Wall clock time and date at job start Wed Apr 1 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.87449 * 2 1 4 4 C 1.54323 * 109.88214 * 121.01345 * 2 1 3 5 5 H 1.09002 * 110.72057 * 23.40260 * 4 2 1 6 6 N 1.46505 * 110.71829 * 260.30669 * 4 2 1 7 7 C 1.36938 * 119.99525 * 157.44073 * 6 4 2 8 8 H 1.08006 * 120.00198 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99618 * 179.97438 * 7 6 4 10 10 N 1.31611 * 120.00172 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99664 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47217 * 90.00217 * 11 9 7 13 13 H 1.48504 * 109.47046 * 209.99779 * 11 9 7 14 14 H 1.48500 * 109.47375 * 330.00151 * 11 9 7 15 15 C 1.55153 * 103.10236 * 141.85508 * 4 2 1 16 16 C 1.55386 * 101.36753 * 324.50743 * 15 4 2 17 17 N 1.47021 * 110.01293 * 238.89988 * 2 1 3 18 18 C 1.34778 * 125.64615 * 61.60835 * 17 2 1 19 19 O 1.21552 * 120.00407 * 359.97438 * 18 17 2 20 20 C 1.47860 * 120.00036 * 180.02562 * 18 17 2 21 21 C 1.40068 * 120.09680 * 179.72356 * 20 18 17 22 22 C 1.38291 * 117.98994 * 179.73536 * 21 20 18 23 23 C 1.39599 * 118.02884 * 0.52214 * 22 21 20 24 24 N 1.38512 * 120.04982 * 179.70229 * 23 22 21 25 25 C 1.48536 * 110.99467 * 62.62964 * 24 23 22 26 26 C 1.54942 * 103.22682 * 159.72026 * 25 24 23 27 27 C 1.54601 * 102.92013 * 322.58942 * 26 25 24 28 28 C 1.47900 * 111.00125 * 180.02562 * 24 23 22 29 29 N 1.32858 * 119.90527 * 359.73375 * 23 22 21 30 30 N 1.28353 * 122.15939 * 359.97438 * 29 23 22 31 31 H 1.08994 * 109.47034 * 298.98522 * 1 2 3 32 32 H 1.09002 * 109.46825 * 58.98459 * 1 2 3 33 33 H 1.09000 * 109.47200 * 178.98233 * 1 2 3 34 34 H 0.96996 * 120.00388 * 337.43652 * 6 4 2 35 35 H 0.97004 * 120.00220 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00505 * 82.48412 * 15 4 2 37 37 H 1.09001 * 111.00757 * 206.33495 * 15 4 2 38 38 H 1.08998 * 110.34947 * 278.13041 * 16 15 4 39 39 H 1.08998 * 110.44218 * 155.87708 * 16 15 4 40 40 H 1.07992 * 121.00182 * 359.97438 * 21 20 18 41 41 H 1.08005 * 120.98369 * 180.23461 * 22 21 20 42 42 H 1.08996 * 110.67105 * 278.15678 * 25 24 23 43 43 H 1.09000 * 110.67110 * 41.28861 * 25 24 23 44 44 H 1.08990 * 110.72525 * 204.22721 * 26 25 24 45 45 H 1.09007 * 110.71938 * 80.94360 * 26 25 24 46 46 H 1.09000 * 110.30189 * 263.03851 * 27 26 25 47 47 H 1.08991 * 110.30812 * 140.87179 * 27 26 25 48 48 H 1.08999 * 109.91967 * 333.51319 * 28 24 23 49 49 H 1.09001 * 109.91142 * 94.80664 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 1 1.3061 -1.4456 1.6187 6 7 2.4481 0.1992 2.2902 7 6 2.4971 -0.2063 3.5972 8 1 2.2463 -1.2244 3.8566 9 6 2.8702 0.6907 4.5887 10 7 3.1764 1.9311 4.2726 11 14 2.9378 0.1373 6.3715 12 1 4.2949 -0.3822 6.6775 13 1 2.6372 1.2893 7.2591 14 1 1.9352 -0.9350 6.5954 15 6 3.2921 -1.5098 0.7000 16 6 2.8197 -1.8769 -0.7341 17 7 2.0332 -0.7136 -1.1829 18 6 1.8127 -0.3618 -2.4651 19 8 1.1460 0.6222 -2.7194 20 6 2.3807 -1.1736 -3.5626 21 6 2.1480 -0.8132 -4.8960 22 6 2.7047 -1.6001 -5.8876 23 6 3.4550 -2.7114 -5.4994 24 7 4.0264 -3.5318 -6.4581 25 6 5.0204 -2.7866 -7.2722 26 6 5.8957 -3.9115 -7.8800 27 6 5.9863 -4.9392 -6.7285 28 6 4.7724 -4.6429 -5.8285 29 7 3.6198 -2.9814 -4.2090 30 7 3.1087 -2.2491 -3.2871 31 1 -0.3633 0.4980 0.8989 32 1 -0.3633 0.5295 -0.8808 33 1 -0.3633 -1.0275 -0.0183 34 1 2.6738 1.1133 2.0573 35 1 3.4367 2.5581 4.9655 36 1 4.1679 -0.8616 0.6692 37 1 3.4907 -2.4043 1.2904 38 1 2.1957 -2.7703 -0.7106 39 1 3.6769 -2.0309 -1.3896 40 1 1.5550 0.0551 -5.1421 41 1 2.5593 -1.3645 -6.9316 42 1 4.5247 -2.2176 -8.0586 43 1 5.6204 -2.1308 -6.6414 44 1 6.8847 -3.5336 -8.1384 45 1 5.4094 -4.3503 -8.7513 46 1 6.9130 -4.8021 -6.1713 47 1 5.9270 -5.9540 -7.1217 48 1 5.1101 -4.3476 -4.8350 49 1 4.1364 -5.5255 -5.7603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987330065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:42 Heat of formation + Delta-G solvation = 47.752185 kcal Electronic energy + Delta-G solvation = -30179.982536 eV Core-core repulsion = 26142.810676 eV Total energy + Delta-G solvation = -4037.171860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.57990 -41.20269 -39.76917 -38.81742 -35.98481 -34.74754 -34.28198 -33.35281 -32.30767 -31.29064 -30.30659 -30.05110 -26.90540 -26.29656 -25.65583 -24.78049 -23.87000 -22.54017 -21.87437 -21.77846 -20.87170 -19.28381 -18.85186 -18.64534 -18.05855 -17.52582 -17.06460 -16.57702 -16.54654 -16.17009 -15.58656 -15.52400 -15.39541 -15.00692 -14.92518 -14.63040 -14.52553 -14.27608 -14.12439 -13.72950 -13.64283 -13.33002 -13.25659 -13.21998 -12.99301 -12.82426 -12.61875 -12.44942 -12.25773 -12.15681 -12.13445 -12.10149 -11.71697 -11.62680 -11.54443 -11.48170 -11.36852 -11.15776 -10.91687 -10.75357 -9.81566 -9.58936 -9.02455 -7.93415 -5.23419 -0.69266 -0.32897 1.45062 1.49690 1.51139 1.59461 1.68928 2.24054 2.49633 2.57577 2.82155 3.19713 3.37520 3.45284 3.54331 3.64685 3.70456 3.75097 3.83036 3.87504 4.00464 4.09889 4.18532 4.27722 4.33233 4.36201 4.41098 4.48865 4.51903 4.62144 4.67434 4.68537 4.81016 4.85735 4.86824 4.95990 5.00266 5.03924 5.07099 5.13918 5.20552 5.21062 5.23338 5.31771 5.42356 5.54861 5.55296 5.74249 6.26463 6.37171 6.83854 7.33373 7.40799 8.04361 8.29131 9.30027 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.002218 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.463784 B =12618.844498 C =13605.849572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.131 3.869 3 H 0.054 0.946 4 C 0.172 3.828 5 H 0.073 0.927 6 N -0.727 5.727 7 C -0.236 4.236 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.288 1.288 13 H -0.299 1.299 14 H -0.267 1.267 15 C -0.148 4.148 16 C 0.113 3.887 17 N -0.589 5.589 18 C 0.584 3.416 19 O -0.562 6.562 20 C -0.009 4.009 21 C -0.046 4.046 22 C -0.114 4.114 23 C 0.257 3.743 24 N -0.456 5.456 25 C 0.036 3.964 26 C -0.117 4.117 27 C -0.130 4.130 28 C 0.027 3.973 29 N -0.302 5.302 30 N -0.196 5.196 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.372 0.628 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.178 0.822 41 H 0.196 0.804 42 H 0.116 0.884 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 -13.839 -29.527 32.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.073 0.927 4 C 0.062 3.938 5 H 0.091 0.909 6 N -0.366 5.366 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.803 3.197 12 H -0.215 1.215 13 H -0.226 1.226 14 H -0.191 1.191 15 C -0.189 4.189 16 C -0.010 4.010 17 N -0.320 5.320 18 C 0.371 3.629 19 O -0.441 6.441 20 C -0.158 4.158 21 C -0.074 4.074 22 C -0.145 4.145 23 C 0.019 3.981 24 N -0.174 5.174 25 C -0.088 4.088 26 C -0.155 4.155 27 C -0.168 4.168 28 C -0.100 4.100 29 N -0.151 5.151 30 N -0.042 5.042 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.195 0.805 41 H 0.213 0.787 42 H 0.134 0.866 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.085 0.915 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.244 -14.623 -28.776 32.441 hybrid contribution 0.013 1.618 0.821 1.814 sum 3.258 -13.005 -27.955 31.004 Atomic orbital electron populations 1.21942 0.93612 1.02471 1.02187 1.21760 0.95296 0.95623 0.84587 0.92745 1.21418 0.94828 0.91064 0.86441 0.90934 1.42496 1.80865 1.10428 1.02844 1.19615 1.36811 0.96060 0.84255 0.89950 1.25580 1.03095 0.95964 1.02199 1.69830 1.54262 1.04843 1.33178 0.85130 0.77831 0.76776 0.79951 1.21498 1.22606 1.19146 1.23521 0.99114 1.01287 0.94974 1.22745 0.96128 0.87112 0.95000 1.48423 1.50514 1.28811 1.04221 1.17453 0.80364 0.83785 0.81326 1.90761 1.41734 1.28086 1.83487 1.22497 1.01747 0.96625 0.94900 1.22473 0.95125 0.99718 0.90106 1.22278 0.95953 0.93041 1.03222 1.22028 0.94033 0.91088 0.90925 1.61793 1.30373 1.08202 1.17039 1.23590 0.91766 0.96803 0.96637 1.22548 1.00444 0.94384 0.98149 1.22460 0.96772 1.01188 0.96406 1.23021 0.95398 0.93240 0.98322 1.73303 1.18445 1.24374 0.98955 1.73248 1.03661 1.01166 1.26130 0.91705 0.92351 0.91507 0.79603 0.94104 0.92644 0.89318 0.90091 0.88019 0.80504 0.78672 0.86614 0.92977 0.88679 0.89226 0.90714 0.89334 0.91548 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.10 71.98 0.66 -4.27 16 2 C 0.13 4.89 3.20 45.34 0.15 5.04 16 3 H 0.05 2.31 7.70 -2.38 -0.02 2.29 16 4 C 0.17 6.82 3.11 46.18 0.14 6.96 16 5 H 0.07 2.80 7.82 -2.39 -0.02 2.78 16 6 N -0.73 -36.46 5.24 -317.32 -1.66 -38.13 16 7 C -0.24 -12.81 9.97 84.03 0.84 -11.97 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 10 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 11 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 C -0.15 -5.15 6.80 32.15 0.22 -4.93 16 16 C 0.11 3.39 5.97 87.02 0.52 3.91 16 17 N -0.59 -19.71 3.07 -790.45 -2.43 -22.14 16 18 C 0.58 19.24 7.63 86.79 0.66 19.90 16 19 O -0.56 -20.84 15.44 -3.88 -0.06 -20.90 16 20 C -0.01 -0.23 6.80 42.00 0.29 0.05 16 21 C -0.05 -0.90 9.71 22.73 0.22 -0.68 16 22 C -0.11 -1.68 9.57 22.61 0.22 -1.46 16 23 C 0.26 4.77 6.27 133.21 0.84 5.61 16 24 N -0.46 -6.43 5.29 -688.95 -3.65 -10.07 16 25 C 0.04 0.31 6.06 86.65 0.53 0.83 16 26 C -0.12 -0.66 7.06 31.80 0.22 -0.44 16 27 C -0.13 -1.09 6.93 31.48 0.22 -0.87 16 28 C 0.03 0.38 6.35 86.45 0.55 0.93 16 29 N -0.30 -7.35 9.32 -55.16 -0.51 -7.87 16 30 N -0.20 -5.34 7.79 -48.50 -0.38 -5.72 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.03 6.91 -2.39 -0.02 2.01 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.37 20.47 7.53 -92.71 -0.70 19.77 16 35 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 3.01 5.89 -2.39 -0.01 3.00 16 40 H 0.18 2.96 7.71 -2.91 -0.02 2.94 16 41 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.05 0.54 7.99 -2.39 -0.02 0.53 16 44 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.07 1.22 6.50 -2.39 -0.02 1.21 16 49 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.42 391.94 0.62 -69.80 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.27 Total: 31.72 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.72 Total: 14.74 kcal Atomic # 7 Polarization: -134.93 SS G_CDS: -8.34 Total: -143.27 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -70.42 0.62 -69.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987330065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.554 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds