Wall clock time and date at job start Wed Apr 1 2020 03:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00114 * 2 1 4 4 C 1.54331 * 109.87888 * 121.09263 * 2 1 3 5 5 C 1.55149 * 102.94321 * 97.22242 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31622 * 119.99400 * 179.72313 * 10 8 7 12 12 Si 1.86800 * 120.00144 * 359.72086 * 10 8 7 13 13 H 1.48506 * 109.46719 * 90.00417 * 12 10 8 14 14 H 1.48501 * 109.46793 * 210.00071 * 12 10 8 15 15 H 1.48489 * 109.47333 * 330.00315 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88562 * 238.89829 * 2 1 3 18 18 C 1.34781 * 125.65005 * 59.57409 * 17 2 1 19 19 O 1.21479 * 119.99578 * 359.97438 * 18 17 2 20 20 C 1.48439 * 120.00205 * 179.97438 * 18 17 2 21 21 C 1.39077 * 120.50725 * 179.97438 * 20 18 17 22 22 C 1.39857 * 118.18890 * 179.97438 * 21 20 18 23 23 N 1.38509 * 120.51088 * 180.02562 * 22 21 20 24 24 C 1.48532 * 111.00269 * 62.59705 * 23 22 21 25 25 C 1.54941 * 103.22418 * 159.72099 * 24 23 22 26 26 C 1.54597 * 102.92337 * 322.58785 * 25 24 23 27 27 C 1.47900 * 110.99945 * 179.97438 * 23 22 21 28 28 N 1.32841 * 118.97455 * 359.97438 * 22 21 20 29 29 C 1.31844 * 120.91173 * 359.97438 * 28 22 21 30 30 N 1.31563 * 122.00658 * 359.74638 * 29 28 22 31 31 H 1.08999 * 109.47742 * 298.91261 * 1 2 3 32 32 H 1.09004 * 109.46495 * 58.91252 * 1 2 3 33 33 H 1.08999 * 109.47367 * 178.90506 * 1 2 3 34 34 H 1.09007 * 110.71733 * 338.85884 * 4 2 1 35 35 H 1.08999 * 110.71890 * 215.59355 * 4 2 1 36 36 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 37 37 H 0.97009 * 119.99492 * 179.97438 * 11 10 8 38 38 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 39 39 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 40 40 H 1.07993 * 120.90804 * 359.95436 * 21 20 18 41 41 H 1.08999 * 110.67004 * 278.15547 * 24 23 22 42 42 H 1.09000 * 110.66858 * 41.29168 * 24 23 22 43 43 H 1.09002 * 110.72233 * 204.23050 * 25 24 23 44 44 H 1.08996 * 110.87632 * 81.01796 * 25 24 23 45 45 H 1.09003 * 110.30559 * 263.04116 * 26 25 24 46 46 H 1.09002 * 110.38974 * 140.91572 * 26 25 24 47 47 H 1.08998 * 109.91705 * 333.50662 * 27 23 22 48 48 H 1.08999 * 109.91922 * 94.59926 * 27 23 22 49 49 H 1.07995 * 118.99631 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 2.3517 -2.1695 0.6927 6 1 1.4452 -2.7738 0.6612 7 7 3.3935 -2.8312 1.4820 8 6 3.4566 -4.1985 1.5232 9 1 2.7381 -4.7890 0.9742 10 6 4.4402 -4.8255 2.2758 11 7 4.4975 -6.1397 2.3198 12 14 5.6825 -3.8040 3.2260 13 1 5.1609 -3.5333 4.5898 14 1 6.9635 -4.5487 3.3247 15 1 5.9105 -2.5183 2.5190 16 6 2.8568 -1.8499 -0.7365 17 7 2.0301 -0.7141 -1.1837 18 6 1.7757 -0.3845 -2.4656 19 8 1.0779 0.5772 -2.7184 20 6 2.3482 -1.1966 -3.5684 21 6 2.0921 -0.8663 -4.8949 22 6 2.6564 -1.6643 -5.8953 23 7 2.4332 -1.3788 -7.2321 24 6 2.9855 -0.0477 -7.5916 25 6 3.1276 -0.1272 -9.1324 26 6 3.5777 -1.5881 -9.3632 27 6 3.1261 -2.3514 -8.1047 28 7 3.4106 -2.6997 -5.5435 29 6 3.6295 -2.9778 -4.2734 30 7 3.1218 -2.2493 -3.3026 31 1 -0.3634 0.4968 0.8995 32 1 -0.3632 0.5307 -0.8801 33 1 -0.3634 -1.0274 -0.0196 34 1 1.2916 -0.7889 2.0202 35 1 2.9655 -0.2831 1.6184 36 1 4.0386 -2.3008 1.9755 37 1 5.1851 -6.5779 2.8454 38 1 3.9091 -1.5669 -0.7125 39 1 2.7089 -2.7082 -1.3919 40 1 1.4740 -0.0170 -5.1457 41 1 2.2928 0.7452 -7.3095 42 1 3.9578 0.1047 -7.1231 43 1 3.8864 0.5707 -9.4863 44 1 2.1721 0.0637 -9.6209 45 1 4.6616 -1.6380 -9.4672 46 1 3.0939 -1.9991 -10.2493 47 1 3.9937 -2.7616 -7.5878 48 1 2.4436 -3.1555 -8.3798 49 1 4.2479 -3.8268 -4.0224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989450786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:48 Heat of formation + Delta-G solvation = 62.952894 kcal Electronic energy + Delta-G solvation = -30505.090952 eV Core-core repulsion = 26468.578244 eV Total energy + Delta-G solvation = -4036.512708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60577 -40.02680 -38.94475 -37.54084 -34.41424 -34.25463 -32.90777 -31.63699 -31.33408 -30.24713 -29.40362 -28.82396 -25.74456 -25.38969 -24.33661 -23.60983 -22.52460 -21.55973 -21.11296 -20.29841 -19.48173 -17.98320 -17.83405 -17.62555 -16.54148 -15.91314 -15.86376 -15.69362 -15.57396 -15.02987 -14.87773 -14.50587 -14.23686 -13.99747 -13.67531 -13.54802 -13.35666 -13.10180 -13.01047 -12.73786 -12.63250 -12.49284 -12.00911 -11.95533 -11.82455 -11.67102 -11.53405 -11.26063 -11.09849 -11.04045 -10.93520 -10.65564 -10.63678 -10.36963 -10.17076 -10.12810 -10.02196 -9.63922 -9.36099 -8.95136 -8.86331 -8.42333 -7.35982 -5.82416 -3.19738 0.42599 0.76983 2.70976 2.84117 3.17950 3.34001 3.36657 3.42453 3.72130 3.88264 3.90351 4.12804 4.35745 4.44749 4.53926 4.58544 4.77301 4.84980 4.88384 5.00036 5.08274 5.10573 5.14472 5.25526 5.32370 5.36438 5.36654 5.42106 5.52634 5.53282 5.57636 5.61271 5.72936 5.78555 5.83384 5.87951 5.95366 6.04783 6.13728 6.18013 6.24562 6.38495 6.52044 6.61551 6.74929 6.78482 6.81838 7.61886 7.85110 7.92672 8.15083 8.36195 9.12993 9.85147 10.03464 11.35371 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.002825 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.588961 B = 9909.941794 C =11574.161380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.143 4.143 5 C 0.175 3.825 6 H 0.075 0.925 7 N -0.735 5.735 8 C -0.248 4.248 9 H 0.092 0.908 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.077 3.923 17 N -0.584 5.584 18 C 0.579 3.421 19 O -0.539 6.539 20 C 0.152 3.848 21 C -0.179 4.179 22 C 0.344 3.656 23 N -0.459 5.459 24 C 0.043 3.957 25 C -0.123 4.123 26 C -0.133 4.133 27 C 0.033 3.967 28 N -0.546 5.546 29 C 0.321 3.679 30 N -0.498 5.498 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.364 0.636 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.157 0.843 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 13.386 -19.883 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.182 4.182 5 C 0.063 3.937 6 H 0.093 0.907 7 N -0.376 5.376 8 C -0.377 4.377 9 H 0.110 0.890 10 C -0.188 4.188 11 N -0.577 5.577 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.048 4.048 17 N -0.315 5.315 18 C 0.365 3.635 19 O -0.416 6.416 20 C 0.006 3.994 21 C -0.205 4.205 22 C 0.103 3.897 23 N -0.177 5.177 24 C -0.083 4.083 25 C -0.161 4.161 26 C -0.171 4.171 27 C -0.093 4.093 28 N -0.266 5.266 29 C 0.032 3.968 30 N -0.215 5.215 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.197 0.803 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.175 0.825 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.103 0.897 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.618 12.884 -19.931 24.007 hybrid contribution 1.264 1.070 0.627 1.770 sum -2.354 13.954 -19.304 23.935 Atomic orbital electron populations 1.22144 0.94636 1.02629 1.02599 1.21589 0.94708 0.95940 0.84351 0.90884 1.23092 1.01711 0.97411 0.95962 1.21345 0.92667 0.90883 0.88810 0.90715 1.42644 1.33911 1.04422 1.56626 1.19074 1.12689 0.80517 1.25461 0.88988 1.24667 0.98830 0.95283 0.99990 1.69704 1.36276 1.06895 1.44862 0.86579 0.81851 0.79741 0.80501 1.21035 1.21722 1.20267 1.23768 0.94143 0.88160 0.98760 1.48475 1.48636 1.30502 1.03890 1.17394 0.80984 0.83763 0.81337 1.90745 1.39174 1.28367 1.83312 1.21449 0.93022 0.92068 0.92826 1.22296 1.03142 1.03189 0.91877 1.20174 0.88492 0.89899 0.91158 1.61733 1.51224 1.05245 0.99533 1.23381 0.99171 0.89170 0.96570 1.22517 1.02551 0.96886 0.94154 1.22452 1.01427 0.95166 0.98060 1.22946 0.99447 0.94717 0.92204 1.68266 1.16182 1.19736 1.22424 1.25013 0.93030 0.96464 0.82273 1.68815 1.10083 1.05449 1.37195 0.91690 0.91387 0.92179 0.89790 0.90797 0.80316 0.92972 0.91456 0.87815 0.82501 0.88660 0.92371 0.90232 0.90134 0.90996 0.90505 0.89645 0.89661 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.05 37.16 0.34 -1.78 16 2 C 0.14 1.95 3.49 -66.95 -0.23 1.72 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.09 6.14 -24.90 -0.15 -2.25 16 5 C 0.17 3.18 3.71 -65.78 -0.24 2.93 16 6 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 7 N -0.73 -16.32 5.05 -51.35 -0.26 -16.58 16 8 C -0.25 -6.63 10.44 -15.06 -0.16 -6.79 16 9 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 10 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 11 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 12 Si 0.88 21.29 27.73 -169.99 -4.71 16.58 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 16 C 0.08 1.32 5.65 -2.53 -0.01 1.31 16 17 N -0.58 -9.26 3.08 -163.90 -0.50 -9.76 16 18 C 0.58 9.39 7.64 -12.06 -0.09 9.30 16 19 O -0.54 -9.37 15.32 5.38 0.08 -9.29 16 20 C 0.15 2.27 6.74 -82.71 -0.56 1.71 16 21 C -0.18 -2.34 9.13 -38.66 -0.35 -2.70 16 22 C 0.34 4.22 6.22 -154.85 -0.96 3.26 16 23 N -0.46 -4.65 5.30 -169.06 -0.90 -5.55 16 24 C 0.04 0.33 6.08 -1.90 -0.01 0.32 16 25 C -0.12 -0.70 7.06 -24.87 -0.18 -0.88 16 26 C -0.13 -0.82 6.93 -25.39 -0.18 -0.99 16 27 C 0.03 0.29 6.36 -2.77 -0.02 0.27 16 28 N -0.55 -6.91 8.28 -13.82 -0.11 -7.02 16 29 C 0.32 4.18 12.27 -92.31 -1.13 3.04 16 30 N -0.50 -7.42 6.79 -11.22 -0.08 -7.50 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.97 6.77 -51.93 -0.35 0.62 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.13 7.83 -51.92 -0.41 0.72 16 35 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 36 H 0.36 7.94 5.63 -40.82 -0.23 7.71 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 1.89 5.93 -51.93 -0.31 1.58 16 40 H 0.16 1.91 7.73 -52.49 -0.41 1.51 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.48 7.99 -51.93 -0.42 0.06 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.84 6.53 -51.93 -0.34 0.50 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.21 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -31.77 389.03 -11.42 -43.19 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.53 Total: 9.00 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -4.04 Total: 8.62 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.08 Total: -73.96 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.77 -11.42 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989450786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.143 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds