Wall clock time and date at job start Wed Apr 1 2020 03:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.87449 * 2 1 4 4 C 1.54323 * 109.88214 * 121.01345 * 2 1 3 5 5 H 1.09002 * 110.72057 * 23.40260 * 4 2 1 6 6 N 1.46505 * 110.71829 * 260.30669 * 4 2 1 7 7 C 1.36938 * 119.99525 * 157.44073 * 6 4 2 8 8 H 1.08006 * 120.00198 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99618 * 179.97438 * 7 6 4 10 10 N 1.31611 * 120.00172 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99664 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47217 * 90.00217 * 11 9 7 13 13 H 1.48504 * 109.47046 * 209.99779 * 11 9 7 14 14 H 1.48500 * 109.47375 * 330.00151 * 11 9 7 15 15 C 1.55153 * 103.10236 * 141.85508 * 4 2 1 16 16 C 1.55386 * 101.36753 * 324.50743 * 15 4 2 17 17 N 1.47021 * 110.01293 * 238.89988 * 2 1 3 18 18 C 1.34778 * 125.64615 * 61.60835 * 17 2 1 19 19 O 1.21552 * 120.00407 * 359.97438 * 18 17 2 20 20 C 1.47860 * 120.00036 * 180.02562 * 18 17 2 21 21 C 1.40068 * 120.09680 * 179.72356 * 20 18 17 22 22 C 1.38291 * 117.98994 * 179.73536 * 21 20 18 23 23 C 1.39599 * 118.02884 * 0.52214 * 22 21 20 24 24 N 1.38512 * 120.04982 * 179.70229 * 23 22 21 25 25 C 1.48536 * 110.99467 * 62.62964 * 24 23 22 26 26 C 1.54942 * 103.22682 * 159.72026 * 25 24 23 27 27 C 1.54601 * 102.92013 * 322.58942 * 26 25 24 28 28 C 1.47900 * 111.00125 * 180.02562 * 24 23 22 29 29 N 1.32858 * 119.90527 * 359.73375 * 23 22 21 30 30 N 1.28353 * 122.15939 * 359.97438 * 29 23 22 31 31 H 1.08994 * 109.47034 * 298.98522 * 1 2 3 32 32 H 1.09002 * 109.46825 * 58.98459 * 1 2 3 33 33 H 1.09000 * 109.47200 * 178.98233 * 1 2 3 34 34 H 0.96996 * 120.00388 * 337.43652 * 6 4 2 35 35 H 0.97004 * 120.00220 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00505 * 82.48412 * 15 4 2 37 37 H 1.09001 * 111.00757 * 206.33495 * 15 4 2 38 38 H 1.08998 * 110.34947 * 278.13041 * 16 15 4 39 39 H 1.08998 * 110.44218 * 155.87708 * 16 15 4 40 40 H 1.07992 * 121.00182 * 359.97438 * 21 20 18 41 41 H 1.08005 * 120.98369 * 180.23461 * 22 21 20 42 42 H 1.08996 * 110.67105 * 278.15678 * 25 24 23 43 43 H 1.09000 * 110.67110 * 41.28861 * 25 24 23 44 44 H 1.08990 * 110.72525 * 204.22721 * 26 25 24 45 45 H 1.09007 * 110.71938 * 80.94360 * 26 25 24 46 46 H 1.09000 * 110.30189 * 263.03851 * 27 26 25 47 47 H 1.08991 * 110.30812 * 140.87179 * 27 26 25 48 48 H 1.08999 * 109.91967 * 333.51319 * 28 24 23 49 49 H 1.09001 * 109.91142 * 94.80664 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 1 1.3061 -1.4456 1.6187 6 7 2.4481 0.1992 2.2902 7 6 2.4971 -0.2063 3.5972 8 1 2.2463 -1.2244 3.8566 9 6 2.8702 0.6907 4.5887 10 7 3.1764 1.9311 4.2726 11 14 2.9378 0.1373 6.3715 12 1 4.2949 -0.3822 6.6775 13 1 2.6372 1.2893 7.2591 14 1 1.9352 -0.9350 6.5954 15 6 3.2921 -1.5098 0.7000 16 6 2.8197 -1.8769 -0.7341 17 7 2.0332 -0.7136 -1.1829 18 6 1.8127 -0.3618 -2.4651 19 8 1.1460 0.6222 -2.7194 20 6 2.3807 -1.1736 -3.5626 21 6 2.1480 -0.8132 -4.8960 22 6 2.7047 -1.6001 -5.8876 23 6 3.4550 -2.7114 -5.4994 24 7 4.0264 -3.5318 -6.4581 25 6 5.0204 -2.7866 -7.2722 26 6 5.8957 -3.9115 -7.8800 27 6 5.9863 -4.9392 -6.7285 28 6 4.7724 -4.6429 -5.8285 29 7 3.6198 -2.9814 -4.2090 30 7 3.1087 -2.2491 -3.2871 31 1 -0.3633 0.4980 0.8989 32 1 -0.3633 0.5295 -0.8808 33 1 -0.3633 -1.0275 -0.0183 34 1 2.6738 1.1133 2.0573 35 1 3.4367 2.5581 4.9655 36 1 4.1679 -0.8616 0.6692 37 1 3.4907 -2.4043 1.2904 38 1 2.1957 -2.7703 -0.7106 39 1 3.6769 -2.0309 -1.3896 40 1 1.5550 0.0551 -5.1421 41 1 2.5593 -1.3645 -6.9316 42 1 4.5247 -2.2176 -8.0586 43 1 5.6204 -2.1308 -6.6414 44 1 6.8847 -3.5336 -8.1384 45 1 5.4094 -4.3503 -8.7513 46 1 6.9130 -4.8021 -6.1713 47 1 5.9270 -5.9540 -7.1217 48 1 5.1101 -4.3476 -4.8350 49 1 4.1364 -5.5255 -5.7603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987330065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:43 Heat of formation + Delta-G solvation = 68.165441 kcal Electronic energy + Delta-G solvation = -30179.097351 eV Core-core repulsion = 26142.810676 eV Total energy + Delta-G solvation = -4036.286675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70400 -40.00944 -38.98379 -37.40809 -34.31058 -33.83862 -33.40711 -31.71575 -30.86913 -30.14219 -29.55926 -28.88754 -25.44881 -25.10530 -24.78932 -23.06471 -22.67107 -21.85078 -21.30841 -20.39443 -19.51747 -18.00009 -17.94998 -17.18125 -16.98053 -16.43707 -16.12592 -15.52508 -15.16564 -14.76878 -14.68973 -14.37066 -14.21158 -13.85172 -13.61015 -13.54106 -13.30152 -13.14683 -12.98806 -12.76006 -12.70729 -12.15617 -12.06347 -11.86954 -11.82580 -11.69795 -11.37095 -11.12460 -11.03418 -11.00315 -10.86791 -10.78967 -10.55263 -10.50299 -10.22968 -10.04471 -9.86075 -9.84654 -9.67843 -8.93642 -8.89160 -8.38243 -7.00335 -5.79504 -3.09568 0.22036 0.48181 2.51955 2.89137 3.05988 3.42833 3.48032 3.48278 3.49778 3.72835 3.96833 4.07474 4.26580 4.34456 4.40826 4.56807 4.57674 4.64865 4.76795 4.89988 5.05521 5.14848 5.16934 5.21129 5.28729 5.36119 5.41929 5.44252 5.45640 5.52820 5.64196 5.66734 5.70295 5.72825 5.78835 5.90119 6.07667 6.11304 6.12614 6.25211 6.40598 6.44533 6.49773 6.63381 6.68028 6.72556 6.97921 7.67261 7.68935 8.10811 8.33813 8.37982 9.49389 10.04012 10.38965 11.42755 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.002218 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.463784 B =12618.844498 C =13605.849572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.080 0.920 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.715 5.715 7 C -0.241 4.241 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.098 3.902 17 N -0.584 5.584 18 C 0.585 3.415 19 O -0.537 6.537 20 C 0.012 3.988 21 C -0.045 4.045 22 C -0.133 4.133 23 C 0.257 3.743 24 N -0.456 5.456 25 C 0.041 3.959 26 C -0.123 4.123 27 C -0.133 4.133 28 C 0.031 3.969 29 N -0.282 5.282 30 N -0.179 5.179 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -11.829 -27.016 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.098 0.902 4 C 0.064 3.936 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.372 4.372 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.025 4.025 17 N -0.315 5.315 18 C 0.370 3.630 19 O -0.414 6.414 20 C -0.137 4.137 21 C -0.075 4.075 22 C -0.164 4.164 23 C 0.020 3.980 24 N -0.175 5.175 25 C -0.085 4.085 26 C -0.161 4.161 27 C -0.171 4.171 28 C -0.096 4.096 29 N -0.130 5.130 30 N -0.025 5.025 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.068 -12.544 -26.217 29.225 hybrid contribution 0.040 1.093 0.241 1.120 sum 3.108 -11.451 -25.976 28.558 Atomic orbital electron populations 1.22049 0.94660 1.01726 1.02821 1.22026 0.94572 0.96991 0.84228 0.90152 1.21264 0.93793 0.91578 0.86954 0.91535 1.42347 1.80546 1.10249 1.02371 1.19212 1.38888 0.95870 0.83247 0.90962 1.24764 1.02143 0.95750 0.98118 1.69664 1.52161 1.03644 1.32368 0.86176 0.77698 0.77291 0.84913 1.21692 1.21795 1.20696 1.23686 1.01047 1.01658 0.93431 1.22807 0.95802 0.87224 0.96657 1.48401 1.50180 1.28607 1.04335 1.17053 0.80956 0.83943 0.81087 1.90788 1.40596 1.26939 1.83070 1.22786 1.00141 0.96077 0.94687 1.22311 0.94977 0.99069 0.91098 1.21914 0.97963 0.94663 1.01835 1.21679 0.94310 0.90745 0.91307 1.61705 1.29778 1.08186 1.17812 1.23400 0.92011 0.96383 0.96661 1.22520 0.99819 0.95300 0.98489 1.22461 0.98034 1.00169 0.96461 1.23000 0.94460 0.93535 0.98587 1.73345 1.17753 1.24053 0.97852 1.73371 1.03231 1.00908 1.25028 0.90888 0.91990 0.93007 0.78020 0.93417 0.90801 0.90473 0.91628 0.88652 0.81786 0.82585 0.88822 0.92263 0.90146 0.90167 0.90823 0.90427 0.89599 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.10 37.16 0.34 -2.29 16 2 C 0.13 2.28 3.20 -66.95 -0.21 2.07 16 3 H 0.08 1.62 7.70 -51.93 -0.40 1.22 16 4 C 0.18 3.46 3.11 -66.10 -0.21 3.25 16 5 H 0.07 1.31 7.82 -51.93 -0.41 0.90 16 6 N -0.71 -17.53 5.24 -51.65 -0.27 -17.80 16 7 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 11 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.16 -2.74 6.80 -24.33 -0.17 -2.90 16 16 C 0.10 1.50 5.97 -2.27 -0.01 1.49 16 17 N -0.58 -9.74 3.07 -163.81 -0.50 -10.24 16 18 C 0.58 9.61 7.63 -12.32 -0.09 9.52 16 19 O -0.54 -9.86 15.44 5.32 0.08 -9.78 16 20 C 0.01 0.16 6.80 -82.84 -0.56 -0.40 16 21 C -0.05 -0.49 9.71 -38.88 -0.38 -0.86 16 22 C -0.13 -1.17 9.57 -39.05 -0.37 -1.54 16 23 C 0.26 2.64 6.27 -154.93 -0.97 1.67 16 24 N -0.46 -3.76 5.29 -169.11 -0.89 -4.66 16 25 C 0.04 0.24 6.06 -1.89 -0.01 0.22 16 26 C -0.12 -0.54 7.06 -24.87 -0.18 -0.72 16 27 C -0.13 -0.70 6.93 -25.37 -0.18 -0.88 16 28 C 0.03 0.24 6.35 -2.75 -0.02 0.22 16 29 N -0.28 -3.55 9.32 31.21 0.29 -3.26 16 30 N -0.18 -2.50 7.79 33.32 0.26 -2.24 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.07 6.91 -51.93 -0.36 0.71 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.39 10.17 7.53 -40.82 -0.31 9.87 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.43 5.89 -51.93 -0.31 1.12 16 40 H 0.16 1.52 7.71 -52.49 -0.40 1.12 16 41 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.38 7.99 -51.93 -0.42 -0.03 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.81 6.50 -51.93 -0.34 0.47 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 391.94 15.07 5.91 5.91 Total: -1.00 -31.93 391.94 -10.25 -42.18 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.55 Total: 8.13 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -3.27 Total: 1.77 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -0.39 Total: -65.29 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.93 -10.25 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987330065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.343 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds