Wall clock time and date at job start Wed Apr 1 2020 03:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99401 * 2 1 4 4 C 1.54316 * 109.88437 * 121.09726 * 2 1 3 5 5 C 1.55154 * 102.94339 * 97.22532 * 4 2 1 6 6 H 1.08997 * 111.00403 * 277.39148 * 5 4 2 7 7 N 1.46506 * 111.00346 * 153.57490 * 5 4 2 8 8 C 1.36938 * 119.99629 * 155.00077 * 7 5 4 9 9 H 1.07998 * 120.00011 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99969 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99451 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00030 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47045 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46902 * 120.00024 * 12 10 8 15 15 H 1.48500 * 109.46833 * 239.99922 * 12 10 8 16 16 C 1.54910 * 101.58203 * 35.50433 * 5 4 2 17 17 N 1.47023 * 109.88335 * 238.91181 * 2 1 3 18 18 C 1.34768 * 125.65460 * 59.56241 * 17 2 1 19 19 O 1.21555 * 119.99827 * 0.02562 * 18 17 2 20 20 C 1.47858 * 120.00463 * 180.02562 * 18 17 2 21 21 C 1.40065 * 120.09897 * 180.02562 * 20 18 17 22 22 C 1.38286 * 117.99485 * 180.02562 * 21 20 18 23 23 C 1.39600 * 118.02769 * 359.97438 * 22 21 20 24 24 N 1.38505 * 120.04666 * 180.02562 * 23 22 21 25 25 C 1.48535 * 111.00183 * 62.60169 * 24 23 22 26 26 C 1.54933 * 103.22815 * 159.71740 * 25 24 23 27 27 C 1.54590 * 102.92473 * 322.58788 * 26 25 24 28 28 C 1.47904 * 110.99849 * 179.97438 * 24 23 22 29 29 N 1.32860 * 119.90447 * 359.97438 * 23 22 21 30 30 N 1.28360 * 122.15545 * 359.71018 * 29 23 22 31 31 H 1.08999 * 109.47140 * 298.90087 * 1 2 3 32 32 H 1.09008 * 109.47023 * 58.90446 * 1 2 3 33 33 H 1.08998 * 109.46705 * 178.89885 * 1 2 3 34 34 H 1.09002 * 110.71968 * 338.85939 * 4 2 1 35 35 H 1.09005 * 110.72064 * 215.59126 * 4 2 1 36 36 H 0.96995 * 119.99814 * 335.00058 * 7 5 4 37 37 H 0.97000 * 119.99482 * 180.02562 * 11 10 8 38 38 H 1.09006 * 110.36732 * 81.82495 * 16 5 4 39 39 H 1.08995 * 110.37006 * 204.15562 * 16 5 4 40 40 H 1.07999 * 121.00352 * 359.97397 * 21 20 18 41 41 H 1.08003 * 120.98678 * 180.02562 * 22 21 20 42 42 H 1.09002 * 110.66580 * 278.15852 * 25 24 23 43 43 H 1.08999 * 110.66576 * 41.28331 * 25 24 23 44 44 H 1.08996 * 110.72607 * 204.22573 * 26 25 24 45 45 H 1.09004 * 110.72033 * 80.94813 * 26 25 24 46 46 H 1.09000 * 110.30998 * 263.03900 * 27 26 25 47 47 H 1.09003 * 110.31185 * 140.87134 * 27 26 25 48 48 H 1.08994 * 109.91750 * 333.50591 * 28 24 23 49 49 H 1.09003 * 109.91361 * 94.80263 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 2.3519 -2.1694 0.6923 6 1 1.4454 -2.7738 0.6609 7 7 3.3938 -2.8311 1.4815 8 6 3.4570 -4.1985 1.5226 9 1 2.7390 -4.7889 0.9729 10 6 4.4438 -4.8255 2.2708 11 7 5.3185 -4.1058 2.9411 12 14 4.5304 -6.6907 2.3263 13 1 3.4419 -7.2617 1.4932 14 1 5.8441 -7.1411 1.8002 15 1 4.3746 -7.1518 3.7293 16 6 2.8569 -1.8497 -0.7369 17 7 2.0300 -0.7139 -1.1840 18 6 1.7755 -0.3842 -2.4657 19 8 1.0779 0.5785 -2.7186 20 6 2.3448 -1.1936 -3.5644 21 6 2.0820 -0.8524 -4.8972 22 6 2.6360 -1.6396 -5.8900 23 6 3.4236 -2.7255 -5.5034 24 7 3.9993 -3.5413 -6.4632 25 6 4.9569 -2.7791 -7.3049 26 6 5.8513 -3.8867 -7.9161 27 6 5.9921 -4.8975 -6.7549 28 6 4.7880 -4.6234 -5.8352 29 7 3.6208 -2.9746 -4.2133 30 7 3.1123 -2.2416 -3.2904 31 1 -0.3633 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8801 33 1 -0.3633 -1.0275 -0.0197 34 1 1.2918 -0.7890 2.0200 35 1 2.9657 -0.2831 1.6182 36 1 4.0389 -2.3007 1.9749 37 1 6.0084 -4.5439 3.4637 38 1 3.9092 -1.5665 -0.7129 39 1 2.7089 -2.7078 -1.3924 40 1 1.4647 -0.0008 -5.1421 41 1 2.4652 -1.4203 -6.9337 42 1 4.4308 -2.2334 -8.0882 43 1 5.5502 -2.0994 -6.6932 44 1 6.8246 -3.4849 -8.1978 45 1 5.3611 -4.3492 -8.7728 46 1 6.9249 -4.7283 -6.2170 47 1 5.9535 -5.9183 -7.1351 48 1 5.1361 -4.3067 -4.8521 49 1 4.1784 -5.5225 -5.7443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989664815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:00 Heat of formation + Delta-G solvation = 67.923989 kcal Electronic energy + Delta-G solvation = -30650.286434 eV Core-core repulsion = 26613.989289 eV Total energy + Delta-G solvation = -4036.297145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55629 -39.96334 -38.86763 -37.39433 -34.18381 -33.89014 -33.26781 -31.78446 -31.24459 -29.75514 -29.39054 -28.28030 -25.61029 -25.09502 -24.68306 -23.76020 -22.37098 -21.59322 -21.15329 -20.23304 -19.42097 -17.86006 -17.79738 -17.30170 -16.95158 -16.30028 -15.85539 -15.55676 -15.14575 -14.64380 -14.58007 -14.31599 -14.06541 -13.82785 -13.52566 -13.36015 -13.29619 -13.03861 -12.94735 -12.89167 -12.55719 -12.33426 -12.01728 -11.81794 -11.78579 -11.67232 -11.47701 -11.15694 -10.94510 -10.88958 -10.74247 -10.60950 -10.48776 -10.40585 -10.16661 -9.95776 -9.88778 -9.73434 -9.68415 -8.93665 -8.73786 -8.33910 -7.01174 -5.78754 -3.08494 0.36130 0.63487 2.60966 2.98778 3.18650 3.44082 3.50463 3.52324 3.59575 3.87964 4.11794 4.22754 4.40812 4.45271 4.53524 4.60034 4.71590 4.77162 4.93173 5.02345 5.06117 5.20534 5.22473 5.27022 5.29988 5.43662 5.48581 5.51934 5.54582 5.59375 5.65420 5.68820 5.71170 5.87487 5.88953 5.91415 5.96566 6.15102 6.25205 6.26626 6.31527 6.39109 6.52454 6.58934 6.64616 6.81527 6.94359 7.70574 7.74253 8.16404 8.39012 8.51352 9.51116 10.04665 10.39854 11.43574 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.007608 B = 0.003844 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3679.360460 B = 7281.643490 C =10563.372280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.171 3.829 6 H 0.066 0.934 7 N -0.710 5.710 8 C -0.242 4.242 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.292 1.292 16 C 0.073 3.927 17 N -0.585 5.585 18 C 0.586 3.414 19 O -0.547 6.547 20 C 0.005 3.995 21 C -0.047 4.047 22 C -0.136 4.136 23 C 0.257 3.743 24 N -0.456 5.456 25 C 0.041 3.959 26 C -0.123 4.123 27 C -0.133 4.133 28 C 0.029 3.971 29 N -0.276 5.276 30 N -0.168 5.168 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 6.101 -21.046 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.059 3.941 6 H 0.084 0.916 7 N -0.350 5.350 8 C -0.373 4.373 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.219 1.219 16 C -0.052 4.052 17 N -0.316 5.316 18 C 0.372 3.628 19 O -0.425 6.425 20 C -0.144 4.144 21 C -0.076 4.076 22 C -0.167 4.167 23 C 0.019 3.981 24 N -0.175 5.175 25 C -0.084 4.084 26 C -0.161 4.161 27 C -0.171 4.171 28 C -0.097 4.097 29 N -0.124 5.124 30 N -0.014 5.014 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.047 5.229 -20.415 21.293 hybrid contribution 0.238 0.188 -0.510 0.593 sum -2.809 5.416 -20.925 21.796 Atomic orbital electron populations 1.22141 0.94837 1.02460 1.02498 1.21592 0.94516 0.95969 0.84491 0.90932 1.23056 1.01718 0.97437 0.95607 1.21348 0.92868 0.91027 0.88875 0.91580 1.42300 1.33363 1.04047 1.55248 1.19306 1.11079 0.82496 1.24384 0.90919 1.24735 0.97994 0.97862 0.99948 1.69672 1.19092 1.33962 1.35174 0.86127 0.77407 0.85548 0.77185 1.20454 1.21812 1.21887 1.23869 0.94430 0.87713 0.99204 1.48511 1.48612 1.30540 1.03943 1.17088 0.80837 0.83658 0.81234 1.90748 1.39781 1.28588 1.83392 1.22744 1.00402 0.96698 0.94520 1.22260 0.95498 0.98741 0.91126 1.21886 0.98058 0.95014 1.01715 1.21738 0.94140 0.90626 0.91547 1.61701 1.29850 1.09064 1.16869 1.23385 0.92597 0.96185 0.96247 1.22512 0.99568 0.95590 0.98403 1.22455 0.98206 1.00239 0.96204 1.23020 0.93945 0.94142 0.98638 1.73468 1.17812 1.23385 0.97757 1.73544 1.02820 1.00255 1.24765 0.91743 0.91469 0.92332 0.90073 0.90527 0.77907 0.93508 0.91188 0.88499 0.81993 0.82704 0.88935 0.92321 0.90223 0.90232 0.90772 0.90433 0.89356 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.05 37.16 0.34 -1.89 16 2 C 0.14 2.10 3.49 -66.96 -0.23 1.86 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -2.25 6.14 -24.90 -0.15 -2.40 16 5 C 0.17 3.36 3.71 -65.78 -0.24 3.12 16 6 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 7 N -0.71 -17.30 5.24 -51.35 -0.27 -17.57 16 8 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 11 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 12 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 C 0.07 1.37 5.64 -2.52 -0.01 1.36 16 17 N -0.58 -9.87 3.08 -164.11 -0.51 -10.38 16 18 C 0.59 9.83 7.62 -12.33 -0.09 9.73 16 19 O -0.55 -9.67 15.29 5.32 0.08 -9.59 16 20 C 0.00 0.07 6.80 -82.85 -0.56 -0.49 16 21 C -0.05 -0.56 9.71 -38.88 -0.38 -0.93 16 22 C -0.14 -1.40 9.57 -39.06 -0.37 -1.77 16 23 C 0.26 3.20 6.27 -154.93 -0.97 2.23 16 24 N -0.46 -4.74 5.29 -169.13 -0.90 -5.63 16 25 C 0.04 0.31 6.06 -1.90 -0.01 0.30 16 26 C -0.12 -0.76 7.06 -24.88 -0.18 -0.94 16 27 C -0.13 -1.02 6.93 -25.39 -0.18 -1.19 16 28 C 0.03 0.31 6.35 -2.77 -0.02 0.29 16 29 N -0.28 -4.32 9.32 31.21 0.29 -4.03 16 30 N -0.17 -2.83 7.80 33.32 0.26 -2.57 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.99 6.77 -51.92 -0.35 0.64 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.21 7.83 -51.93 -0.41 0.80 16 35 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 36 H 0.39 9.96 7.76 -40.82 -0.32 9.64 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.10 1.94 5.90 -51.93 -0.31 1.63 16 40 H 0.16 1.60 7.71 -52.49 -0.40 1.20 16 41 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.48 7.99 -51.93 -0.42 0.06 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 1.14 6.50 -51.93 -0.34 0.80 16 49 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -31.99 392.00 -10.32 -42.30 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.57 Total: 9.05 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -3.32 Total: 2.19 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.39 Total: -67.08 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.99 -10.32 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989664815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.226 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds