Wall clock time and date at job start Wed Apr 1 2020 03:57:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09001 * 109.99750 * 2 1
4 4 C 1.54335 * 109.78499 * 121.16538 * 2 1 3
5 5 H 1.08996 * 110.66928 * 215.87823 * 4 2 1
6 6 N 1.46503 * 110.84672 * 339.03053 * 4 2 1
7 7 C 1.36930 * 119.99841 * 200.14280 * 6 4 2
8 8 H 1.07997 * 120.00339 * 0.02562 * 7 6 4
9 9 C 1.38814 * 119.99795 * 179.97438 * 7 6 4
10 10 N 1.31624 * 120.00026 * 179.97438 * 9 7 6
11 11 Si 1.86798 * 120.00184 * 0.02562 * 9 7 6
12 12 H 1.48498 * 109.47186 * 89.99639 * 11 9 7
13 13 H 1.48503 * 109.46967 * 209.99565 * 11 9 7
14 14 H 1.48501 * 109.47100 * 329.99716 * 11 9 7
15 15 C 1.55154 * 103.01613 * 97.49637 * 4 2 1
16 16 C 1.54905 * 101.58677 * 35.31254 * 15 4 2
17 17 N 1.47022 * 109.88223 * 238.90941 * 2 1 3
18 18 C 1.34775 * 125.64973 * 59.55460 * 17 2 1
19 19 O 1.21523 * 120.00023 * 359.71759 * 18 17 2
20 20 C 1.48134 * 120.00211 * 179.72020 * 18 17 2
21 21 C 1.39244 * 120.04704 * 180.02562 * 20 18 17
22 22 N 1.32194 * 120.06249 * 180.02562 * 21 20 18
23 23 C 1.31931 * 120.16920 * 359.97438 * 22 21 20
24 24 C 1.39663 * 120.09108 * 0.02562 * 23 22 21
25 25 N 1.38980 * 120.03421 * 179.71972 * 24 23 22
26 26 C 1.48529 * 110.99964 * 177.16220 * 25 24 23
27 27 C 1.54941 * 103.22306 * 159.72330 * 26 25 24
28 28 C 1.54591 * 102.92048 * 322.58665 * 27 26 25
29 29 C 1.47892 * 111.00102 * 294.56327 * 25 24 23
30 30 N 1.32348 * 119.93698 * 359.97438 * 24 23 22
31 31 H 1.09002 * 109.47328 * 179.64142 * 1 2 3
32 32 H 1.09000 * 109.47197 * 299.63606 * 1 2 3
33 33 H 1.09003 * 109.47688 * 59.64080 * 1 2 3
34 34 H 0.96998 * 120.00044 * 20.15041 * 6 4 2
35 35 H 0.96994 * 120.00103 * 179.97438 * 10 9 7
36 36 H 1.09006 * 111.00641 * 277.23360 * 15 4 2
37 37 H 1.09001 * 111.00136 * 153.38995 * 15 4 2
38 38 H 1.08994 * 110.36824 * 204.15178 * 16 15 4
39 39 H 1.08997 * 110.36680 * 81.82168 * 16 15 4
40 40 H 1.08000 * 119.96698 * 0.02562 * 21 20 18
41 41 H 1.07997 * 119.95466 * 180.02562 * 23 22 21
42 42 H 1.08997 * 110.66853 * 278.15929 * 26 25 24
43 43 H 1.08995 * 110.66978 * 41.29022 * 26 25 24
44 44 H 1.09003 * 110.72035 * 204.22702 * 27 26 25
45 45 H 1.09000 * 110.87847 * 81.01617 * 27 26 25
46 46 H 1.09001 * 110.30740 * 263.03928 * 28 27 26
47 47 H 1.09003 * 110.39127 * 140.92176 * 28 27 26
48 48 H 1.09003 * 109.91919 * 333.50504 * 29 25 24
49 49 H 1.09005 * 109.91864 * 94.60237 * 29 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0523 -0.7516 1.2427
5 1 2.9601 -0.2827 1.6224
6 7 1.0258 -0.8101 2.2863
7 6 1.3840 -1.0488 3.5862
8 1 2.4231 -1.1934 3.8422
9 6 0.4114 -1.1038 4.5751
10 7 0.7555 -1.3337 5.8246
11 14 -1.3860 -0.8529 4.1325
12 1 -2.0018 -2.1630 3.8014
13 1 -2.0998 -0.2476 5.2855
14 1 -1.4852 0.0514 2.9588
15 6 2.3562 -2.1696 0.6913
16 6 2.8613 -1.8465 -0.7370
17 7 2.0299 -0.7140 -1.1840
18 6 1.7752 -0.3843 -2.4657
19 8 1.0730 0.5748 -2.7184
20 6 2.3511 -1.1912 -3.5665
21 6 2.0890 -0.8511 -4.8911
22 7 2.6023 -1.5712 -5.8737
23 6 3.3646 -2.6136 -5.6036
24 6 3.6319 -2.9607 -4.2774
25 7 4.4304 -4.0624 -3.9941
26 6 4.6380 -4.2070 -2.5306
27 6 5.0561 -5.6910 -2.3769
28 6 4.1749 -6.4087 -3.4249
29 6 3.7804 -5.3155 -4.4350
30 7 3.1200 -2.2425 -3.2907
31 1 -0.3634 -1.0276 -0.0064
32 1 -0.3633 0.5082 0.8932
33 1 -0.3634 0.5194 -0.8867
34 1 0.0925 -0.6800 2.0564
35 1 0.0760 -1.3717 6.5157
36 1 1.4522 -2.7778 0.6577
37 1 3.1328 -2.6591 1.2789
38 1 2.7178 -2.7047 -1.3934
39 1 3.9123 -1.5587 -0.7116
40 1 1.4657 0.0017 -5.1159
41 1 3.7826 -3.1992 -6.4090
42 1 5.4337 -3.5457 -2.1877
43 1 3.7127 -4.0101 -1.9894
44 1 4.8333 -6.0525 -1.3729
45 1 6.1134 -5.8226 -2.6068
46 1 3.2859 -6.8245 -2.9507
47 1 4.7413 -7.1965 -3.9218
48 1 2.6976 -5.1897 -4.4419
49 1 4.1292 -5.5839 -5.4323
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000987132413.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:57:50
Heat of formation + Delta-G solvation = 50.808244 kcal
Electronic energy + Delta-G solvation = -31331.612403 eV
Core-core repulsion = 27294.573063 eV
Total energy + Delta-G solvation = -4037.039340 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.71583 -41.21976 -39.81447 -38.90652 -36.24245 -35.50243 -34.09457 -33.47218
-32.22439 -31.15856 -30.43646 -30.01522 -27.05497 -26.73133 -25.54903 -24.78578
-23.91180 -22.40978 -22.04803 -21.30558 -20.45689 -19.89425 -19.07632 -18.49959
-17.89140 -17.49166 -17.42194 -16.98767 -16.85307 -16.48702 -16.00616 -15.76467
-15.31495 -15.02438 -14.82088 -14.73344 -14.38828 -14.18461 -13.87808 -13.71442
-13.61692 -13.56115 -13.38475 -13.21501 -13.16713 -12.92257 -12.87259 -12.47634
-12.40110 -12.26818 -12.17746 -12.05521 -11.93701 -11.76655 -11.68189 -11.40893
-11.39494 -11.01963 -10.94593 -10.27002 -9.83513 -9.46210 -9.33237 -8.02950
-5.36729 -0.77685 -0.15942 1.36288 1.37458 1.44445 1.50191 1.63465
2.24111 2.46323 2.56551 2.82388 3.08024 3.26159 3.30753 3.46306
3.52147 3.64163 3.72991 3.81433 3.86353 3.99661 4.05725 4.10013
4.25242 4.28168 4.30689 4.35954 4.45318 4.54444 4.55417 4.64819
4.76712 4.83203 4.89876 4.91598 4.98954 5.01440 5.05773 5.08791
5.17238 5.19080 5.22352 5.24488 5.39199 5.48901 5.76799 5.79272
6.04599 6.20682 6.30193 6.50591 6.85800 7.05738 7.80272 7.99064
9.18095
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.012959 B = 0.003239 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2160.216551 B = 8643.616439 C =10221.577039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.131 3.869
3 H 0.078 0.922
4 C 0.171 3.829
5 H 0.069 0.931
6 N -0.745 5.745
7 C -0.226 4.226
8 H 0.066 0.934
9 C -0.056 4.056
10 N -0.980 5.980
11 Si 0.938 3.062
12 H -0.279 1.279
13 H -0.296 1.296
14 H -0.254 1.254
15 C -0.146 4.146
16 C 0.113 3.887
17 N -0.587 5.587
18 C 0.583 3.417
19 O -0.557 6.557
20 C 0.049 3.951
21 C 0.078 3.922
22 N -0.431 5.431
23 C 0.087 3.913
24 C 0.250 3.750
25 N -0.453 5.453
26 C 0.032 3.968
27 C -0.124 4.124
28 C -0.128 4.128
29 C 0.040 3.960
30 N -0.452 5.452
31 H 0.054 0.946
32 H 0.064 0.936
33 H 0.067 0.933
34 H 0.370 0.630
35 H 0.258 0.742
36 H 0.063 0.937
37 H 0.086 0.914
38 H 0.109 0.891
39 H 0.077 0.923
40 H 0.185 0.815
41 H 0.209 0.791
42 H 0.084 0.916
43 H 0.065 0.935
44 H 0.083 0.917
45 H 0.084 0.916
46 H 0.072 0.928
47 H 0.096 0.904
48 H 0.047 0.953
49 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.559 -10.041 -26.412 29.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.027 3.973
3 H 0.096 0.904
4 C 0.062 3.938
5 H 0.087 0.913
6 N -0.390 5.390
7 C -0.357 4.357
8 H 0.084 0.916
9 C -0.248 4.248
10 N -0.630 5.630
11 Si 0.766 3.234
12 H -0.205 1.205
13 H -0.222 1.222
14 H -0.179 1.179
15 C -0.187 4.187
16 C -0.009 4.009
17 N -0.319 5.319
18 C 0.370 3.630
19 O -0.436 6.436
20 C -0.091 4.091
21 C -0.080 4.080
22 N -0.144 5.144
23 C -0.080 4.080
24 C 0.012 3.988
25 N -0.173 5.173
26 C -0.094 4.094
27 C -0.162 4.162
28 C -0.166 4.166
29 C -0.085 4.085
30 N -0.174 5.174
31 H 0.073 0.927
32 H 0.083 0.917
33 H 0.086 0.914
34 H 0.206 0.794
35 H 0.067 0.933
36 H 0.081 0.919
37 H 0.104 0.896
38 H 0.127 0.873
39 H 0.095 0.905
40 H 0.202 0.798
41 H 0.225 0.775
42 H 0.102 0.898
43 H 0.083 0.917
44 H 0.101 0.899
45 H 0.102 0.898
46 H 0.091 0.909
47 H 0.114 0.886
48 H 0.066 0.934
49 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 8.756 -9.437 -26.668 29.613
hybrid contribution -1.772 0.364 1.030 2.081
sum 6.984 -9.073 -25.638 28.078
Atomic orbital electron populations
1.22000 0.95137 1.02061 1.02353 1.21720 0.94908 0.96138 0.84562
0.90377 1.21313 0.91823 0.94401 0.86275 0.91294 1.42941 1.05227
1.87042 1.03795 1.19024 0.94079 1.38906 0.83716 0.91618 1.25351
1.01692 1.02709 0.95079 1.69850 1.33931 1.58329 1.00894 0.85677
0.81600 0.78466 0.77634 1.20485 1.22228 1.17866 1.23404 1.01721
0.98542 0.94992 1.22790 0.94133 0.89175 0.94828 1.48413 1.48839
1.30572 1.04029 1.17594 0.80514 0.83620 0.81309 1.90769 1.39858
1.29456 1.83477 1.21695 0.98195 0.94801 0.94457 1.23675 0.97400
0.99390 0.87493 1.68637 1.06771 1.04427 1.34567 1.24166 0.93876
0.93942 0.96016 1.21471 0.90941 0.95178 0.91213 1.62181 1.36937
1.01017 1.17116 1.23421 1.01938 0.98567 0.85479 1.22545 1.00968
0.92602 1.00061 1.22435 1.00546 0.97542 0.96039 1.23139 0.97109
0.86445 1.01848 1.68566 1.07551 1.05704 1.35613 0.92677 0.91677
0.91383 0.79371 0.93346 0.91862 0.89592 0.87337 0.90458 0.79822
0.77481 0.89751 0.91681 0.89872 0.89773 0.90902 0.88590 0.93430
0.86782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.32 7.93 71.98 0.57 -4.75 16
2 C 0.13 4.29 3.49 45.34 0.16 4.45 16
3 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16
4 C 0.17 6.18 3.45 46.18 0.16 6.34 16
5 H 0.07 2.54 8.12 -2.39 -0.02 2.53 16
6 N -0.74 -33.33 4.82 -317.32 -1.53 -34.86 16
7 C -0.23 -12.35 10.46 84.03 0.88 -11.47 16
8 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16
9 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16
10 N -0.98 -61.45 13.97 21.65 0.30 -61.15 16
11 Si 0.94 44.78 27.74 68.60 1.90 46.68 16
12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
13 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16
14 H -0.25 -11.05 6.50 99.48 0.65 -10.40 16
15 C -0.15 -4.45 6.77 31.98 0.22 -4.23 16
16 C 0.11 2.86 5.90 86.85 0.51 3.38 16
17 N -0.59 -17.26 3.08 -791.10 -2.44 -19.70 16
18 C 0.58 17.39 7.63 86.87 0.66 18.05 16
19 O -0.56 -19.13 15.22 -3.79 -0.06 -19.19 16
20 C 0.05 1.20 6.71 41.82 0.28 1.48 16
21 C 0.08 1.74 10.76 84.88 0.91 2.65 16
22 N -0.43 -8.47 10.48 -193.60 -2.03 -10.50 16
23 C 0.09 1.33 10.70 85.02 0.91 2.24 16
24 C 0.25 4.36 6.01 133.22 0.80 5.16 16
25 N -0.45 -6.24 5.29 -688.92 -3.65 -9.89 16
26 C 0.03 0.47 6.01 86.65 0.52 0.99 16
27 C -0.12 -1.26 7.06 31.80 0.22 -1.03 16
28 C -0.13 -1.01 6.93 31.47 0.22 -0.79 16
29 C 0.04 0.36 6.28 86.45 0.54 0.91 16
30 N -0.45 -9.80 5.32 -181.79 -0.97 -10.76 16
31 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16
32 H 0.06 2.32 6.71 -2.39 -0.02 2.30 16
33 H 0.07 2.28 6.73 -2.39 -0.02 2.27 16
34 H 0.37 16.21 2.80 -92.71 -0.26 15.95 16
35 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16
36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16
37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
38 H 0.11 2.55 3.82 -2.39 -0.01 2.55 16
39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
40 H 0.18 3.87 7.63 -2.91 -0.02 3.85 16
41 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16
42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
43 H 0.07 1.13 5.13 -2.39 -0.01 1.12 16
44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
47 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
48 H 0.05 0.52 7.75 -2.39 -0.02 0.50 16
49 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16
Total: -1.00 -68.88 380.85 0.23 -68.65
By element:
Atomic # 1 Polarization: 29.46 SS G_CDS: 0.66 Total: 30.11 kcal
Atomic # 6 Polarization: 12.57 SS G_CDS: 8.04 Total: 20.61 kcal
Atomic # 7 Polarization: -136.56 SS G_CDS: -10.31 Total: -146.86 kcal
Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal
Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal
Total: -68.88 0.23 -68.65 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987132413.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.461 kcal
(2) G-P(sol) polarization free energy of solvation -68.884 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.577 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds