Wall clock time and date at job start Wed Apr 1 2020 03:57:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09001 * 109.99750 * 2 1
4 4 C 1.54335 * 109.78499 * 121.16538 * 2 1 3
5 5 H 1.08996 * 110.66928 * 215.87823 * 4 2 1
6 6 N 1.46503 * 110.84672 * 339.03053 * 4 2 1
7 7 C 1.36930 * 119.99841 * 200.14280 * 6 4 2
8 8 H 1.07997 * 120.00339 * 0.02562 * 7 6 4
9 9 C 1.38814 * 119.99795 * 179.97438 * 7 6 4
10 10 N 1.31624 * 120.00026 * 179.97438 * 9 7 6
11 11 Si 1.86798 * 120.00184 * 0.02562 * 9 7 6
12 12 H 1.48498 * 109.47186 * 89.99639 * 11 9 7
13 13 H 1.48503 * 109.46967 * 209.99565 * 11 9 7
14 14 H 1.48501 * 109.47100 * 329.99716 * 11 9 7
15 15 C 1.55154 * 103.01613 * 97.49637 * 4 2 1
16 16 C 1.54905 * 101.58677 * 35.31254 * 15 4 2
17 17 N 1.47022 * 109.88223 * 238.90941 * 2 1 3
18 18 C 1.34775 * 125.64973 * 59.55460 * 17 2 1
19 19 O 1.21523 * 120.00023 * 359.71759 * 18 17 2
20 20 C 1.48134 * 120.00211 * 179.72020 * 18 17 2
21 21 C 1.39244 * 120.04704 * 180.02562 * 20 18 17
22 22 N 1.32194 * 120.06249 * 180.02562 * 21 20 18
23 23 C 1.31931 * 120.16920 * 359.97438 * 22 21 20
24 24 C 1.39663 * 120.09108 * 0.02562 * 23 22 21
25 25 N 1.38980 * 120.03421 * 179.71972 * 24 23 22
26 26 C 1.48529 * 110.99964 * 177.16220 * 25 24 23
27 27 C 1.54941 * 103.22306 * 159.72330 * 26 25 24
28 28 C 1.54591 * 102.92048 * 322.58665 * 27 26 25
29 29 C 1.47892 * 111.00102 * 294.56327 * 25 24 23
30 30 N 1.32348 * 119.93698 * 359.97438 * 24 23 22
31 31 H 1.09002 * 109.47328 * 179.64142 * 1 2 3
32 32 H 1.09000 * 109.47197 * 299.63606 * 1 2 3
33 33 H 1.09003 * 109.47688 * 59.64080 * 1 2 3
34 34 H 0.96998 * 120.00044 * 20.15041 * 6 4 2
35 35 H 0.96994 * 120.00103 * 179.97438 * 10 9 7
36 36 H 1.09006 * 111.00641 * 277.23360 * 15 4 2
37 37 H 1.09001 * 111.00136 * 153.38995 * 15 4 2
38 38 H 1.08994 * 110.36824 * 204.15178 * 16 15 4
39 39 H 1.08997 * 110.36680 * 81.82168 * 16 15 4
40 40 H 1.08000 * 119.96698 * 0.02562 * 21 20 18
41 41 H 1.07997 * 119.95466 * 180.02562 * 23 22 21
42 42 H 1.08997 * 110.66853 * 278.15929 * 26 25 24
43 43 H 1.08995 * 110.66978 * 41.29022 * 26 25 24
44 44 H 1.09003 * 110.72035 * 204.22702 * 27 26 25
45 45 H 1.09000 * 110.87847 * 81.01617 * 27 26 25
46 46 H 1.09001 * 110.30740 * 263.03928 * 28 27 26
47 47 H 1.09003 * 110.39127 * 140.92176 * 28 27 26
48 48 H 1.09003 * 109.91919 * 333.50504 * 29 25 24
49 49 H 1.09005 * 109.91864 * 94.60237 * 29 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0523 -0.7516 1.2427
5 1 2.9601 -0.2827 1.6224
6 7 1.0258 -0.8101 2.2863
7 6 1.3840 -1.0488 3.5862
8 1 2.4231 -1.1934 3.8422
9 6 0.4114 -1.1038 4.5751
10 7 0.7555 -1.3337 5.8246
11 14 -1.3860 -0.8529 4.1325
12 1 -2.0018 -2.1630 3.8014
13 1 -2.0998 -0.2476 5.2855
14 1 -1.4852 0.0514 2.9588
15 6 2.3562 -2.1696 0.6913
16 6 2.8613 -1.8465 -0.7370
17 7 2.0299 -0.7140 -1.1840
18 6 1.7752 -0.3843 -2.4657
19 8 1.0730 0.5748 -2.7184
20 6 2.3511 -1.1912 -3.5665
21 6 2.0890 -0.8511 -4.8911
22 7 2.6023 -1.5712 -5.8737
23 6 3.3646 -2.6136 -5.6036
24 6 3.6319 -2.9607 -4.2774
25 7 4.4304 -4.0624 -3.9941
26 6 4.6380 -4.2070 -2.5306
27 6 5.0561 -5.6910 -2.3769
28 6 4.1749 -6.4087 -3.4249
29 6 3.7804 -5.3155 -4.4350
30 7 3.1200 -2.2425 -3.2907
31 1 -0.3634 -1.0276 -0.0064
32 1 -0.3633 0.5082 0.8932
33 1 -0.3634 0.5194 -0.8867
34 1 0.0925 -0.6800 2.0564
35 1 0.0760 -1.3717 6.5157
36 1 1.4522 -2.7778 0.6577
37 1 3.1328 -2.6591 1.2789
38 1 2.7178 -2.7047 -1.3934
39 1 3.9123 -1.5587 -0.7116
40 1 1.4657 0.0017 -5.1159
41 1 3.7826 -3.1992 -6.4090
42 1 5.4337 -3.5457 -2.1877
43 1 3.7127 -4.0101 -1.9894
44 1 4.8333 -6.0525 -1.3729
45 1 6.1134 -5.8226 -2.6068
46 1 3.2859 -6.8245 -2.9507
47 1 4.7413 -7.1965 -3.9218
48 1 2.6976 -5.1897 -4.4419
49 1 4.1292 -5.5839 -5.4323
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987132413.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:57:51
Heat of formation + Delta-G solvation = 71.387557 kcal
Electronic energy + Delta-G solvation = -31330.720017 eV
Core-core repulsion = 27294.573063 eV
Total energy + Delta-G solvation = -4036.146954 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.86793 -40.04291 -39.08017 -37.62107 -34.98171 -34.21698 -33.23998 -31.69656
-30.89949 -29.86292 -29.57449 -29.26862 -25.84667 -25.52246 -24.58292 -23.22482
-22.63960 -21.67771 -21.41189 -20.19856 -19.07817 -18.15974 -17.96350 -17.57578
-17.08878 -16.71934 -16.45577 -15.86702 -15.65496 -15.14853 -14.51086 -14.44843
-14.20975 -13.92440 -13.73266 -13.56165 -13.23897 -13.02402 -12.92545 -12.85589
-12.64976 -12.38874 -12.19896 -11.91412 -11.86449 -11.62618 -11.50660 -11.48512
-11.42769 -11.16189 -10.96433 -10.87785 -10.57552 -10.47062 -10.28804 -10.22576
-10.02953 -9.61771 -9.36537 -8.97965 -8.82871 -8.51170 -7.36053 -5.84514
-3.21319 0.09643 0.66014 2.54475 2.77963 3.00939 3.31934 3.34883
3.41017 3.47034 3.69133 3.89350 4.06033 4.17192 4.30962 4.50253
4.52154 4.57787 4.79979 4.84915 4.94224 4.98121 5.02180 5.08206
5.19787 5.22237 5.36155 5.40887 5.46864 5.51531 5.54491 5.57891
5.63470 5.64903 5.71119 5.81219 5.84256 5.95498 6.01949 6.08640
6.17010 6.34977 6.46138 6.48476 6.53902 6.55396 6.80379 6.84298
7.30035 7.53250 7.90448 8.04275 8.34288 9.11608 9.83870 10.02697
11.33401
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.012959 B = 0.003239 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2160.216551 B = 8643.616439 C =10221.577039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.125 3.875
3 H 0.079 0.921
4 C 0.180 3.820
5 H 0.072 0.928
6 N -0.741 5.741
7 C -0.248 4.248
8 H 0.092 0.908
9 C 0.009 3.991
10 N -0.930 5.930
11 Si 0.878 3.122
12 H -0.283 1.283
13 H -0.289 1.289
14 H -0.276 1.276
15 C -0.156 4.156
16 C 0.098 3.902
17 N -0.585 5.585
18 C 0.583 3.417
19 O -0.531 6.531
20 C 0.067 3.933
21 C 0.079 3.921
22 N -0.422 5.422
23 C 0.070 3.930
24 C 0.251 3.749
25 N -0.456 5.456
26 C 0.036 3.964
27 C -0.127 4.127
28 C -0.131 4.131
29 C 0.042 3.958
30 N -0.442 5.442
31 H 0.056 0.944
32 H 0.075 0.925
33 H 0.066 0.934
34 H 0.367 0.633
35 H 0.260 0.740
36 H 0.072 0.928
37 H 0.081 0.919
38 H 0.095 0.905
39 H 0.065 0.935
40 H 0.183 0.817
41 H 0.175 0.825
42 H 0.090 0.910
43 H 0.079 0.921
44 H 0.081 0.919
45 H 0.077 0.923
46 H 0.073 0.927
47 H 0.078 0.922
48 H 0.054 0.946
49 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.049 -8.602 -23.386 26.186
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.022 3.978
3 H 0.097 0.903
4 C 0.069 3.931
5 H 0.090 0.910
6 N -0.386 5.386
7 C -0.377 4.377
8 H 0.110 0.890
9 C -0.187 4.187
10 N -0.578 5.578
11 Si 0.708 3.292
12 H -0.210 1.210
13 H -0.215 1.215
14 H -0.202 1.202
15 C -0.197 4.197
16 C -0.024 4.024
17 N -0.316 5.316
18 C 0.368 3.632
19 O -0.408 6.408
20 C -0.075 4.075
21 C -0.080 4.080
22 N -0.135 5.135
23 C -0.095 4.095
24 C 0.014 3.986
25 N -0.175 5.175
26 C -0.090 4.090
27 C -0.165 4.165
28 C -0.169 4.169
29 C -0.084 4.084
30 N -0.165 5.165
31 H 0.075 0.925
32 H 0.094 0.906
33 H 0.085 0.915
34 H 0.204 0.796
35 H 0.071 0.929
36 H 0.091 0.909
37 H 0.099 0.901
38 H 0.113 0.887
39 H 0.084 0.916
40 H 0.200 0.800
41 H 0.192 0.808
42 H 0.109 0.891
43 H 0.097 0.903
44 H 0.100 0.900
45 H 0.096 0.904
46 H 0.092 0.908
47 H 0.097 0.903
48 H 0.072 0.928
49 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 8.235 -8.008 -23.581 26.230
hybrid contribution -1.800 0.000 0.206 1.812
sum 6.435 -8.008 -23.376 25.533
Atomic orbital electron populations
1.22094 0.94907 1.02386 1.02901 1.21936 0.95163 0.96232 0.84512
0.90288 1.21144 0.92955 0.92478 0.86571 0.90978 1.42966 1.04179
1.86963 1.04492 1.19050 0.95330 1.41425 0.81939 0.89017 1.24644
0.97341 1.01567 0.95163 1.69689 1.32698 1.55695 0.99677 0.86669
0.86904 0.78099 0.77500 1.20988 1.21523 1.20171 1.23571 1.01859
1.00667 0.93579 1.22817 0.94005 0.89196 0.96397 1.48411 1.48555
1.30344 1.04306 1.17259 0.81065 0.83808 0.81072 1.90793 1.38677
1.28249 1.83058 1.22090 0.96481 0.93824 0.95079 1.23653 0.97394
0.99180 0.87769 1.68556 1.06129 1.03792 1.35008 1.23602 0.95647
0.94902 0.95397 1.21182 0.91313 0.94966 0.91136 1.62095 1.37518
1.00726 1.17157 1.23427 1.02801 0.97235 0.85554 1.22553 1.00407
0.93989 0.99556 1.22418 1.00538 0.97474 0.96434 1.22990 0.97511
0.87388 1.00482 1.68692 1.07376 1.05764 1.34662 0.92502 0.90646
0.91482 0.79622 0.92938 0.90948 0.90089 0.88674 0.91636 0.80012
0.80834 0.89117 0.90330 0.90007 0.90433 0.90792 0.90304 0.92786
0.89078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.84 7.93 37.15 0.29 -2.55 16
2 C 0.12 2.09 3.49 -66.95 -0.23 1.85 16
3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
4 C 0.18 3.28 3.45 -66.09 -0.23 3.05 16
5 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16
6 N -0.74 -16.69 4.82 -51.65 -0.25 -16.94 16
7 C -0.25 -6.67 10.46 -15.06 -0.16 -6.83 16
8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16
9 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16
10 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16
11 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16
12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
14 H -0.28 -6.37 6.50 56.52 0.37 -6.00 16
15 C -0.16 -2.44 6.77 -24.59 -0.17 -2.60 16
16 C 0.10 1.31 5.90 -2.53 -0.01 1.30 16
17 N -0.58 -8.84 3.08 -164.01 -0.51 -9.35 16
18 C 0.58 8.89 7.63 -12.20 -0.09 8.80 16
19 O -0.53 -9.19 15.22 5.35 0.08 -9.11 16
20 C 0.07 0.87 6.71 -82.86 -0.56 0.31 16
21 C 0.08 0.93 10.76 -17.02 -0.18 0.74 16
22 N -0.42 -4.62 10.48 -12.54 -0.13 -4.75 16
23 C 0.07 0.65 10.70 -16.98 -0.18 0.47 16
24 C 0.25 2.50 6.01 -154.89 -0.93 1.57 16
25 N -0.46 -3.78 5.29 -169.10 -0.90 -4.68 16
26 C 0.04 0.30 6.01 -1.90 -0.01 0.29 16
27 C -0.13 -0.80 7.06 -24.87 -0.18 -0.97 16
28 C -0.13 -0.71 6.93 -25.38 -0.18 -0.89 16
29 C 0.04 0.26 6.28 -2.76 -0.02 0.25 16
30 N -0.44 -5.18 5.32 -8.81 -0.05 -5.22 16
31 H 0.06 0.98 8.05 -51.93 -0.42 0.57 16
32 H 0.07 1.38 6.71 -51.93 -0.35 1.03 16
33 H 0.07 1.15 6.73 -51.93 -0.35 0.80 16
34 H 0.37 8.22 2.80 -40.82 -0.11 8.11 16
35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
38 H 0.10 1.19 3.82 -51.93 -0.20 0.99 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.18 1.96 7.63 -52.49 -0.40 1.56 16
41 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16
42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
43 H 0.08 0.75 5.13 -51.93 -0.27 0.48 16
44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
47 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16
48 H 0.05 0.38 7.75 -51.93 -0.40 -0.03 16
49 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 380.85 15.07 5.74 5.74
Total: -1.00 -31.67 380.85 -10.04 -41.71
By element:
Atomic # 1 Polarization: 15.62 SS G_CDS: -7.16 Total: 8.46 kcal
Atomic # 6 Polarization: 7.87 SS G_CDS: -2.93 Total: 4.94 kcal
Atomic # 7 Polarization: -67.56 SS G_CDS: -1.05 Total: -68.61 kcal
Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -31.67 -10.04 -41.71 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987132413.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.094 kcal
(2) G-P(sol) polarization free energy of solvation -31.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds