0.07 1.74 10.76 84.88 0.91 2.65 16 22 N -0.43 -9.01 10.48 -193.60 -2.03 -11.04 16 23 C 0.08 1.26 10.40 85.02 0.88 2.14 16 24 C 0.25 4.68 6.20 133.22 0.83 5.50 16 25 N -0.45 -6.41 5.33 -688.88 -3.67 -10.08 16 26 C 0.04 0.57 5.69 86.65 0.49 1.06 16 27 C -0.12 -1.21 7.06 31.80 0.22 -0.99 16 28 C -0.13 -0.93 6.93 31.47 0.22 -0.72 16 29 C 0.04 0.32 5.90 86.44 0.51 0.83 16 30 N -0.45 -10.51 5.35 -181.79 -0.97 -11.48 16 31 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.06 1.98 6.90 -2.39 -0.02 1.97 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.37 20.15 7.56 -92.71 -0.70 19.45 16 35 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.11 2.70 3.98 -2.39 -0.01 2.70 16 40 H 0.18 4.25 7.63 -2.91 -0.02 4.22 16 41 H 0.21 1.77 7.84 -2.91 -0.02 1.74 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.03 5.81 -2.39 -0.01 1.02 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 48 H 0.05 0.54 7.67 -2.39 -0.02 0.52 16 49 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -68.10 388.29 -0.24 -68.34 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.27 Total: 33.00 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 7.99 Total: 22.80 kcal Atomic # 7 Polarization: -139.43 SS G_CDS: -10.47 Total: -149.90 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.10 -0.24 -68.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987132411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.387 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds