Wall clock time and date at job start Wed Apr 1 2020 03:53:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.08999 * 110.41931 * 2 1
4 4 C 1.54918 * 110.36961 * 237.70876 * 2 1 3
5 5 C 1.55157 * 101.58155 * 204.15332 * 4 2 1
6 6 H 1.08993 * 110.71794 * 277.13272 * 5 4 2
7 7 N 1.46501 * 110.71608 * 154.03875 * 5 4 2
8 8 C 1.36944 * 119.99454 * 154.99586 * 7 5 4
9 9 H 1.07997 * 120.00089 * 0.02562 * 8 7 5
10 10 C 1.38814 * 119.99535 * 179.97438 * 8 7 5
11 11 N 1.31621 * 120.00268 * 0.02562 * 10 8 7
12 12 Si 1.86798 * 119.99890 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.47028 * 90.00211 * 12 10 8
14 14 H 1.48493 * 109.47612 * 210.00426 * 12 10 8
15 15 H 1.48507 * 109.47288 * 330.00609 * 12 10 8
16 16 C 1.54325 * 102.94374 * 35.49936 * 5 4 2
17 17 N 1.47015 * 107.27065 * 337.80787 * 16 5 4
18 18 C 1.34778 * 125.64845 * 178.98781 * 17 16 5
19 19 O 1.21555 * 120.00257 * 179.97438 * 18 17 16
20 20 C 1.47862 * 119.99931 * 359.97438 * 18 17 16
21 21 C 1.40070 * 120.09593 * 179.73107 * 20 18 17
22 22 C 1.38292 * 117.99163 * 179.73626 * 21 20 18
23 23 C 1.39603 * 118.02665 * 0.51725 * 22 21 20
24 24 N 1.38509 * 120.04707 * 179.70775 * 23 22 21
25 25 C 1.48529 * 110.99715 * 62.62477 * 24 23 22
26 26 C 1.54944 * 103.22410 * 159.72107 * 25 24 23
27 27 C 1.54603 * 102.91927 * 322.58923 * 26 25 24
28 28 C 1.47897 * 110.99953 * 180.02562 * 24 23 22
29 29 N 1.32853 * 119.90336 * 359.73626 * 23 22 21
30 30 N 1.28353 * 122.16407 * 359.97438 * 29 23 22
31 31 H 1.09007 * 109.47404 * 182.28902 * 1 2 3
32 32 H 1.08998 * 109.47268 * 302.29379 * 1 2 3
33 33 H 1.09004 * 109.47314 * 62.29154 * 1 2 3
34 34 H 1.09001 * 111.00522 * 86.07391 * 4 2 1
35 35 H 1.09000 * 110.99891 * 322.22420 * 4 2 1
36 36 H 0.96997 * 120.00407 * 335.00448 * 7 5 4
37 37 H 0.96993 * 119.99849 * 179.97438 * 11 10 8
38 38 H 1.09000 * 109.88274 * 97.22627 * 16 5 4
39 39 H 1.08997 * 109.87805 * 218.23167 * 16 5 4
40 40 H 1.08002 * 121.00414 * 359.97438 * 21 20 18
41 41 H 1.07999 * 120.98533 * 180.26839 * 22 21 20
42 42 H 1.08998 * 110.67326 * 278.15577 * 25 24 23
43 43 H 1.09000 * 110.66534 * 41.29411 * 25 24 23
44 44 H 1.08996 * 110.72413 * 204.23315 * 26 25 24
45 45 H 1.08993 * 110.72140 * 80.94648 * 26 25 24
46 46 H 1.09003 * 110.30436 * 263.04002 * 27 26 25
47 47 H 1.08998 * 110.30321 * 140.87534 * 27 26 25
48 48 H 1.09002 * 109.91547 * 333.50842 * 28 24 23
49 49 H 1.08996 * 109.92103 * 94.80164 * 28 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9102 1.0215 0.0000
4 6 2.0692 -0.7759 -1.2277
5 6 3.4778 -1.1997 -0.7342
6 1 4.1944 -0.3902 -0.8722
7 7 3.9267 -2.4105 -1.4261
8 6 5.2652 -2.6722 -1.5493
9 1 5.9898 -1.9863 -1.1359
10 6 5.6906 -3.8197 -2.2044
11 7 4.8074 -4.6559 -2.7077
12 14 7.5164 -4.1765 -2.3730
13 1 7.9751 -4.9721 -1.2061
14 1 7.7577 -4.9440 -3.6211
15 1 8.2680 -2.8967 -2.4258
16 6 3.2493 -1.4769 0.7667
17 7 2.0431 -0.7385 1.1682
18 6 1.4973 -0.7363 2.4005
19 8 0.4943 -0.0856 2.6199
20 6 2.1186 -1.5254 3.4857
21 6 1.5563 -1.5201 4.7686
22 6 2.1697 -2.2780 5.7493
23 6 3.3178 -2.9930 5.4036
24 7 3.9692 -3.7609 6.3546
25 6 3.0916 -4.8521 6.8498
26 6 4.0948 -5.8687 7.4506
27 6 5.2894 -5.7952 6.4719
28 6 5.1550 -4.4285 5.7753
29 7 3.7849 -2.9354 4.1612
30 7 3.2138 -2.2371 3.2482
31 1 -0.3634 -1.0269 0.0410
32 1 -0.3634 0.5490 0.8687
33 1 -0.3634 0.4778 -0.9098
34 1 2.1398 -0.1263 -2.1002
35 1 1.4511 -1.6480 -1.4409
36 1 3.2759 -3.0267 -1.7971
37 1 5.1047 -5.4575 -3.1658
38 1 3.1013 -2.5446 0.9282
39 1 4.1076 -1.1306 1.3423
40 1 0.6682 -0.9446 4.9843
41 1 1.7747 -2.3124 6.7538
42 1 2.4130 -4.4814 7.6180
43 1 2.5350 -5.3012 6.0273
44 1 3.6673 -6.8712 7.4627
45 1 4.3979 -5.5652 8.4526
46 1 5.2287 -6.6005 5.7398
47 1 6.2305 -5.8502 7.0190
48 1 5.0148 -4.5701 4.7036
49 1 6.0461 -3.8285 5.9598
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989664813.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:53:52
Heat of formation + Delta-G solvation = 68.154801 kcal
Electronic energy + Delta-G solvation = -30692.179675 eV
Core-core repulsion = 26655.892538 eV
Total energy + Delta-G solvation = -4036.287136 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.52125 -39.95774 -38.84414 -37.32887 -34.17579 -33.85892 -33.25001 -31.75103
-31.31932 -29.71931 -29.36480 -28.36299 -25.58699 -24.93563 -24.65675 -23.76430
-22.29209 -21.53101 -21.13338 -20.21190 -19.56516 -17.81149 -17.75088 -17.18381
-16.77307 -16.39154 -16.09093 -15.54685 -15.05070 -14.62593 -14.51909 -14.37016
-14.00774 -13.78610 -13.62234 -13.38950 -13.25549 -13.22283 -12.94475 -12.60022
-12.53669 -12.13501 -11.92909 -11.84205 -11.72029 -11.64855 -11.45078 -11.20183
-10.94815 -10.87505 -10.71591 -10.64641 -10.56748 -10.37655 -10.24489 -9.99731
-9.76649 -9.69549 -9.62599 -8.92327 -8.73550 -8.29359 -7.01930 -5.78359
-3.08294 0.39143 0.66787 2.64130 3.00435 3.21172 3.44702 3.50077
3.51092 3.62802 3.90429 4.14346 4.25207 4.43370 4.47655 4.56208
4.59871 4.74161 4.80057 4.96252 5.05602 5.08770 5.18314 5.24486
5.26568 5.32576 5.46235 5.50194 5.52163 5.56958 5.62105 5.64790
5.71202 5.79256 5.85993 5.90075 5.92252 5.97400 6.17354 6.20866
6.27446 6.38678 6.44249 6.53055 6.61547 6.71109 6.72502 6.99569
7.69801 7.75753 8.19600 8.39235 8.55075 9.51226 10.05032 10.40035
11.43904
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.007352 B = 0.003975 C = 0.002686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3807.702668 B = 7042.637690 C =10420.207375
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.135 3.865
3 H 0.076 0.924
4 C -0.138 4.138
5 C 0.169 3.831
6 H 0.067 0.933
7 N -0.711 5.711
8 C -0.243 4.243
9 H 0.073 0.927
10 C -0.009 4.009
11 N -0.931 5.931
12 Si 0.907 3.093
13 H -0.289 1.289
14 H -0.292 1.292
15 H -0.281 1.281
16 C 0.085 3.915
17 N -0.586 5.586
18 C 0.587 3.413
19 O -0.546 6.546
20 C 0.003 3.997
21 C -0.047 4.047
22 C -0.137 4.137
23 C 0.257 3.743
24 N -0.456 5.456
25 C 0.041 3.959
26 C -0.122 4.122
27 C -0.133 4.133
28 C 0.029 3.971
29 N -0.275 5.275
30 N -0.166 5.166
31 H 0.054 0.946
32 H 0.080 0.920
33 H 0.060 0.940
34 H 0.081 0.919
35 H 0.076 0.924
36 H 0.386 0.614
37 H 0.255 0.745
38 H 0.082 0.918
39 H 0.067 0.933
40 H 0.162 0.838
41 H 0.155 0.845
42 H 0.092 0.908
43 H 0.059 0.941
44 H 0.079 0.921
45 H 0.079 0.921
46 H 0.074 0.926
47 H 0.077 0.923
48 H 0.088 0.912
49 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.703 2.654 19.685 20.964
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.032 3.968
3 H 0.094 0.906
4 C -0.177 4.177
5 C 0.056 3.944
6 H 0.085 0.915
7 N -0.350 5.350
8 C -0.374 4.374
9 H 0.091 0.909
10 C -0.205 4.205
11 N -0.579 5.579
12 Si 0.738 3.262
13 H -0.216 1.216
14 H -0.218 1.218
15 H -0.207 1.207
16 C -0.041 4.041
17 N -0.317 5.317
18 C 0.373 3.627
19 O -0.424 6.424
20 C -0.146 4.146
21 C -0.076 4.076
22 C -0.168 4.168
23 C 0.019 3.981
24 N -0.175 5.175
25 C -0.084 4.084
26 C -0.161 4.161
27 C -0.171 4.171
28 C -0.097 4.097
29 N -0.124 5.124
30 N -0.013 5.013
31 H 0.073 0.927
32 H 0.099 0.901
33 H 0.079 0.921
34 H 0.100 0.900
35 H 0.095 0.905
36 H 0.221 0.779
37 H 0.065 0.935
38 H 0.101 0.899
39 H 0.085 0.915
40 H 0.180 0.820
41 H 0.173 0.827
42 H 0.111 0.889
43 H 0.077 0.923
44 H 0.098 0.902
45 H 0.097 0.903
46 H 0.093 0.907
47 H 0.095 0.905
48 H 0.107 0.893
49 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -5.728 2.813 19.172 20.206
hybrid contribution -0.280 -0.515 0.387 0.703
sum -6.008 2.298 19.559 20.590
Atomic orbital electron populations
1.22133 0.94177 1.02695 1.02814 1.21962 0.94850 0.95452 0.84511
0.90561 1.23197 0.98163 1.00291 0.96042 1.21261 0.92987 0.91157
0.88979 0.91493 1.42349 1.05244 1.22521 1.64907 1.19267 0.83325
1.04638 1.30162 0.90936 1.24735 0.97584 0.97345 1.00843 1.69662
1.32219 1.13577 1.42468 0.86198 0.85036 0.77903 0.77100 1.21626
1.21829 1.20671 1.23460 0.84685 0.97176 0.98768 1.48523 1.28487
1.46631 1.08043 1.17091 0.83380 0.81185 0.81060 1.90714 1.25175
1.44540 1.81969 1.22764 0.95951 1.00642 0.95199 1.22264 0.99306
0.94852 0.91201 1.21880 0.95787 0.97650 1.01470 1.21747 0.91098
0.94869 0.90372 1.61706 1.06914 1.20334 1.28539 1.23388 0.95432
0.89899 0.99720 1.22513 0.95245 0.98740 0.99560 1.22460 0.99168
0.96919 0.98572 1.23018 0.92238 0.94101 1.00378 1.73464 1.26350
1.15118 0.97444 1.73539 1.04353 1.00124 1.23238 0.92725 0.90120
0.92121 0.90047 0.90503 0.77930 0.93470 0.89944 0.91460 0.82022
0.82745 0.88941 0.92277 0.90209 0.90258 0.90728 0.90465 0.89329
0.89419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.24 8.59 37.15 0.32 -1.93 16
2 C 0.13 2.04 3.77 -66.42 -0.25 1.79 16
3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
4 C -0.14 -2.23 6.13 -24.58 -0.15 -2.38 16
5 C 0.17 3.29 3.61 -66.09 -0.24 3.05 16
6 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16
7 N -0.71 -17.36 5.16 -51.65 -0.27 -17.63 16
8 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16
9 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16
10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16
11 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16
12 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16
13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
16 C 0.08 1.59 5.16 -3.07 -0.02 1.58 16
17 N -0.59 -9.91 3.24 -164.15 -0.53 -10.45 16
18 C 0.59 9.88 7.61 -12.32 -0.09 9.79 16
19 O -0.55 -9.52 14.10 5.32 0.07 -9.44 16
20 C 0.00 0.05 6.80 -82.84 -0.56 -0.52 16
21 C -0.05 -0.57 9.71 -38.87 -0.38 -0.95 16
22 C -0.14 -1.45 9.57 -39.05 -0.37 -1.82 16
23 C 0.26 3.28 6.27 -154.94 -0.97 2.31 16
24 N -0.46 -4.87 5.29 -169.13 -0.89 -5.77 16
25 C 0.04 0.33 6.06 -1.90 -0.01 0.31 16
26 C -0.12 -0.81 7.06 -24.86 -0.18 -0.98 16
27 C -0.13 -1.07 6.93 -25.37 -0.18 -1.25 16
28 C 0.03 0.32 6.35 -2.76 -0.02 0.30 16
29 N -0.28 -4.42 9.32 31.21 0.29 -4.13 16
30 N -0.17 -2.86 8.06 33.32 0.27 -2.60 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.08 1.21 6.09 -51.93 -0.32 0.89 16
33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
35 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16
36 H 0.39 10.07 7.76 -40.82 -0.32 9.75 16
37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
38 H 0.08 1.76 7.31 -51.93 -0.38 1.38 16
39 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16
40 H 0.16 1.63 7.71 -52.49 -0.40 1.22 16
41 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16
42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
43 H 0.06 0.52 7.99 -51.93 -0.42 0.10 16
44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
47 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
48 H 0.09 1.19 6.50 -51.93 -0.34 0.85 16
49 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
LS Contribution 390.73 15.07 5.89 5.89
Total: -1.00 -31.93 390.73 -10.40 -42.33
By element:
Atomic # 1 Polarization: 17.00 SS G_CDS: -7.59 Total: 9.41 kcal
Atomic # 6 Polarization: 5.54 SS G_CDS: -3.34 Total: 2.20 kcal
Atomic # 7 Polarization: -67.18 SS G_CDS: -0.41 Total: -67.59 kcal
Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.44 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -31.93 -10.40 -42.33 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989664813.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.484 kcal
(2) G-P(sol) polarization free energy of solvation -31.928 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.556 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.155 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds