Wall clock time and date at job start Wed Apr 1 2020 03:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.99750 * 2 1 4 4 C 1.54335 * 109.78499 * 121.16538 * 2 1 3 5 5 H 1.08996 * 110.66928 * 215.87823 * 4 2 1 6 6 N 1.46503 * 110.84672 * 339.03053 * 4 2 1 7 7 C 1.36930 * 119.99841 * 200.14280 * 6 4 2 8 8 H 1.07997 * 120.00339 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99795 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00026 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00184 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47186 * 89.99639 * 11 9 7 13 13 H 1.48503 * 109.46967 * 209.99565 * 11 9 7 14 14 H 1.48501 * 109.47100 * 329.99716 * 11 9 7 15 15 C 1.55154 * 103.01613 * 97.49637 * 4 2 1 16 16 C 1.54905 * 101.58677 * 35.31254 * 15 4 2 17 17 N 1.47022 * 109.88223 * 238.90941 * 2 1 3 18 18 C 1.34775 * 125.64973 * 59.55460 * 17 2 1 19 19 O 1.21523 * 120.00023 * 359.71759 * 18 17 2 20 20 C 1.48134 * 120.00211 * 179.72020 * 18 17 2 21 21 C 1.39244 * 120.04704 * 180.02562 * 20 18 17 22 22 N 1.32194 * 120.06249 * 180.02562 * 21 20 18 23 23 C 1.31931 * 120.16920 * 359.97438 * 22 21 20 24 24 C 1.39663 * 120.09108 * 0.02562 * 23 22 21 25 25 N 1.38980 * 120.03421 * 179.71972 * 24 23 22 26 26 C 1.48529 * 110.99964 * 177.16220 * 25 24 23 27 27 C 1.54941 * 103.22306 * 159.72330 * 26 25 24 28 28 C 1.54591 * 102.92048 * 322.58665 * 27 26 25 29 29 C 1.47892 * 111.00102 * 294.56327 * 25 24 23 30 30 N 1.32348 * 119.93698 * 359.97438 * 24 23 22 31 31 H 1.09002 * 109.47328 * 179.64142 * 1 2 3 32 32 H 1.09000 * 109.47197 * 299.63606 * 1 2 3 33 33 H 1.09003 * 109.47688 * 59.64080 * 1 2 3 34 34 H 0.96998 * 120.00044 * 20.15041 * 6 4 2 35 35 H 0.96994 * 120.00103 * 179.97438 * 10 9 7 36 36 H 1.09006 * 111.00641 * 277.23360 * 15 4 2 37 37 H 1.09001 * 111.00136 * 153.38995 * 15 4 2 38 38 H 1.08994 * 110.36824 * 204.15178 * 16 15 4 39 39 H 1.08997 * 110.36680 * 81.82168 * 16 15 4 40 40 H 1.08000 * 119.96698 * 0.02562 * 21 20 18 41 41 H 1.07997 * 119.95466 * 180.02562 * 23 22 21 42 42 H 1.08997 * 110.66853 * 278.15929 * 26 25 24 43 43 H 1.08995 * 110.66978 * 41.29022 * 26 25 24 44 44 H 1.09003 * 110.72035 * 204.22702 * 27 26 25 45 45 H 1.09000 * 110.87847 * 81.01617 * 27 26 25 46 46 H 1.09001 * 110.30740 * 263.03928 * 28 27 26 47 47 H 1.09003 * 110.39127 * 140.92176 * 28 27 26 48 48 H 1.09003 * 109.91919 * 333.50504 * 29 25 24 49 49 H 1.09005 * 109.91864 * 94.60237 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9601 -0.2827 1.6224 6 7 1.0258 -0.8101 2.2863 7 6 1.3840 -1.0488 3.5862 8 1 2.4231 -1.1934 3.8422 9 6 0.4114 -1.1038 4.5751 10 7 0.7555 -1.3337 5.8246 11 14 -1.3860 -0.8529 4.1325 12 1 -2.0018 -2.1630 3.8014 13 1 -2.0998 -0.2476 5.2855 14 1 -1.4852 0.0514 2.9588 15 6 2.3562 -2.1696 0.6913 16 6 2.8613 -1.8465 -0.7370 17 7 2.0299 -0.7140 -1.1840 18 6 1.7752 -0.3843 -2.4657 19 8 1.0730 0.5748 -2.7184 20 6 2.3511 -1.1912 -3.5665 21 6 2.0890 -0.8511 -4.8911 22 7 2.6023 -1.5712 -5.8737 23 6 3.3646 -2.6136 -5.6036 24 6 3.6319 -2.9607 -4.2774 25 7 4.4304 -4.0624 -3.9941 26 6 4.6380 -4.2070 -2.5306 27 6 5.0561 -5.6910 -2.3769 28 6 4.1749 -6.4087 -3.4249 29 6 3.7804 -5.3155 -4.4350 30 7 3.1200 -2.2425 -3.2907 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3633 0.5082 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 0.0925 -0.6800 2.0564 35 1 0.0760 -1.3717 6.5157 36 1 1.4522 -2.7778 0.6577 37 1 3.1328 -2.6591 1.2789 38 1 2.7178 -2.7047 -1.3934 39 1 3.9123 -1.5587 -0.7116 40 1 1.4657 0.0017 -5.1159 41 1 3.7826 -3.1992 -6.4090 42 1 5.4337 -3.5457 -2.1877 43 1 3.7127 -4.0101 -1.9894 44 1 4.8333 -6.0525 -1.3729 45 1 6.1134 -5.8226 -2.6068 46 1 3.2859 -6.8245 -2.9507 47 1 4.7413 -7.1965 -3.9218 48 1 2.6976 -5.1897 -4.4419 49 1 4.1292 -5.5839 -5.4323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987132413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:50 Heat of formation + Delta-G solvation = 50.808244 kcal Electronic energy + Delta-G solvation = -31331.612403 eV Core-core repulsion = 27294.573063 eV Total energy + Delta-G solvation = -4037.039340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.71583 -41.21976 -39.81447 -38.90652 -36.24245 -35.50243 -34.09457 -33.47218 -32.22439 -31.15856 -30.43646 -30.01522 -27.05497 -26.73133 -25.54903 -24.78578 -23.91180 -22.40978 -22.04803 -21.30558 -20.45689 -19.89425 -19.07632 -18.49959 -17.89140 -17.49166 -17.42194 -16.98767 -16.85307 -16.48702 -16.00616 -15.76467 -15.31495 -15.02438 -14.82088 -14.73344 -14.38828 -14.18461 -13.87808 -13.71442 -13.61692 -13.56115 -13.38475 -13.21501 -13.16713 -12.92257 -12.87259 -12.47634 -12.40110 -12.26818 -12.17746 -12.05521 -11.93701 -11.76655 -11.68189 -11.40893 -11.39494 -11.01963 -10.94593 -10.27002 -9.83513 -9.46210 -9.33237 -8.02950 -5.36729 -0.77685 -0.15942 1.36288 1.37458 1.44445 1.50191 1.63465 2.24111 2.46323 2.56551 2.82388 3.08024 3.26159 3.30753 3.46306 3.52147 3.64163 3.72991 3.81433 3.86353 3.99661 4.05725 4.10013 4.25242 4.28168 4.30689 4.35954 4.45318 4.54444 4.55417 4.64819 4.76712 4.83203 4.89876 4.91598 4.98954 5.01440 5.05773 5.08791 5.17238 5.19080 5.22352 5.24488 5.39199 5.48901 5.76799 5.79272 6.04599 6.20682 6.30193 6.50591 6.85800 7.05738 7.80272 7.99064 9.18095 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.003239 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.216551 B = 8643.616439 C =10221.577039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.131 3.869 3 H 0.078 0.922 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.745 5.745 7 C -0.226 4.226 8 H 0.066 0.934 9 C -0.056 4.056 10 N -0.980 5.980 11 Si 0.938 3.062 12 H -0.279 1.279 13 H -0.296 1.296 14 H -0.254 1.254 15 C -0.146 4.146 16 C 0.113 3.887 17 N -0.587 5.587 18 C 0.583 3.417 19 O -0.557 6.557 20 C 0.049 3.951 21 C 0.078 3.922 22 N -0.431 5.431 23 C 0.087 3.913 24 C 0.250 3.750 25 N -0.453 5.453 26 C 0.032 3.968 27 C -0.124 4.124 28 C -0.128 4.128 29 C 0.040 3.960 30 N -0.452 5.452 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.370 0.630 35 H 0.258 0.742 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.185 0.815 41 H 0.209 0.791 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.096 0.904 48 H 0.047 0.953 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -10.041 -26.412 29.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.096 0.904 4 C 0.062 3.938 5 H 0.087 0.913 6 N -0.390 5.390 7 C -0.357 4.357 8 H 0.084 0.916 9 C -0.248 4.248 10 N -0.630 5.630 11 Si 0.766 3.234 12 H -0.205 1.205 13 H -0.222 1.222 14 H -0.179 1.179 15 C -0.187 4.187 16 C -0.009 4.009 17 N -0.319 5.319 18 C 0.370 3.630 19 O -0.436 6.436 20 C -0.091 4.091 21 C -0.080 4.080 22 N -0.144 5.144 23 C -0.080 4.080 24 C 0.012 3.988 25 N -0.173 5.173 26 C -0.094 4.094 27 C -0.162 4.162 28 C -0.166 4.166 29 C -0.085 4.085 30 N -0.174 5.174 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.202 0.798 41 H 0.225 0.775 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.066 0.934 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.756 -9.437 -26.668 29.613 hybrid contribution -1.772 0.364 1.030 2.081 sum 6.984 -9.073 -25.638 28.078 Atomic orbital electron populations 1.22000 0.95137 1.02061 1.02353 1.21720 0.94908 0.96138 0.84562 0.90377 1.21313 0.91823 0.94401 0.86275 0.91294 1.42941 1.05227 1.87042 1.03795 1.19024 0.94079 1.38906 0.83716 0.91618 1.25351 1.01692 1.02709 0.95079 1.69850 1.33931 1.58329 1.00894 0.85677 0.81600 0.78466 0.77634 1.20485 1.22228 1.17866 1.23404 1.01721 0.98542 0.94992 1.22790 0.94133 0.89175 0.94828 1.48413 1.48839 1.30572 1.04029 1.17594 0.80514 0.83620 0.81309 1.90769 1.39858 1.29456 1.83477 1.21695 0.98195 0.94801 0.94457 1.23675 0.97400 0.99390 0.87493 1.68637 1.06771 1.04427 1.34567 1.24166 0.93876 0.93942 0.96016 1.21471 0.90941 0.95178 0.91213 1.62181 1.36937 1.01017 1.17116 1.23421 1.01938 0.98567 0.85479 1.22545 1.00968 0.92602 1.00061 1.22435 1.00546 0.97542 0.96039 1.23139 0.97109 0.86445 1.01848 1.68566 1.07551 1.05704 1.35613 0.92677 0.91677 0.91383 0.79371 0.93346 0.91862 0.89592 0.87337 0.90458 0.79822 0.77481 0.89751 0.91681 0.89872 0.89773 0.90902 0.88590 0.93430 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 7.93 71.98 0.57 -4.75 16 2 C 0.13 4.29 3.49 45.34 0.16 4.45 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16 4 C 0.17 6.18 3.45 46.18 0.16 6.34 16 5 H 0.07 2.54 8.12 -2.39 -0.02 2.53 16 6 N -0.74 -33.33 4.82 -317.32 -1.53 -34.86 16 7 C -0.23 -12.35 10.46 84.03 0.88 -11.47 16 8 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 9 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 10 N -0.98 -61.45 13.97 21.65 0.30 -61.15 16 11 Si 0.94 44.78 27.74 68.60 1.90 46.68 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 14 H -0.25 -11.05 6.50 99.48 0.65 -10.40 16 15 C -0.15 -4.45 6.77 31.98 0.22 -4.23 16 16 C 0.11 2.86 5.90 86.85 0.51 3.38 16 17 N -0.59 -17.26 3.08 -791.10 -2.44 -19.70 16 18 C 0.58 17.39 7.63 86.87 0.66 18.05 16 19 O -0.56 -19.13 15.22 -3.79 -0.06 -19.19 16 20 C 0.05 1.20 6.71 41.82 0.28 1.48 16 21 C 0.08 1.74 10.76 84.88 0.91 2.65 16 22 N -0.43 -8.47 10.48 -193.60 -2.03 -10.50 16 23 C 0.09 1.33 10.70 85.02 0.91 2.24 16 24 C 0.25 4.36 6.01 133.22 0.80 5.16 16 25 N -0.45 -6.24 5.29 -688.92 -3.65 -9.89 16 26 C 0.03 0.47 6.01 86.65 0.52 0.99 16 27 C -0.12 -1.26 7.06 31.80 0.22 -1.03 16 28 C -0.13 -1.01 6.93 31.47 0.22 -0.79 16 29 C 0.04 0.36 6.28 86.45 0.54 0.91 16 30 N -0.45 -9.80 5.32 -181.79 -0.97 -10.76 16 31 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 32 H 0.06 2.32 6.71 -2.39 -0.02 2.30 16 33 H 0.07 2.28 6.73 -2.39 -0.02 2.27 16 34 H 0.37 16.21 2.80 -92.71 -0.26 15.95 16 35 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.11 2.55 3.82 -2.39 -0.01 2.55 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.18 3.87 7.63 -2.91 -0.02 3.85 16 41 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.13 5.13 -2.39 -0.01 1.12 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.05 0.52 7.75 -2.39 -0.02 0.50 16 49 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -68.88 380.85 0.23 -68.65 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.66 Total: 30.11 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 8.04 Total: 20.61 kcal Atomic # 7 Polarization: -136.56 SS G_CDS: -10.31 Total: -146.86 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -68.88 0.23 -68.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987132413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.461 kcal (2) G-P(sol) polarization free energy of solvation -68.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds