Wall clock time and date at job start Wed Apr 1 2020 03:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99401 * 2 1 4 4 C 1.54316 * 109.88437 * 121.09726 * 2 1 3 5 5 C 1.55154 * 102.94339 * 97.22532 * 4 2 1 6 6 H 1.08997 * 111.00403 * 277.39148 * 5 4 2 7 7 N 1.46506 * 111.00346 * 153.57490 * 5 4 2 8 8 C 1.36938 * 119.99629 * 155.00077 * 7 5 4 9 9 H 1.07998 * 120.00011 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99969 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99451 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00030 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47045 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46902 * 120.00024 * 12 10 8 15 15 H 1.48500 * 109.46833 * 239.99922 * 12 10 8 16 16 C 1.54910 * 101.58203 * 35.50433 * 5 4 2 17 17 N 1.47023 * 109.88335 * 238.91181 * 2 1 3 18 18 C 1.34768 * 125.65460 * 59.56241 * 17 2 1 19 19 O 1.21555 * 119.99827 * 0.02562 * 18 17 2 20 20 C 1.47858 * 120.00463 * 180.02562 * 18 17 2 21 21 C 1.40065 * 120.09897 * 180.02562 * 20 18 17 22 22 C 1.38286 * 117.99485 * 180.02562 * 21 20 18 23 23 C 1.39600 * 118.02769 * 359.97438 * 22 21 20 24 24 N 1.38505 * 120.04666 * 180.02562 * 23 22 21 25 25 C 1.48535 * 111.00183 * 62.60169 * 24 23 22 26 26 C 1.54933 * 103.22815 * 159.71740 * 25 24 23 27 27 C 1.54590 * 102.92473 * 322.58788 * 26 25 24 28 28 C 1.47904 * 110.99849 * 179.97438 * 24 23 22 29 29 N 1.32860 * 119.90447 * 359.97438 * 23 22 21 30 30 N 1.28360 * 122.15545 * 359.71018 * 29 23 22 31 31 H 1.08999 * 109.47140 * 298.90087 * 1 2 3 32 32 H 1.09008 * 109.47023 * 58.90446 * 1 2 3 33 33 H 1.08998 * 109.46705 * 178.89885 * 1 2 3 34 34 H 1.09002 * 110.71968 * 338.85939 * 4 2 1 35 35 H 1.09005 * 110.72064 * 215.59126 * 4 2 1 36 36 H 0.96995 * 119.99814 * 335.00058 * 7 5 4 37 37 H 0.97000 * 119.99482 * 180.02562 * 11 10 8 38 38 H 1.09006 * 110.36732 * 81.82495 * 16 5 4 39 39 H 1.08995 * 110.37006 * 204.15562 * 16 5 4 40 40 H 1.07999 * 121.00352 * 359.97397 * 21 20 18 41 41 H 1.08003 * 120.98678 * 180.02562 * 22 21 20 42 42 H 1.09002 * 110.66580 * 278.15852 * 25 24 23 43 43 H 1.08999 * 110.66576 * 41.28331 * 25 24 23 44 44 H 1.08996 * 110.72607 * 204.22573 * 26 25 24 45 45 H 1.09004 * 110.72033 * 80.94813 * 26 25 24 46 46 H 1.09000 * 110.30998 * 263.03900 * 27 26 25 47 47 H 1.09003 * 110.31185 * 140.87134 * 27 26 25 48 48 H 1.08994 * 109.91750 * 333.50591 * 28 24 23 49 49 H 1.09003 * 109.91361 * 94.80263 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 2.3519 -2.1694 0.6923 6 1 1.4454 -2.7738 0.6609 7 7 3.3938 -2.8311 1.4815 8 6 3.4570 -4.1985 1.5226 9 1 2.7390 -4.7889 0.9729 10 6 4.4438 -4.8255 2.2708 11 7 5.3185 -4.1058 2.9411 12 14 4.5304 -6.6907 2.3263 13 1 3.4419 -7.2617 1.4932 14 1 5.8441 -7.1411 1.8002 15 1 4.3746 -7.1518 3.7293 16 6 2.8569 -1.8497 -0.7369 17 7 2.0300 -0.7139 -1.1840 18 6 1.7755 -0.3842 -2.4657 19 8 1.0779 0.5785 -2.7186 20 6 2.3448 -1.1936 -3.5644 21 6 2.0820 -0.8524 -4.8972 22 6 2.6360 -1.6396 -5.8900 23 6 3.4236 -2.7255 -5.5034 24 7 3.9993 -3.5413 -6.4632 25 6 4.9569 -2.7791 -7.3049 26 6 5.8513 -3.8867 -7.9161 27 6 5.9921 -4.8975 -6.7549 28 6 4.7880 -4.6234 -5.8352 29 7 3.6208 -2.9746 -4.2133 30 7 3.1123 -2.2416 -3.2904 31 1 -0.3633 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8801 33 1 -0.3633 -1.0275 -0.0197 34 1 1.2918 -0.7890 2.0200 35 1 2.9657 -0.2831 1.6182 36 1 4.0389 -2.3007 1.9749 37 1 6.0084 -4.5439 3.4637 38 1 3.9092 -1.5665 -0.7129 39 1 2.7089 -2.7078 -1.3924 40 1 1.4647 -0.0008 -5.1421 41 1 2.4652 -1.4203 -6.9337 42 1 4.4308 -2.2334 -8.0882 43 1 5.5502 -2.0994 -6.6932 44 1 6.8246 -3.4849 -8.1978 45 1 5.3611 -4.3492 -8.7728 46 1 6.9249 -4.7283 -6.2170 47 1 5.9535 -5.9183 -7.1351 48 1 5.1361 -4.3067 -4.8521 49 1 4.1784 -5.5225 -5.7443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989664815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:59 Heat of formation + Delta-G solvation = 47.272408 kcal Electronic energy + Delta-G solvation = -30651.181954 eV Core-core repulsion = 26613.989289 eV Total energy + Delta-G solvation = -4037.192665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.58086 -41.19825 -39.77815 -38.79812 -36.01669 -34.81102 -34.27814 -33.29388 -32.80037 -30.71706 -30.09226 -29.99084 -26.88879 -26.32723 -25.74112 -25.51872 -23.55674 -22.49358 -21.85293 -21.76119 -20.67198 -19.32956 -18.97649 -18.65607 -18.10289 -17.23012 -17.15643 -16.78356 -16.51436 -16.05658 -15.72860 -15.47033 -15.18601 -14.97587 -14.88716 -14.71727 -14.46829 -14.41936 -14.17414 -13.87776 -13.68506 -13.30393 -13.26530 -13.10071 -13.01079 -12.90050 -12.81462 -12.33988 -12.22567 -12.18482 -12.06386 -11.93689 -11.72246 -11.60568 -11.50325 -11.43490 -11.38265 -11.24651 -10.91778 -10.75055 -9.76595 -9.64239 -9.03533 -7.94515 -5.23684 -0.67558 -0.31436 1.44350 1.47964 1.49002 1.58585 1.74962 2.25149 2.49490 2.56358 2.83449 3.19194 3.36804 3.41886 3.52444 3.64170 3.73522 3.82499 3.85525 3.88329 3.98943 4.06832 4.11548 4.24373 4.33703 4.36805 4.46335 4.46839 4.50640 4.61193 4.66107 4.73069 4.82801 4.83654 4.92438 4.93772 4.99266 5.01901 5.05746 5.11329 5.17647 5.21234 5.25999 5.35530 5.43837 5.52515 5.54344 5.72008 6.26726 6.35264 6.85755 7.34591 7.45007 8.05107 8.30412 9.28682 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.007608 B = 0.003844 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3679.360460 B = 7281.643490 C =10563.372280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.083 0.917 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.062 0.938 7 N -0.720 5.720 8 C -0.240 4.240 9 H 0.073 0.927 10 C -0.067 4.067 11 N -0.966 5.966 12 Si 0.967 3.033 13 H -0.269 1.269 14 H -0.294 1.294 15 H -0.291 1.291 16 C 0.095 3.905 17 N -0.589 5.589 18 C 0.586 3.414 19 O -0.556 6.556 20 C -0.016 4.016 21 C -0.043 4.043 22 C -0.115 4.115 23 C 0.254 3.746 24 N -0.454 5.454 25 C 0.037 3.963 26 C -0.115 4.115 27 C -0.130 4.130 28 C 0.025 3.975 29 N -0.312 5.312 30 N -0.203 5.203 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.377 0.623 37 H 0.251 0.749 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.185 0.815 41 H 0.200 0.800 42 H 0.121 0.879 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 6.690 -23.752 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.101 0.899 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.080 0.920 7 N -0.359 5.359 8 C -0.372 4.372 9 H 0.091 0.909 10 C -0.260 4.260 11 N -0.616 5.616 12 Si 0.797 3.203 13 H -0.194 1.194 14 H -0.222 1.222 15 H -0.218 1.218 16 C -0.031 4.031 17 N -0.320 5.320 18 C 0.373 3.627 19 O -0.435 6.435 20 C -0.166 4.166 21 C -0.072 4.072 22 C -0.145 4.145 23 C 0.016 3.984 24 N -0.172 5.172 25 C -0.087 4.087 26 C -0.152 4.152 27 C -0.168 4.168 28 C -0.102 4.102 29 N -0.160 5.160 30 N -0.048 5.048 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.210 0.790 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.203 0.797 41 H 0.217 0.783 42 H 0.139 0.861 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.051 5.831 -23.160 24.224 hybrid contribution 0.514 0.026 0.182 0.546 sum -3.538 5.857 -22.978 23.975 Atomic orbital electron populations 1.22079 0.93324 1.02247 1.03414 1.21717 0.95652 0.95994 0.83298 0.89946 1.22958 1.02277 0.94757 0.96458 1.21483 0.91360 0.92701 0.89033 0.91953 1.42391 1.34279 1.03309 1.55934 1.19610 1.10439 0.83951 1.23183 0.90863 1.25463 0.98190 1.01871 1.00463 1.69808 1.19929 1.35395 1.36468 0.85167 0.77254 0.80867 0.77059 1.19351 1.22174 1.21799 1.23333 0.93456 0.88047 0.98226 1.48508 1.48615 1.30131 1.04748 1.17317 0.80468 0.83578 0.81332 1.90728 1.40228 1.28991 1.83529 1.22753 1.01296 0.96930 0.95623 1.22509 0.95457 0.99419 0.89784 1.22310 0.95783 0.93020 1.03429 1.22120 0.94149 0.91230 0.90929 1.61816 1.30327 1.09018 1.16063 1.23605 0.92461 0.96475 0.96190 1.22542 1.00360 0.94521 0.97814 1.22452 0.96533 1.01567 0.96290 1.22990 0.95077 0.93931 0.98194 1.73385 1.19105 1.24253 0.99294 1.73419 1.04030 1.01278 1.26108 0.89145 0.92256 0.92991 0.88310 0.90695 0.78985 0.93975 0.93307 0.89885 0.79745 0.78268 0.86068 0.93196 0.88475 0.88907 0.91033 0.89278 0.92329 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.05 71.98 0.65 -3.32 16 2 C 0.14 4.03 3.49 45.34 0.16 4.19 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.13 -3.99 6.14 31.78 0.20 -3.80 16 5 C 0.17 6.60 3.71 46.38 0.17 6.77 16 6 H 0.06 2.54 8.09 -2.39 -0.02 2.52 16 7 N -0.72 -36.06 5.24 -316.37 -1.66 -37.72 16 8 C -0.24 -13.34 9.96 84.03 0.84 -12.50 16 9 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 10 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 11 N -0.97 -58.72 13.06 21.65 0.28 -58.43 16 12 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 C 0.10 3.72 5.64 86.85 0.49 4.21 16 17 N -0.59 -20.04 3.08 -791.41 -2.44 -22.47 16 18 C 0.59 19.61 7.62 86.79 0.66 20.27 16 19 O -0.56 -19.13 15.29 -3.89 -0.06 -19.19 16 20 C -0.02 -0.51 6.80 42.00 0.29 -0.22 16 21 C -0.04 -0.95 9.71 22.72 0.22 -0.73 16 22 C -0.11 -2.06 9.57 22.61 0.22 -1.85 16 23 C 0.25 6.10 6.27 133.21 0.84 6.94 16 24 N -0.45 -8.77 5.29 -689.01 -3.65 -12.42 16 25 C 0.04 0.46 6.06 86.65 0.53 0.98 16 26 C -0.11 -1.09 7.06 31.80 0.22 -0.87 16 27 C -0.13 -1.84 6.93 31.46 0.22 -1.62 16 28 C 0.03 0.54 6.35 86.44 0.55 1.08 16 29 N -0.31 -10.14 9.32 -55.17 -0.51 -10.65 16 30 N -0.20 -7.12 7.80 -48.51 -0.38 -7.50 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.65 6.77 -2.38 -0.02 1.64 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 2.79 7.83 -2.39 -0.02 2.77 16 35 H 0.07 2.42 8.00 -2.38 -0.02 2.40 16 36 H 0.38 20.09 7.76 -92.71 -0.72 19.37 16 37 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.08 3.50 5.90 -2.39 -0.01 3.49 16 40 H 0.19 3.14 7.71 -2.91 -0.02 3.12 16 41 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.72 7.99 -2.39 -0.02 0.71 16 44 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.06 1.61 6.50 -2.39 -0.02 1.60 16 49 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.66 392.00 0.57 -71.09 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.25 Total: 32.58 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.71 Total: 16.15 kcal Atomic # 7 Polarization: -140.84 SS G_CDS: -8.35 Total: -149.19 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -71.66 0.57 -71.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989664815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.366 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds