Wall clock time and date at job start Wed Apr 1 2020 03:53:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09005 * 110.00320 * 2 1
4 4 C 1.54326 * 109.88189 * 238.90165 * 2 1 3
5 5 C 1.55163 * 102.94306 * 262.77694 * 4 2 1
6 6 H 1.08991 * 111.00078 * 82.60728 * 5 4 2
7 7 N 1.46498 * 111.00336 * 206.42342 * 5 4 2
8 8 C 1.36930 * 119.99831 * 204.99714 * 7 5 4
9 9 H 1.08004 * 120.00061 * 0.02562 * 8 7 5
10 10 C 1.38812 * 120.00187 * 179.97438 * 8 7 5
11 11 N 1.31627 * 119.99674 * 0.02562 * 10 8 7
12 12 Si 1.86800 * 120.00299 * 180.02562 * 10 8 7
13 13 H 1.48493 * 109.47152 * 90.00239 * 12 10 8
14 14 H 1.48501 * 109.47233 * 209.99931 * 12 10 8
15 15 H 1.48495 * 109.46877 * 330.00080 * 12 10 8
16 16 C 1.55133 * 101.48499 * 324.33060 * 5 4 2
17 17 N 1.47029 * 109.88445 * 121.09427 * 2 1 3
18 18 C 1.34776 * 125.64343 * 300.44284 * 17 2 1
19 19 O 1.21551 * 120.00329 * 359.97438 * 18 17 2
20 20 C 1.47866 * 119.99264 * 179.97438 * 18 17 2
21 21 C 1.40075 * 120.09072 * 179.97438 * 20 18 17
22 22 C 1.38278 * 117.99188 * 180.02562 * 21 20 18
23 23 C 1.39609 * 118.02972 * 0.02562 * 22 21 20
24 24 N 1.38498 * 120.04826 * 180.02562 * 23 22 21
25 25 C 1.48529 * 111.00132 * 62.57924 * 24 23 22
26 26 C 1.54937 * 103.22598 * 159.72076 * 25 24 23
27 27 C 1.54588 * 102.92452 * 322.58711 * 26 25 24
28 28 C 1.47904 * 110.99991 * 179.97438 * 24 23 22
29 29 N 1.32850 * 119.90214 * 359.97438 * 23 22 21
30 30 N 1.28364 * 122.16161 * 359.97438 * 29 23 22
31 31 H 1.09000 * 109.46565 * 300.35999 * 1 2 3
32 32 H 1.08999 * 109.46720 * 60.35794 * 1 2 3
33 33 H 1.09000 * 109.47240 * 180.35969 * 1 2 3
34 34 H 1.08993 * 110.71774 * 21.13951 * 4 2 1
35 35 H 1.09002 * 110.71887 * 144.41189 * 4 2 1
36 36 H 0.96998 * 119.99880 * 24.99852 * 7 5 4
37 37 H 0.97001 * 119.99547 * 180.02562 * 11 10 8
38 38 H 1.08995 * 110.49934 * 278.45522 * 16 5 4
39 39 H 1.08991 * 110.34186 * 156.05728 * 16 5 4
40 40 H 1.08003 * 121.00073 * 359.97438 * 21 20 18
41 41 H 1.08004 * 120.98759 * 180.02562 * 22 21 20
42 42 H 1.09001 * 110.66828 * 278.15354 * 25 24 23
43 43 H 1.08995 * 110.67018 * 41.28656 * 25 24 23
44 44 H 1.09003 * 110.72299 * 204.22799 * 26 25 24
45 45 H 1.09009 * 110.72536 * 80.94784 * 26 25 24
46 46 H 1.08998 * 110.31081 * 263.04143 * 27 26 25
47 47 H 1.08997 * 110.31687 * 140.87213 * 27 26 25
48 48 H 1.09001 * 109.91064 * 333.50447 * 28 24 23
49 49 H 1.09001 * 109.91881 * 94.80011 * 28 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9029 1.0243 0.0000
4 6 2.0548 -0.7496 -1.2427
5 6 2.3518 -2.1696 -0.6923
6 1 1.4453 -2.7738 -0.6609
7 7 3.3936 -2.8314 -1.4816
8 6 3.4567 -4.1986 -1.5226
9 1 2.7382 -4.7891 -0.9735
10 6 4.4435 -4.8257 -2.2709
11 7 5.3188 -4.1060 -2.9405
12 14 4.5292 -6.6909 -2.3275
13 1 3.7040 -7.1903 -3.4565
14 1 5.9391 -7.1161 -2.5190
15 1 4.0127 -7.2490 -1.0520
16 6 2.8613 -1.8466 0.7369
17 7 2.0301 -0.7141 1.1840
18 6 1.7753 -0.3844 2.4657
19 8 1.0776 0.5783 2.7186
20 6 2.3447 -1.1939 3.5643
21 6 2.0817 -0.8528 4.8972
22 6 2.6366 -1.6393 5.8900
23 6 3.4251 -2.7245 5.5034
24 7 4.0009 -3.5403 6.4632
25 6 2.9611 -4.2182 7.2788
26 6 3.7191 -5.4242 7.8883
27 6 4.6534 -5.8628 6.7374
28 6 4.7897 -4.6224 5.8351
29 7 3.6216 -2.9742 4.2134
30 7 3.1066 -2.2458 3.2903
31 1 -0.3632 0.5194 0.8868
32 1 -0.3633 0.5083 -0.8932
33 1 -0.3634 -1.0276 0.0065
34 1 1.2918 -0.7891 -2.0200
35 1 2.9656 -0.2832 -1.6182
36 1 4.0387 -2.3010 -1.9750
37 1 6.0082 -4.5443 -3.4636
38 1 3.9123 -1.5589 0.7115
39 1 2.7178 -2.7048 1.3933
40 1 1.4649 -0.0007 5.1420
41 1 2.4650 -1.4205 6.9337
42 1 2.5962 -3.5564 8.0643
43 1 2.1394 -4.5589 6.6488
44 1 3.0258 -6.2241 8.1484
45 1 4.2980 -5.1159 8.7590
46 1 4.2076 -6.6877 6.1816
47 1 5.6276 -6.1534 7.1307
48 1 4.3962 -4.8403 4.8423
49 1 5.8365 -4.3267 5.7660
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989664812.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:53:46
Heat of formation + Delta-G solvation = 47.466039 kcal
Electronic energy + Delta-G solvation = -30670.121812 eV
Core-core repulsion = 26632.937543 eV
Total energy + Delta-G solvation = -4037.184268 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.58068 -41.19472 -39.77600 -38.79361 -36.01306 -34.81066 -34.27800 -33.29022
-32.79727 -30.71619 -30.09071 -29.98506 -26.88284 -26.32376 -25.73805 -25.51644
-23.55619 -22.49234 -21.85208 -21.76241 -20.66886 -19.32707 -18.97281 -18.65718
-18.10879 -17.30125 -16.96515 -16.90139 -16.50027 -16.09275 -15.66142 -15.42881
-15.22256 -15.10975 -14.79600 -14.70863 -14.45983 -14.41909 -14.16122 -13.86343
-13.72233 -13.33251 -13.21777 -13.10046 -13.00426 -12.90094 -12.78096 -12.33209
-12.26118 -12.18411 -12.06971 -11.93467 -11.69653 -11.64163 -11.51555 -11.45662
-11.37112 -11.22906 -10.91973 -10.70869 -9.81251 -9.60527 -9.03415 -7.94042
-5.23362 -0.67602 -0.31407 1.44940 1.48210 1.49620 1.57920 1.74852
2.24500 2.49851 2.56923 2.83413 3.19294 3.37068 3.42094 3.52425
3.64184 3.73663 3.82348 3.85667 3.88436 3.99277 4.06956 4.11754
4.24551 4.33690 4.37041 4.46458 4.46828 4.50574 4.61184 4.66194
4.73167 4.82803 4.83694 4.92664 4.93892 4.99566 5.02036 5.05948
5.11438 5.17590 5.21391 5.26155 5.35915 5.44085 5.52633 5.54088
5.72070 6.26882 6.35436 6.85749 7.34691 7.45075 8.05502 8.30611
9.29010
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.007516 B = 0.003907 C = 0.002672
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3724.432064 B = 7165.193997 C =10478.409088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.136 3.864
3 H 0.081 0.919
4 C -0.126 4.126
5 C 0.166 3.834
6 H 0.064 0.936
7 N -0.721 5.721
8 C -0.241 4.241
9 H 0.074 0.926
10 C -0.068 4.068
11 N -0.966 5.966
12 Si 0.968 3.032
13 H -0.285 1.285
14 H -0.296 1.296
15 H -0.273 1.273
16 C 0.094 3.906
17 N -0.589 5.589
18 C 0.586 3.414
19 O -0.556 6.556
20 C -0.016 4.016
21 C -0.043 4.043
22 C -0.115 4.115
23 C 0.254 3.746
24 N -0.454 5.454
25 C 0.037 3.963
26 C -0.115 4.115
27 C -0.130 4.130
28 C 0.025 3.975
29 N -0.313 5.313
30 N -0.203 5.203
31 H 0.058 0.942
32 H 0.090 0.910
33 H 0.052 0.948
34 H 0.099 0.901
35 H 0.073 0.927
36 H 0.377 0.623
37 H 0.251 0.749
38 H 0.047 0.953
39 H 0.085 0.915
40 H 0.185 0.815
41 H 0.200 0.800
42 H 0.121 0.879
43 H 0.050 0.950
44 H 0.097 0.903
45 H 0.092 0.908
46 H 0.071 0.929
47 H 0.088 0.912
48 H 0.059 0.941
49 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.127 3.612 23.709 25.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.033 3.967
3 H 0.099 0.901
4 C -0.165 4.165
5 C 0.055 3.945
6 H 0.082 0.918
7 N -0.359 5.359
8 C -0.373 4.373
9 H 0.092 0.908
10 C -0.260 4.260
11 N -0.616 5.616
12 Si 0.797 3.203
13 H -0.212 1.212
14 H -0.223 1.223
15 H -0.198 1.198
16 C -0.032 4.032
17 N -0.320 5.320
18 C 0.373 3.627
19 O -0.435 6.435
20 C -0.166 4.166
21 C -0.072 4.072
22 C -0.145 4.145
23 C 0.016 3.984
24 N -0.173 5.173
25 C -0.087 4.087
26 C -0.152 4.152
27 C -0.168 4.168
28 C -0.102 4.102
29 N -0.161 5.161
30 N -0.049 5.049
31 H 0.077 0.923
32 H 0.108 0.892
33 H 0.071 0.929
34 H 0.117 0.883
35 H 0.092 0.908
36 H 0.210 0.790
37 H 0.060 0.940
38 H 0.065 0.935
39 H 0.103 0.897
40 H 0.203 0.797
41 H 0.217 0.783
42 H 0.139 0.861
43 H 0.069 0.931
44 H 0.116 0.884
45 H 0.111 0.889
46 H 0.090 0.910
47 H 0.107 0.893
48 H 0.077 0.923
49 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -7.499 3.281 23.128 24.534
hybrid contribution 0.001 -0.327 -0.198 0.382
sum -7.498 2.954 22.930 24.305
Atomic orbital electron populations
1.22072 0.93245 1.02305 1.03393 1.21719 0.95706 0.95947 0.83306
0.90063 1.22962 1.02248 0.94824 0.96461 1.21525 0.91354 0.92653
0.88962 0.91791 1.42391 1.34286 1.03321 1.55938 1.19579 1.10464
0.83952 1.23319 0.90798 1.25478 0.98149 1.01931 1.00465 1.69807
1.19908 1.35510 1.36424 0.85223 0.76378 0.80768 0.77914 1.21151
1.22254 1.19783 1.23391 0.93292 0.88165 0.98324 1.48511 1.48480
1.30288 1.04738 1.17322 0.80451 0.83587 0.81335 1.90727 1.40231
1.28977 1.83529 1.22761 1.00578 0.97609 0.95631 1.22512 0.95569
0.99310 0.89792 1.22311 0.96130 0.92665 1.03414 1.22117 0.90511
0.94970 0.90820 1.61808 1.19613 1.18898 1.16939 1.23605 0.91921
0.96624 0.96571 1.22544 0.98245 0.96538 0.97910 1.22454 1.01951
0.95939 0.96492 1.22994 0.98675 0.90274 0.98246 1.73379 1.20674
1.22784 0.99232 1.73419 1.03526 1.01782 1.26125 0.92259 0.89173
0.92886 0.88288 0.90789 0.79026 0.93981 0.93461 0.89724 0.79740
0.78264 0.86070 0.93136 0.88450 0.88931 0.91004 0.89304 0.92308
0.90269
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.93 9.06 71.98 0.65 -3.28 16
2 C 0.14 4.03 3.49 45.34 0.16 4.19 16
3 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16
4 C -0.13 -4.02 6.14 31.79 0.20 -3.82 16
5 C 0.17 6.62 3.73 46.46 0.17 6.79 16
6 H 0.06 2.59 8.09 -2.39 -0.02 2.57 16
7 N -0.72 -36.09 5.24 -316.01 -1.66 -37.74 16
8 C -0.24 -13.38 9.96 84.03 0.84 -12.55 16
9 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16
10 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16
11 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16
12 Si 0.97 46.36 29.55 68.60 2.03 48.39 16
13 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16
14 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16
15 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16
16 C 0.09 3.68 5.66 86.93 0.49 4.18 16
17 N -0.59 -20.07 3.08 -790.95 -2.44 -22.50 16
18 C 0.59 19.63 7.62 86.79 0.66 20.29 16
19 O -0.56 -19.14 15.28 -3.88 -0.06 -19.20 16
20 C -0.02 -0.50 6.80 42.00 0.29 -0.21 16
21 C -0.04 -0.95 9.71 22.73 0.22 -0.73 16
22 C -0.11 -2.06 9.56 22.61 0.22 -1.84 16
23 C 0.25 6.11 6.27 133.22 0.84 6.95 16
24 N -0.45 -8.79 5.29 -688.99 -3.65 -12.43 16
25 C 0.04 0.45 6.06 86.65 0.53 0.98 16
26 C -0.11 -1.09 7.06 31.80 0.22 -0.86 16
27 C -0.13 -1.84 6.93 31.47 0.22 -1.62 16
28 C 0.03 0.54 6.35 86.44 0.55 1.09 16
29 N -0.31 -10.16 9.32 -55.17 -0.51 -10.67 16
30 N -0.20 -7.13 7.79 -48.50 -0.38 -7.51 16
31 H 0.06 1.64 6.74 -2.39 -0.02 1.63 16
32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16
34 H 0.10 2.80 7.83 -2.39 -0.02 2.78 16
35 H 0.07 2.41 8.00 -2.39 -0.02 2.39 16
36 H 0.38 20.14 7.76 -92.71 -0.72 19.42 16
37 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16
38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
39 H 0.08 3.55 5.88 -2.39 -0.01 3.54 16
40 H 0.19 3.14 7.71 -2.91 -0.02 3.12 16
41 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16
42 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16
43 H 0.05 0.72 7.99 -2.39 -0.02 0.71 16
44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16
45 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16
46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
47 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16
48 H 0.06 1.62 6.50 -2.39 -0.02 1.61 16
49 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
Total: -1.00 -71.72 391.97 0.58 -71.14
By element:
Atomic # 1 Polarization: 32.73 SS G_CDS: 0.25 Total: 32.98 kcal
Atomic # 6 Polarization: 9.43 SS G_CDS: 6.71 Total: 16.14 kcal
Atomic # 7 Polarization: -141.11 SS G_CDS: -8.35 Total: -149.46 kcal
Atomic # 8 Polarization: -19.14 SS G_CDS: -0.06 Total: -19.20 kcal
Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal
Total: -71.72 0.58 -71.14 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989664812.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.611 kcal
(2) G-P(sol) polarization free energy of solvation -71.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.466 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds