Wall clock time and date at job start Wed Apr 1 2020 03:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.41701 * 2 1 4 4 C 1.54911 * 110.36284 * 122.28916 * 2 1 3 5 5 C 1.55158 * 101.58110 * 155.85071 * 4 2 1 6 6 H 1.08992 * 110.72335 * 82.85997 * 5 4 2 7 7 N 1.46500 * 110.72329 * 206.13818 * 5 4 2 8 8 C 1.36936 * 120.00052 * 199.97707 * 7 5 4 9 9 H 1.07991 * 120.00161 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99778 * 179.97438 * 8 7 5 11 11 N 1.31621 * 120.00074 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99957 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46865 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46748 * 119.99959 * 12 10 8 15 15 H 1.48498 * 109.47133 * 240.00045 * 12 10 8 16 16 C 1.54327 * 102.94049 * 324.49567 * 5 4 2 17 17 N 1.47020 * 107.39839 * 22.11834 * 16 5 4 18 18 C 1.34780 * 125.64572 * 181.09780 * 17 16 5 19 19 O 1.21523 * 120.00247 * 180.02562 * 18 17 16 20 20 C 1.48130 * 120.00086 * 0.02729 * 18 17 16 21 21 C 1.39245 * 120.04913 * 179.72156 * 20 18 17 22 22 N 1.32197 * 120.06386 * 179.70474 * 21 20 18 23 23 C 1.31922 * 120.17051 * 0.57129 * 22 21 20 24 24 C 1.39674 * 120.08708 * 359.70614 * 23 22 21 25 25 N 1.38976 * 120.02968 * 180.02562 * 24 23 22 26 26 C 1.48529 * 111.00151 * 176.72046 * 25 24 23 27 27 C 1.54936 * 103.23266 * 159.72124 * 26 25 24 28 28 C 1.54598 * 102.91955 * 322.58610 * 27 26 25 29 29 C 1.47907 * 110.99939 * 294.11550 * 25 24 23 30 30 N 1.32343 * 119.93739 * 0.02562 * 24 23 22 31 31 H 1.08996 * 109.47006 * 297.71325 * 1 2 3 32 32 H 1.08999 * 109.46803 * 57.71016 * 1 2 3 33 33 H 1.08997 * 109.46861 * 177.70870 * 1 2 3 34 34 H 1.09004 * 111.00691 * 37.77761 * 4 2 1 35 35 H 1.09003 * 111.04151 * 273.93337 * 4 2 1 36 36 H 0.97000 * 119.99865 * 19.96906 * 7 5 4 37 37 H 0.96996 * 120.00038 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.88033 * 141.61023 * 16 5 4 39 39 H 1.08997 * 109.88398 * 262.62042 * 16 5 4 40 40 H 1.08001 * 119.96832 * 0.02562 * 21 20 18 41 41 H 1.07994 * 119.96025 * 179.72610 * 23 22 21 42 42 H 1.09003 * 110.66287 * 278.15425 * 26 25 24 43 43 H 1.08998 * 110.66912 * 41.28338 * 26 25 24 44 44 H 1.08991 * 110.72455 * 204.22574 * 27 26 25 45 45 H 1.09004 * 110.72098 * 80.93874 * 27 26 25 46 46 H 1.09006 * 110.30992 * 263.04399 * 28 27 26 47 47 H 1.08993 * 110.39412 * 140.91261 * 28 27 26 48 48 H 1.08997 * 109.91734 * 333.50558 * 29 25 24 49 49 H 1.09002 * 109.91966 * 94.80519 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0691 -0.7758 1.2277 5 6 3.4778 -1.1997 0.7344 6 1 4.1944 -0.3902 0.8723 7 7 3.9250 -2.4128 1.4233 8 6 5.2568 -2.7292 1.4577 9 1 5.9775 -2.0847 0.9766 10 6 5.6805 -3.8784 2.1109 11 7 4.8022 -4.6637 2.6976 12 14 7.4973 -4.3104 2.1572 13 1 8.2714 -3.2731 1.4292 14 1 7.9560 -4.3704 3.5683 15 1 7.7088 -5.6308 1.5113 16 6 3.2494 -1.4769 -0.7665 17 7 2.0425 -0.7412 -1.1708 18 6 1.4977 -0.7427 -2.4036 19 8 0.4943 -0.0940 -2.6253 20 6 2.1222 -1.5350 -3.4883 21 6 1.5570 -1.5418 -4.7609 22 7 2.1173 -2.2441 -5.7306 23 6 3.2066 -2.9496 -5.4941 24 6 3.7760 -2.9522 -4.2186 25 7 4.9239 -3.6953 -3.9709 26 6 5.3991 -3.4926 -2.5784 27 6 6.2962 -4.7304 -2.3260 28 6 5.5406 -5.8607 -3.0618 29 6 4.6551 -5.1442 -4.0983 30 7 3.2213 -2.2462 -3.2463 31 1 -0.3633 0.4779 0.9098 32 1 -0.3633 0.5490 -0.8688 33 1 -0.3633 -1.0268 -0.0411 34 1 1.4510 -1.6480 1.4410 35 1 2.1398 -0.1268 2.1006 36 1 3.2776 -2.9919 1.8552 37 1 5.0982 -5.4669 3.1537 38 1 4.1065 -1.1281 -1.3425 39 1 3.1041 -2.5450 -0.9283 40 1 0.6629 -0.9687 -4.9571 41 1 3.6590 -3.5256 -6.2877 42 1 5.9805 -2.5738 -2.5003 43 1 4.5594 -3.4780 -1.8836 44 1 6.3671 -4.9444 -1.2597 45 1 7.2863 -4.5836 -2.7578 46 1 4.9232 -6.4221 -2.3605 47 1 6.2449 -6.5258 -3.5613 48 1 3.6041 -5.3464 -3.8919 49 1 4.9109 -5.4825 -5.1024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989521176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:59 Heat of formation + Delta-G solvation = 40.128641 kcal Electronic energy + Delta-G solvation = -32142.720242 eV Core-core repulsion = 28105.217800 eV Total energy + Delta-G solvation = -4037.502442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.66481 -41.08839 -39.76930 -38.69177 -36.00073 -35.60109 -34.10089 -33.23344 -32.51221 -30.47742 -30.17714 -29.98118 -27.02199 -26.39128 -25.72238 -25.31372 -23.39124 -22.23557 -21.96974 -21.73832 -20.56539 -19.25631 -18.87915 -18.28753 -17.83624 -17.64974 -17.38683 -17.11785 -16.74132 -16.38243 -15.81622 -15.43684 -15.22215 -14.94114 -14.88461 -14.54440 -14.42094 -14.31083 -13.91178 -13.64970 -13.51913 -13.40283 -13.30511 -13.09357 -12.96817 -12.84642 -12.81385 -12.43879 -12.28983 -12.23682 -12.16562 -12.07284 -12.04149 -11.70123 -11.59687 -11.47137 -11.17886 -11.00253 -10.94334 -10.22824 -9.77200 -9.44704 -9.02353 -7.90691 -5.19722 -0.74941 -0.12842 1.48034 1.51262 1.53261 1.59052 1.75057 2.28266 2.57777 2.60605 2.84622 3.09326 3.32700 3.40843 3.46319 3.64161 3.76131 3.81311 3.87468 3.93126 3.99915 4.07330 4.18519 4.26086 4.29997 4.35492 4.48567 4.51232 4.51915 4.64745 4.74482 4.82596 4.83690 4.88481 4.95419 5.00938 5.04170 5.10628 5.14079 5.14427 5.20117 5.21873 5.33380 5.45561 5.51164 5.58416 5.78106 6.09048 6.28704 6.35547 6.52865 6.93541 7.37809 8.07481 8.33179 9.32561 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008318 B = 0.005573 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.486857 B = 5022.712671 C = 7979.360979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.093 0.907 4 C -0.124 4.124 5 C 0.160 3.840 6 H 0.067 0.933 7 N -0.720 5.720 8 C -0.227 4.227 9 H 0.076 0.924 10 C -0.061 4.061 11 N -0.966 5.966 12 Si 0.953 3.047 13 H -0.264 1.264 14 H -0.301 1.301 15 H -0.291 1.291 16 C 0.116 3.884 17 N -0.591 5.591 18 C 0.582 3.418 19 O -0.551 6.551 20 C 0.039 3.961 21 C 0.080 3.920 22 N -0.430 5.430 23 C 0.087 3.913 24 C 0.243 3.757 25 N -0.450 5.450 26 C 0.048 3.952 27 C -0.126 4.126 28 C -0.125 4.125 29 C 0.046 3.954 30 N -0.454 5.454 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.375 0.625 37 H 0.249 0.751 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.191 0.809 41 H 0.210 0.790 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.103 0.897 48 H 0.044 0.956 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 2.950 -14.386 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.032 3.968 3 H 0.111 0.889 4 C -0.163 4.163 5 C 0.049 3.951 6 H 0.085 0.915 7 N -0.359 5.359 8 C -0.359 4.359 9 H 0.094 0.906 10 C -0.253 4.253 11 N -0.617 5.617 12 Si 0.783 3.217 13 H -0.189 1.189 14 H -0.228 1.228 15 H -0.218 1.218 16 C -0.010 4.010 17 N -0.322 5.322 18 C 0.369 3.631 19 O -0.430 6.430 20 C -0.101 4.101 21 C -0.079 4.079 22 N -0.143 5.143 23 C -0.079 4.079 24 C 0.005 3.995 25 N -0.170 5.170 26 C -0.079 4.079 27 C -0.165 4.165 28 C -0.163 4.163 29 C -0.079 4.079 30 N -0.176 5.176 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.207 0.793 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.208 0.792 41 H 0.227 0.773 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.121 0.879 48 H 0.063 0.937 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.575 3.489 -14.923 15.540 hybrid contribution 0.355 -0.888 1.205 1.538 sum -2.220 2.601 -13.718 14.138 Atomic orbital electron populations 1.22035 0.93121 1.01954 1.03714 1.22173 0.95675 0.95764 0.83197 0.88910 1.23062 0.95576 1.00390 0.97265 1.21458 0.94752 0.89451 0.89397 0.91479 1.42459 1.05114 1.24996 1.63354 1.19511 0.84917 1.04469 1.27013 0.90645 1.25319 1.00557 0.98112 1.01345 1.69803 1.33880 1.15936 1.42074 0.85372 0.81535 0.77989 0.76793 1.18862 1.22843 1.21782 1.22921 0.85100 0.95517 0.97426 1.48620 1.28091 1.46796 1.08739 1.17523 0.83251 0.81077 0.81274 1.90706 1.25379 1.44902 1.82053 1.21986 0.94001 0.98434 0.95724 1.23736 1.00205 0.96182 0.87729 1.68630 1.08457 1.04789 1.32377 1.24107 0.91646 0.96453 0.95685 1.21502 0.90690 0.95626 0.91657 1.62222 1.21011 1.07369 1.26369 1.23133 0.98637 0.99377 0.86737 1.22488 0.99453 0.94056 1.00464 1.22409 0.98894 0.97774 0.97250 1.23099 0.98833 0.83198 1.02795 1.68685 1.08469 1.07175 1.33317 0.89532 0.91053 0.94058 0.91507 0.88016 0.79254 0.94209 0.92551 0.92638 0.79198 0.77332 0.90689 0.92414 0.92369 0.89406 0.92152 0.87883 0.93732 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 8.60 71.98 0.62 -3.30 16 2 C 0.13 3.75 3.78 45.41 0.17 3.92 16 3 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.12 -3.72 6.11 31.99 0.20 -3.52 16 5 C 0.16 5.83 3.59 46.18 0.17 5.99 16 6 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 7 N -0.72 -33.16 5.17 -317.34 -1.64 -34.80 16 8 C -0.23 -11.47 9.98 84.03 0.84 -10.63 16 9 H 0.08 3.69 7.83 -2.92 -0.02 3.67 16 10 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 11 N -0.97 -55.64 13.06 21.65 0.28 -55.36 16 12 Si 0.95 43.07 29.55 68.60 2.03 45.09 16 13 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 14 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 15 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 16 C 0.12 4.11 4.65 86.73 0.40 4.51 16 17 N -0.59 -19.11 3.25 -790.44 -2.57 -21.68 16 18 C 0.58 19.14 7.63 86.87 0.66 19.80 16 19 O -0.55 -18.90 14.08 -3.79 -0.05 -18.95 16 20 C 0.04 1.20 6.71 41.82 0.28 1.48 16 21 C 0.08 2.10 10.76 84.88 0.91 3.02 16 22 N -0.43 -10.43 10.48 -193.59 -2.03 -12.46 16 23 C 0.09 1.89 10.72 85.03 0.91 2.81 16 24 C 0.24 6.43 6.01 133.22 0.80 7.23 16 25 N -0.45 -11.15 5.29 -688.86 -3.65 -14.79 16 26 C 0.05 1.46 6.01 86.65 0.52 1.98 16 27 C -0.13 -3.50 7.06 31.80 0.22 -3.27 16 28 C -0.13 -2.75 6.93 31.48 0.22 -2.53 16 29 C 0.05 0.91 6.29 86.45 0.54 1.46 16 30 N -0.45 -14.10 5.23 -181.79 -0.95 -15.05 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 2.03 6.11 -2.39 -0.01 2.02 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 2.16 7.92 -2.38 -0.02 2.14 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.63 16 36 H 0.37 18.91 7.71 -92.71 -0.72 18.19 16 37 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.06 2.06 7.55 -2.39 -0.02 2.04 16 39 H 0.06 2.26 6.03 -2.39 -0.01 2.25 16 40 H 0.19 4.46 7.64 -2.91 -0.02 4.44 16 41 H 0.21 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.06 2.13 5.29 -2.39 -0.01 2.12 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 46 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.04 0.97 7.75 -2.39 -0.02 0.95 16 49 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -62.11 387.50 -0.39 -62.50 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: 0.26 Total: 39.33 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 7.94 Total: 26.18 kcal Atomic # 7 Polarization: -143.59 SS G_CDS: -10.55 Total: -154.15 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -62.11 -0.39 -62.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989521176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.624 kcal (2) G-P(sol) polarization free energy of solvation -62.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds