Wall clock time and date at job start Wed Apr 1 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00114 * 2 1 4 4 C 1.54331 * 109.87888 * 121.09263 * 2 1 3 5 5 C 1.55149 * 102.94321 * 97.22242 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31622 * 119.99400 * 179.72313 * 10 8 7 12 12 Si 1.86800 * 120.00144 * 359.72086 * 10 8 7 13 13 H 1.48506 * 109.46719 * 90.00417 * 12 10 8 14 14 H 1.48501 * 109.46793 * 210.00071 * 12 10 8 15 15 H 1.48489 * 109.47333 * 330.00315 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88562 * 238.89829 * 2 1 3 18 18 C 1.34781 * 125.65005 * 59.57409 * 17 2 1 19 19 O 1.21479 * 119.99578 * 359.97438 * 18 17 2 20 20 C 1.48439 * 120.00205 * 179.97438 * 18 17 2 21 21 C 1.39077 * 120.50725 * 179.97438 * 20 18 17 22 22 C 1.39857 * 118.18890 * 179.97438 * 21 20 18 23 23 N 1.38509 * 120.51088 * 180.02562 * 22 21 20 24 24 C 1.48532 * 111.00269 * 62.59705 * 23 22 21 25 25 C 1.54941 * 103.22418 * 159.72099 * 24 23 22 26 26 C 1.54597 * 102.92337 * 322.58785 * 25 24 23 27 27 C 1.47900 * 110.99945 * 179.97438 * 23 22 21 28 28 N 1.32841 * 118.97455 * 359.97438 * 22 21 20 29 29 C 1.31844 * 120.91173 * 359.97438 * 28 22 21 30 30 N 1.31563 * 122.00658 * 359.74638 * 29 28 22 31 31 H 1.08999 * 109.47742 * 298.91261 * 1 2 3 32 32 H 1.09004 * 109.46495 * 58.91252 * 1 2 3 33 33 H 1.08999 * 109.47367 * 178.90506 * 1 2 3 34 34 H 1.09007 * 110.71733 * 338.85884 * 4 2 1 35 35 H 1.08999 * 110.71890 * 215.59355 * 4 2 1 36 36 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 37 37 H 0.97009 * 119.99492 * 179.97438 * 11 10 8 38 38 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 39 39 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 40 40 H 1.07993 * 120.90804 * 359.95436 * 21 20 18 41 41 H 1.08999 * 110.67004 * 278.15547 * 24 23 22 42 42 H 1.09000 * 110.66858 * 41.29168 * 24 23 22 43 43 H 1.09002 * 110.72233 * 204.23050 * 25 24 23 44 44 H 1.08996 * 110.87632 * 81.01796 * 25 24 23 45 45 H 1.09003 * 110.30559 * 263.04116 * 26 25 24 46 46 H 1.09002 * 110.38974 * 140.91572 * 26 25 24 47 47 H 1.08998 * 109.91705 * 333.50662 * 27 23 22 48 48 H 1.08999 * 109.91922 * 94.59926 * 27 23 22 49 49 H 1.07995 * 118.99631 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 2.3517 -2.1695 0.6927 6 1 1.4452 -2.7738 0.6612 7 7 3.3935 -2.8312 1.4820 8 6 3.4566 -4.1985 1.5232 9 1 2.7381 -4.7890 0.9742 10 6 4.4402 -4.8255 2.2758 11 7 4.4975 -6.1397 2.3198 12 14 5.6825 -3.8040 3.2260 13 1 5.1609 -3.5333 4.5898 14 1 6.9635 -4.5487 3.3247 15 1 5.9105 -2.5183 2.5190 16 6 2.8568 -1.8499 -0.7365 17 7 2.0301 -0.7141 -1.1837 18 6 1.7757 -0.3845 -2.4656 19 8 1.0779 0.5772 -2.7184 20 6 2.3482 -1.1966 -3.5684 21 6 2.0921 -0.8663 -4.8949 22 6 2.6564 -1.6643 -5.8953 23 7 2.4332 -1.3788 -7.2321 24 6 2.9855 -0.0477 -7.5916 25 6 3.1276 -0.1272 -9.1324 26 6 3.5777 -1.5881 -9.3632 27 6 3.1261 -2.3514 -8.1047 28 7 3.4106 -2.6997 -5.5435 29 6 3.6295 -2.9778 -4.2734 30 7 3.1218 -2.2493 -3.3026 31 1 -0.3634 0.4968 0.8995 32 1 -0.3632 0.5307 -0.8801 33 1 -0.3634 -1.0274 -0.0196 34 1 1.2916 -0.7889 2.0202 35 1 2.9655 -0.2831 1.6184 36 1 4.0386 -2.3008 1.9755 37 1 5.1851 -6.5779 2.8454 38 1 3.9091 -1.5669 -0.7125 39 1 2.7089 -2.7082 -1.3919 40 1 1.4740 -0.0170 -5.1457 41 1 2.2928 0.7452 -7.3095 42 1 3.9578 0.1047 -7.1231 43 1 3.8864 0.5707 -9.4863 44 1 2.1721 0.0637 -9.6209 45 1 4.6616 -1.6380 -9.4672 46 1 3.0939 -1.9991 -10.2493 47 1 3.9937 -2.7616 -7.5878 48 1 2.4436 -3.1555 -8.3798 49 1 4.2479 -3.8268 -4.0224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989450786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:47 Heat of formation + Delta-G solvation = 44.017957 kcal Electronic energy + Delta-G solvation = -30505.912032 eV Core-core repulsion = 26468.578244 eV Total energy + Delta-G solvation = -4037.333789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.62025 -41.20760 -39.79221 -38.88700 -36.11530 -35.25894 -33.86575 -33.49237 -32.59763 -31.09621 -30.43534 -30.03889 -26.91753 -26.57533 -25.40293 -25.26681 -23.62595 -22.49958 -21.93923 -21.61638 -20.64172 -19.71678 -18.99226 -18.76929 -17.52820 -17.12826 -16.96139 -16.75454 -16.61274 -16.40777 -15.89261 -15.79937 -15.49308 -15.27385 -14.96768 -14.70031 -14.56180 -14.33357 -14.19182 -13.95118 -13.67730 -13.40477 -13.31547 -13.21932 -13.11024 -12.83362 -12.43160 -12.39345 -12.23851 -12.12360 -12.04662 -11.97906 -11.84000 -11.75927 -11.50213 -11.41612 -11.39574 -11.13585 -11.00414 -10.35201 -9.81970 -9.66236 -9.30000 -7.98354 -5.33481 -0.67369 -0.22911 1.42660 1.45559 1.51975 1.53552 1.66536 2.27441 2.52209 2.65039 2.74303 3.00362 3.30253 3.34654 3.52429 3.63929 3.74057 3.77676 3.80334 3.89608 4.04930 4.06287 4.10169 4.24420 4.37259 4.40531 4.42508 4.45065 4.45466 4.60367 4.70675 4.80577 4.85150 4.90474 4.91669 4.99726 5.01046 5.09827 5.11522 5.13967 5.18887 5.24593 5.38336 5.39848 5.44933 5.74904 5.80528 5.82915 6.24420 6.31994 6.75627 6.95134 7.10114 7.83366 8.03545 9.22718 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.002825 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.588961 B = 9909.941794 C =11574.161380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.134 3.866 3 H 0.086 0.914 4 C -0.129 4.129 5 C 0.166 3.834 6 H 0.062 0.938 7 N -0.735 5.735 8 C -0.228 4.228 9 H 0.058 0.942 10 C -0.060 4.060 11 N -0.982 5.982 12 Si 0.953 3.047 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.249 1.249 16 C 0.093 3.907 17 N -0.585 5.585 18 C 0.578 3.422 19 O -0.552 6.552 20 C 0.134 3.866 21 C -0.176 4.176 22 C 0.347 3.653 23 N -0.464 5.464 24 C 0.038 3.962 25 C -0.116 4.116 26 C -0.127 4.127 27 C 0.030 3.970 28 N -0.547 5.547 29 C 0.318 3.682 30 N -0.520 5.520 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.369 0.631 37 H 0.257 0.743 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.165 0.835 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 15.984 -20.747 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.032 3.968 3 H 0.104 0.896 4 C -0.167 4.167 5 C 0.056 3.944 6 H 0.080 0.920 7 N -0.377 5.377 8 C -0.359 4.359 9 H 0.076 0.924 10 C -0.251 4.251 11 N -0.633 5.633 12 Si 0.780 3.220 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.174 1.174 16 C -0.032 4.032 17 N -0.316 5.316 18 C 0.365 3.635 19 O -0.431 6.431 20 C -0.011 4.011 21 C -0.203 4.203 22 C 0.105 3.895 23 N -0.183 5.183 24 C -0.087 4.087 25 C -0.154 4.154 26 C -0.166 4.166 27 C -0.096 4.096 28 N -0.268 5.268 29 C 0.029 3.971 30 N -0.238 5.238 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.182 0.818 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.346 15.553 -20.827 26.208 hybrid contribution 1.053 0.245 0.732 1.306 sum -2.293 15.798 -20.095 25.664 Atomic orbital electron populations 1.22096 0.93694 1.02176 1.03359 1.21754 0.95461 0.96250 0.83338 0.89603 1.23023 1.02850 0.94368 0.96475 1.21462 0.91067 0.92611 0.89246 0.92021 1.42546 1.35073 1.02732 1.57397 1.18986 1.11016 0.82431 1.23468 0.92387 1.25457 1.01448 0.96345 1.01892 1.69888 1.37575 1.09093 1.46712 0.85452 0.78420 0.78938 0.79188 1.20435 1.22741 1.17380 1.23356 0.93816 0.88329 0.97700 1.48478 1.48517 1.30173 1.04454 1.17580 0.80683 0.83658 0.81591 1.90726 1.39825 1.29009 1.83530 1.21385 0.93972 0.92548 0.93149 1.22356 1.03085 1.03429 0.91386 1.20416 0.87664 0.89324 0.92097 1.61778 1.51265 1.06756 0.98484 1.23533 0.98971 0.87977 0.98207 1.22539 1.03562 0.96925 0.92339 1.22450 1.02029 0.95072 0.97006 1.23011 0.98724 0.94835 0.93052 1.68364 1.16318 1.20025 1.22096 1.25389 0.92891 0.96599 0.82242 1.68759 1.10959 1.06011 1.38115 0.89022 0.92591 0.93120 0.88017 0.89669 0.79665 0.93409 0.92150 0.89185 0.81788 0.87942 0.92826 0.88370 0.89458 0.90224 0.89209 0.90903 0.90014 0.76066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.05 71.98 0.65 -3.12 16 2 C 0.13 3.55 3.49 45.34 0.16 3.71 16 3 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.13 -3.45 6.14 31.78 0.20 -3.26 16 5 C 0.17 5.93 3.71 46.38 0.17 6.10 16 6 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 7 N -0.74 -32.02 5.05 -316.38 -1.60 -33.61 16 8 C -0.23 -12.39 10.44 84.03 0.88 -11.51 16 9 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 10 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 11 N -0.98 -61.51 13.97 21.65 0.30 -61.21 16 12 Si 0.95 43.74 27.73 68.60 1.90 45.64 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 15 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 16 C 0.09 3.20 5.65 86.86 0.49 3.69 16 17 N -0.59 -18.15 3.08 -790.76 -2.44 -20.59 16 18 C 0.58 18.57 7.64 86.96 0.66 19.24 16 19 O -0.55 -18.88 15.32 -3.65 -0.06 -18.94 16 20 C 0.13 4.02 6.74 41.84 0.28 4.30 16 21 C -0.18 -4.57 9.13 22.86 0.21 -4.36 16 22 C 0.35 8.37 6.22 133.28 0.83 9.20 16 23 N -0.46 -8.94 5.30 -688.79 -3.65 -12.59 16 24 C 0.04 0.53 6.08 86.65 0.53 1.05 16 25 C -0.12 -1.03 7.06 31.80 0.22 -0.80 16 26 C -0.13 -1.29 6.93 31.46 0.22 -1.07 16 27 C 0.03 0.50 6.36 86.44 0.55 1.05 16 28 N -0.55 -13.79 8.28 -197.65 -1.64 -15.42 16 29 C 0.32 8.33 12.27 180.94 2.22 10.55 16 30 N -0.52 -15.74 6.79 -189.41 -1.29 -17.03 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.51 6.77 -2.38 -0.02 1.50 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.10 2.40 7.83 -2.38 -0.02 2.39 16 35 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 36 H 0.37 15.28 5.63 -92.71 -0.52 14.76 16 37 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 38 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.09 3.37 5.93 -2.39 -0.01 3.35 16 40 H 0.16 3.91 7.73 -2.91 -0.02 3.89 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 0.81 7.99 -2.39 -0.02 0.79 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 1.40 6.53 -2.39 -0.02 1.38 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.22 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -69.64 389.03 0.66 -68.97 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.38 Total: 32.94 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 8.74 Total: 31.82 kcal Atomic # 7 Polarization: -150.14 SS G_CDS: -10.30 Total: -160.45 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.06 Total: -18.94 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.90 Total: 45.64 kcal Total: -69.64 0.66 -68.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989450786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.992 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds