Wall clock time and date at job start Wed Apr 1 2020 03:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.41701 * 2 1 4 4 C 1.54911 * 110.36284 * 122.28916 * 2 1 3 5 5 C 1.55158 * 101.58110 * 155.85071 * 4 2 1 6 6 H 1.08992 * 110.72335 * 82.85997 * 5 4 2 7 7 N 1.46500 * 110.72329 * 206.13818 * 5 4 2 8 8 C 1.36936 * 120.00052 * 199.97707 * 7 5 4 9 9 H 1.07991 * 120.00161 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99778 * 179.97438 * 8 7 5 11 11 N 1.31621 * 120.00074 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99957 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46865 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46748 * 119.99959 * 12 10 8 15 15 H 1.48498 * 109.47133 * 240.00045 * 12 10 8 16 16 C 1.54327 * 102.94049 * 324.49567 * 5 4 2 17 17 N 1.47020 * 107.39839 * 22.11834 * 16 5 4 18 18 C 1.34780 * 125.64572 * 181.09780 * 17 16 5 19 19 O 1.21523 * 120.00247 * 180.02562 * 18 17 16 20 20 C 1.48130 * 120.00086 * 0.02729 * 18 17 16 21 21 C 1.39245 * 120.04913 * 179.72156 * 20 18 17 22 22 N 1.32197 * 120.06386 * 179.70474 * 21 20 18 23 23 C 1.31922 * 120.17051 * 0.57129 * 22 21 20 24 24 C 1.39674 * 120.08708 * 359.70614 * 23 22 21 25 25 N 1.38976 * 120.02968 * 180.02562 * 24 23 22 26 26 C 1.48529 * 111.00151 * 176.72046 * 25 24 23 27 27 C 1.54936 * 103.23266 * 159.72124 * 26 25 24 28 28 C 1.54598 * 102.91955 * 322.58610 * 27 26 25 29 29 C 1.47907 * 110.99939 * 294.11550 * 25 24 23 30 30 N 1.32343 * 119.93739 * 0.02562 * 24 23 22 31 31 H 1.08996 * 109.47006 * 297.71325 * 1 2 3 32 32 H 1.08999 * 109.46803 * 57.71016 * 1 2 3 33 33 H 1.08997 * 109.46861 * 177.70870 * 1 2 3 34 34 H 1.09004 * 111.00691 * 37.77761 * 4 2 1 35 35 H 1.09003 * 111.04151 * 273.93337 * 4 2 1 36 36 H 0.97000 * 119.99865 * 19.96906 * 7 5 4 37 37 H 0.96996 * 120.00038 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.88033 * 141.61023 * 16 5 4 39 39 H 1.08997 * 109.88398 * 262.62042 * 16 5 4 40 40 H 1.08001 * 119.96832 * 0.02562 * 21 20 18 41 41 H 1.07994 * 119.96025 * 179.72610 * 23 22 21 42 42 H 1.09003 * 110.66287 * 278.15425 * 26 25 24 43 43 H 1.08998 * 110.66912 * 41.28338 * 26 25 24 44 44 H 1.08991 * 110.72455 * 204.22574 * 27 26 25 45 45 H 1.09004 * 110.72098 * 80.93874 * 27 26 25 46 46 H 1.09006 * 110.30992 * 263.04399 * 28 27 26 47 47 H 1.08993 * 110.39412 * 140.91261 * 28 27 26 48 48 H 1.08997 * 109.91734 * 333.50558 * 29 25 24 49 49 H 1.09002 * 109.91966 * 94.80519 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0691 -0.7758 1.2277 5 6 3.4778 -1.1997 0.7344 6 1 4.1944 -0.3902 0.8723 7 7 3.9250 -2.4128 1.4233 8 6 5.2568 -2.7292 1.4577 9 1 5.9775 -2.0847 0.9766 10 6 5.6805 -3.8784 2.1109 11 7 4.8022 -4.6637 2.6976 12 14 7.4973 -4.3104 2.1572 13 1 8.2714 -3.2731 1.4292 14 1 7.9560 -4.3704 3.5683 15 1 7.7088 -5.6308 1.5113 16 6 3.2494 -1.4769 -0.7665 17 7 2.0425 -0.7412 -1.1708 18 6 1.4977 -0.7427 -2.4036 19 8 0.4943 -0.0940 -2.6253 20 6 2.1222 -1.5350 -3.4883 21 6 1.5570 -1.5418 -4.7609 22 7 2.1173 -2.2441 -5.7306 23 6 3.2066 -2.9496 -5.4941 24 6 3.7760 -2.9522 -4.2186 25 7 4.9239 -3.6953 -3.9709 26 6 5.3991 -3.4926 -2.5784 27 6 6.2962 -4.7304 -2.3260 28 6 5.5406 -5.8607 -3.0618 29 6 4.6551 -5.1442 -4.0983 30 7 3.2213 -2.2462 -3.2463 31 1 -0.3633 0.4779 0.9098 32 1 -0.3633 0.5490 -0.8688 33 1 -0.3633 -1.0268 -0.0411 34 1 1.4510 -1.6480 1.4410 35 1 2.1398 -0.1268 2.1006 36 1 3.2776 -2.9919 1.8552 37 1 5.0982 -5.4669 3.1537 38 1 4.1065 -1.1281 -1.3425 39 1 3.1041 -2.5450 -0.9283 40 1 0.6629 -0.9687 -4.9571 41 1 3.6590 -3.5256 -6.2877 42 1 5.9805 -2.5738 -2.5003 43 1 4.5594 -3.4780 -1.8836 44 1 6.3671 -4.9444 -1.2597 45 1 7.2863 -4.5836 -2.7578 46 1 4.9232 -6.4221 -2.3605 47 1 6.2449 -6.5258 -3.5613 48 1 3.6041 -5.3464 -3.8919 49 1 4.9109 -5.4825 -5.1024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989521176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:00 Heat of formation + Delta-G solvation = 57.438679 kcal Electronic energy + Delta-G solvation = -32141.969622 eV Core-core repulsion = 28105.217800 eV Total energy + Delta-G solvation = -4036.751822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56055 -39.81917 -38.67982 -37.33149 -34.58109 -34.19122 -32.99789 -31.48683 -31.27192 -29.40946 -29.02890 -28.44555 -25.80694 -25.12487 -24.28600 -23.85085 -22.15648 -21.11660 -20.85638 -20.29527 -19.34073 -17.86932 -17.27535 -17.11967 -16.78731 -16.36310 -16.22412 -15.99720 -15.30484 -14.93822 -14.41209 -14.01058 -13.82289 -13.70344 -13.43316 -13.33897 -13.25611 -12.83558 -12.73747 -12.59151 -12.39890 -12.13422 -11.95774 -11.82367 -11.72962 -11.37862 -11.29006 -11.21214 -11.03446 -10.98292 -10.76169 -10.71330 -10.42543 -10.34202 -10.08257 -9.95006 -9.90485 -9.78850 -9.22013 -8.95880 -8.53753 -8.26196 -7.12521 -5.89272 -3.19495 0.34358 0.95371 2.74214 2.97812 3.32052 3.36183 3.40387 3.41799 3.72279 4.00831 4.12753 4.37950 4.46568 4.58864 4.74175 4.85775 4.93539 5.05206 5.10299 5.14005 5.19424 5.24175 5.39500 5.44309 5.47673 5.54193 5.67074 5.70179 5.79520 5.85934 5.88521 5.92771 6.01309 6.08607 6.10632 6.12273 6.25781 6.29133 6.31269 6.38137 6.44372 6.56486 6.58832 6.65598 6.84290 6.94005 7.15215 7.56821 7.59856 7.72189 8.20995 8.28053 9.40103 9.94245 10.29688 11.32796 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008318 B = 0.005573 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.486857 B = 5022.712671 C = 7979.360979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.166 3.834 6 H 0.064 0.936 7 N -0.712 5.712 8 C -0.241 4.241 9 H 0.072 0.928 10 C -0.006 4.006 11 N -0.929 5.929 12 Si 0.898 3.102 13 H -0.278 1.278 14 H -0.292 1.292 15 H -0.290 1.290 16 C 0.091 3.909 17 N -0.586 5.586 18 C 0.584 3.416 19 O -0.540 6.540 20 C 0.063 3.937 21 C 0.073 3.927 22 N -0.425 5.425 23 C 0.067 3.933 24 C 0.256 3.744 25 N -0.459 5.459 26 C 0.043 3.957 27 C -0.126 4.126 28 C -0.129 4.129 29 C 0.045 3.955 30 N -0.434 5.434 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.052 0.948 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 2.542 -12.312 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.054 3.946 6 H 0.082 0.918 7 N -0.352 5.352 8 C -0.372 4.372 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.577 5.577 12 Si 0.729 3.271 13 H -0.203 1.203 14 H -0.219 1.219 15 H -0.217 1.217 16 C -0.035 4.035 17 N -0.318 5.318 18 C 0.370 3.630 19 O -0.418 6.418 20 C -0.079 4.079 21 C -0.087 4.087 22 N -0.138 5.138 23 C -0.099 4.099 24 C 0.019 3.981 25 N -0.178 5.178 26 C -0.082 4.082 27 C -0.164 4.164 28 C -0.167 4.167 29 C -0.080 4.080 30 N -0.157 5.157 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.197 0.803 41 H 0.190 0.810 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.070 0.930 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.000 3.021 -12.818 13.507 hybrid contribution 0.520 -0.800 0.641 1.149 sum -2.480 2.222 -12.177 12.624 Atomic orbital electron populations 1.22125 0.94097 1.02711 1.02863 1.22020 0.94931 0.95413 0.84404 0.90550 1.23150 0.97930 1.00340 0.96124 1.21290 0.92999 0.91081 0.89202 0.91824 1.42358 1.06042 1.23832 1.62942 1.19245 0.83839 1.05129 1.28940 0.91004 1.24701 0.97304 0.97691 1.00572 1.69664 1.32316 1.15419 1.40274 0.86258 0.85251 0.78076 0.77513 1.20320 1.21868 1.21689 1.23443 0.84752 0.96875 0.98398 1.48585 1.28423 1.46676 1.08123 1.17316 0.83420 0.81223 0.81070 1.90722 1.24973 1.44336 1.81801 1.22072 0.93224 0.97209 0.95363 1.23574 1.00181 0.96590 0.88315 1.68512 1.08008 1.04460 1.32851 1.23571 0.92785 0.97794 0.95751 1.21217 0.90312 0.95443 0.91136 1.62133 1.21276 1.06279 1.28160 1.23360 0.99663 0.99271 0.85953 1.22534 0.98437 0.93544 1.01928 1.22408 0.98695 0.98260 0.97380 1.22950 0.99368 0.84620 1.01101 1.68782 1.08077 1.06669 1.32128 0.92108 0.90082 0.92723 0.90488 0.90033 0.77922 0.93464 0.91845 0.90235 0.80308 0.80968 0.89599 0.89310 0.89267 0.91061 0.90710 0.90693 0.92956 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.60 37.16 0.32 -1.86 16 2 C 0.13 1.96 3.78 -66.24 -0.25 1.71 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.09 6.11 -24.58 -0.15 -2.24 16 5 C 0.17 3.01 3.59 -66.09 -0.24 2.78 16 6 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 7 N -0.71 -16.00 5.17 -51.65 -0.27 -16.27 16 8 C -0.24 -5.96 9.98 -15.06 -0.15 -6.11 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -25.96 13.06 55.49 0.72 -25.23 16 12 Si 0.90 20.60 29.55 -169.99 -5.02 15.57 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.09 1.57 4.65 -3.06 -0.01 1.55 16 17 N -0.59 -9.47 3.25 -163.80 -0.53 -10.01 16 18 C 0.58 9.61 7.63 -12.20 -0.09 9.52 16 19 O -0.54 -9.37 14.08 5.35 0.08 -9.29 16 20 C 0.06 0.98 6.71 -82.87 -0.56 0.42 16 21 C 0.07 1.00 10.76 -17.02 -0.18 0.82 16 22 N -0.43 -5.63 10.48 -12.54 -0.13 -5.76 16 23 C 0.07 0.82 10.72 -16.98 -0.18 0.63 16 24 C 0.26 3.54 6.01 -154.89 -0.93 2.61 16 25 N -0.46 -6.02 5.29 -169.08 -0.90 -6.91 16 26 C 0.04 0.65 6.01 -1.90 -0.01 0.64 16 27 C -0.13 -1.76 7.06 -24.87 -0.18 -1.94 16 28 C -0.13 -1.51 6.93 -25.37 -0.18 -1.69 16 29 C 0.05 0.50 6.29 -2.75 -0.02 0.49 16 30 N -0.43 -6.73 5.23 -8.81 -0.05 -6.77 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.20 6.11 -51.93 -0.32 0.88 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.25 7.92 -51.93 -0.41 0.83 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.39 9.43 7.71 -40.82 -0.31 9.11 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.06 1.12 7.55 -51.93 -0.39 0.73 16 39 H 0.08 1.55 6.03 -51.93 -0.31 1.23 16 40 H 0.18 2.20 7.64 -52.49 -0.40 1.80 16 41 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.56 5.29 -51.93 -0.27 1.29 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -28.14 387.50 -10.60 -38.75 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.44 Total: 13.02 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -2.90 Total: 7.07 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.15 Total: -70.96 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.14 -10.60 -38.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989521176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.186 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds