Wall clock time and date at job start Wed Apr 1 2020 03:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99777 * 2 1 4 4 N 1.46503 * 109.47198 * 124.99712 * 3 2 1 5 5 C 1.34817 * 126.59105 * 125.27487 * 4 3 2 6 6 C 1.36601 * 106.83348 * 180.10937 * 5 4 3 7 7 C 1.47523 * 125.76567 * 179.89550 * 6 5 4 8 8 O 1.21592 * 120.00382 * 359.71949 * 7 6 5 9 9 N 1.34780 * 119.99655 * 179.71327 * 7 6 5 10 10 C 1.47165 * 125.65109 * 359.97438 * 9 7 6 11 11 C 1.55337 * 106.96529 * 180.98186 * 10 9 7 12 12 H 1.09004 * 112.91338 * 214.96218 * 11 10 9 13 13 C 1.53006 * 106.41860 * 91.60239 * 11 10 9 14 14 C 1.52595 * 111.05298 * 197.21087 * 13 11 10 15 15 C 1.53328 * 108.40971 * 62.35154 * 14 13 11 16 16 C 1.52819 * 108.09330 * 295.87168 * 15 14 13 17 17 H 1.09003 * 108.96645 * 179.45783 * 16 15 14 18 18 N 1.46496 * 109.03143 * 298.33922 * 16 15 14 19 19 C 1.36945 * 119.99718 * 277.23752 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.50734 * 111.74388 * 58.92224 * 16 15 14 28 28 H 1.09003 * 109.26931 * 186.22900 * 27 16 15 29 29 C 1.47822 * 125.64470 * 179.97438 * 9 7 6 30 30 N 1.34397 * 108.45811 * 359.63190 * 6 5 4 31 31 N 1.28759 * 109.52766 * 0.23086 * 30 6 5 32 32 H 1.07997 * 120.00598 * 0.02562 * 1 2 3 33 33 H 1.08007 * 119.99579 * 179.97438 * 1 2 3 34 34 H 1.07997 * 120.00598 * 179.97438 * 2 1 3 35 35 H 1.09008 * 109.46822 * 5.00139 * 3 2 1 36 36 H 1.08997 * 109.47488 * 245.00172 * 3 2 1 37 37 H 1.07992 * 126.57999 * 359.97099 * 5 4 3 38 38 H 1.08999 * 109.96660 * 61.59919 * 10 9 7 39 39 H 1.09010 * 109.99065 * 300.37391 * 10 9 7 40 40 H 1.08997 * 109.16393 * 317.61348 * 13 11 10 41 41 H 1.08998 * 109.16647 * 76.85859 * 13 11 10 42 42 H 1.09006 * 109.67285 * 182.08417 * 14 13 11 43 43 H 1.08999 * 109.67590 * 302.61965 * 14 13 11 44 44 H 1.09001 * 109.73461 * 176.22291 * 15 14 13 45 45 H 1.08997 * 109.73577 * 55.52957 * 15 14 13 46 46 H 0.96996 * 120.00499 * 97.23482 * 18 16 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 48 48 H 1.08999 * 110.50586 * 84.68886 * 29 9 7 49 49 H 1.08992 * 110.51126 * 321.97673 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3221 1.5550 1.0746 6 6 4.7898 1.4873 2.3563 7 6 6.1936 1.6672 2.7725 8 8 7.0505 1.8932 1.9399 9 7 6.5264 1.5813 4.0757 10 6 5.5945 1.3148 5.1831 11 6 6.4296 1.3341 6.4928 12 1 6.0755 0.6160 7.2325 13 6 6.3795 2.7709 7.0164 14 6 7.4830 3.0199 8.0406 15 6 8.8379 2.8340 7.3474 16 6 8.9502 1.3745 6.9084 17 1 9.9057 1.2286 6.4045 18 7 8.8989 0.5141 8.0929 19 6 10.0327 0.2941 8.8289 20 1 10.9645 0.7546 8.5358 21 6 9.9840 -0.5207 9.9516 22 7 8.8484 -1.0823 10.3085 23 14 11.5307 -0.8214 10.9551 24 1 11.2145 -1.7195 12.0947 25 1 12.5626 -1.4555 10.0960 26 1 12.0442 0.4722 11.4727 27 6 7.8359 0.9862 5.9705 28 1 7.8899 -0.0841 5.7713 29 6 7.8878 1.7392 4.6294 30 7 3.7539 1.2349 3.1745 31 7 2.6727 1.1365 2.4822 32 1 -0.5401 0.9352 -0.0004 33 1 -0.5400 -0.9354 -0.0004 34 1 1.8501 -0.9352 0.0004 35 1 1.3584 2.1317 0.0896 36 1 2.6212 1.4028 -0.9313 37 1 4.9049 1.7477 0.1861 38 1 5.1305 0.3372 5.0520 39 1 4.8276 2.0886 5.2193 40 1 6.5041 3.4605 6.1816 41 1 5.4113 2.9476 7.4848 42 1 7.4039 4.0367 8.4254 43 1 7.3897 2.3082 8.8609 44 1 9.6428 3.0723 8.0427 45 1 8.8982 3.4863 6.4762 46 1 8.0621 0.1003 8.3560 47 1 8.8146 -1.6520 11.0929 48 1 8.1141 2.7930 4.7918 49 1 8.6248 1.2872 3.9658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992824706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:02 Heat of formation + Delta-G solvation = 100.766805 kcal Electronic energy + Delta-G solvation = -30389.032653 eV Core-core repulsion = 26354.159679 eV Total energy + Delta-G solvation = -4034.872974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43075 -40.33837 -38.43615 -36.43460 -35.51697 -33.39607 -33.14180 -31.50243 -31.24389 -30.24848 -29.23558 -27.59451 -26.36820 -25.02209 -23.55539 -22.66471 -22.28377 -21.77631 -20.90556 -20.78279 -19.64331 -18.17492 -17.57006 -17.13002 -16.49909 -16.36140 -15.90772 -15.76449 -15.44507 -14.84972 -14.81019 -14.47761 -14.10572 -13.80516 -13.72788 -13.53446 -13.21971 -13.11635 -12.77406 -12.65815 -12.46336 -12.25508 -12.06616 -11.62014 -11.57218 -11.42386 -11.25659 -10.98075 -10.87343 -10.78634 -10.71650 -10.63393 -10.25179 -10.17282 -10.10347 -9.96006 -9.65867 -9.51574 -9.50207 -9.38520 -8.79762 -8.46242 -6.89848 -5.71987 -2.99738 0.87687 1.24666 1.59411 2.05293 2.98721 3.25088 3.47209 3.52031 3.52449 3.88873 3.99912 4.12975 4.37909 4.42772 4.60975 4.69031 4.78058 4.80380 4.97606 5.06089 5.11279 5.22053 5.41472 5.47283 5.55696 5.62762 5.73222 5.75761 5.87097 5.87830 5.90392 5.91688 5.98581 6.02811 6.07777 6.13959 6.20497 6.23826 6.31097 6.47087 6.48943 6.56109 6.61404 6.89900 6.94024 7.10834 7.18470 7.55411 7.72750 7.74924 8.14785 8.46876 9.58313 10.15959 10.51420 11.50593 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002188 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.610153 B =12795.305448 C =13128.784618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.182 4.182 3 C 0.152 3.848 4 N -0.361 5.361 5 C 0.090 3.910 6 C -0.094 4.094 7 C 0.614 3.386 8 O -0.547 6.547 9 N -0.598 5.598 10 C 0.111 3.889 11 C -0.088 4.088 12 H 0.101 0.899 13 C -0.107 4.107 14 C -0.113 4.113 15 C -0.134 4.134 16 C 0.190 3.810 17 H 0.046 0.954 18 N -0.719 5.719 19 C -0.234 4.234 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.287 1.287 27 C -0.096 4.096 28 H 0.079 0.921 29 C 0.116 3.884 30 N -0.199 5.199 31 N -0.061 5.061 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.204 0.796 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.074 0.926 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.237 6.812 -22.247 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.201 4.201 3 C 0.031 3.969 4 N -0.146 5.146 5 C -0.067 4.067 6 C -0.233 4.233 7 C 0.401 3.599 8 O -0.425 6.425 9 N -0.330 5.330 10 C -0.012 4.012 11 C -0.107 4.107 12 H 0.119 0.881 13 C -0.145 4.145 14 C -0.150 4.150 15 C -0.174 4.174 16 C 0.079 3.921 17 H 0.064 0.936 18 N -0.361 5.361 19 C -0.365 4.365 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.115 4.115 28 H 0.097 0.903 29 C -0.006 4.006 30 N -0.072 5.072 31 N -0.042 5.042 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.221 0.779 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.092 0.908 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.778 6.626 -21.721 28.235 hybrid contribution 1.135 -0.206 -0.125 1.160 sum -15.643 6.420 -21.846 27.626 Atomic orbital electron populations 1.24007 0.95460 1.02887 0.96156 1.22865 0.96389 0.97381 1.03484 1.21103 0.91936 0.98229 0.85605 1.50561 1.06648 1.48218 1.09187 1.23368 0.84623 0.98029 1.00630 1.21432 0.95392 1.16071 0.90414 1.16337 0.84948 0.77298 0.81346 1.90798 1.49500 1.51240 1.50953 1.48352 1.10670 1.68671 1.05297 1.22508 0.91739 1.01704 0.85267 1.22231 0.94857 0.98299 0.95309 0.88107 1.21520 0.99029 0.95203 0.98737 1.21398 0.94378 1.00596 0.98648 1.22188 0.97476 0.98668 0.99072 1.19482 0.94584 0.90040 0.87971 0.93594 1.42384 1.10181 1.55706 1.27785 1.19181 0.88989 1.23420 1.04959 0.91303 1.24701 0.96808 1.00501 0.98958 1.69645 1.24245 1.36427 1.27876 0.86306 0.82776 0.77554 0.79774 1.21841 1.21396 1.21395 1.21753 0.95608 1.00595 0.93583 0.90263 1.22271 0.82897 1.00995 0.94483 1.74795 0.96314 1.09589 1.26541 1.82043 1.17157 1.21764 0.83192 0.87883 0.87324 0.86393 0.88018 0.86855 0.77912 0.91107 0.90726 0.92803 0.92588 0.93562 0.90191 0.91907 0.93796 0.78191 0.93569 0.90789 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 14.32 29.01 0.42 -0.16 16 2 C -0.18 -0.87 9.72 -36.02 -0.35 -1.22 16 3 C 0.15 0.64 6.98 -5.19 -0.04 0.60 16 4 N -0.36 -3.08 3.68 -62.23 -0.23 -3.31 16 5 C 0.09 0.83 11.27 -16.83 -0.19 0.64 16 6 C -0.09 -1.21 6.85 -83.55 -0.57 -1.78 16 7 C 0.61 9.25 7.85 -12.47 -0.10 9.15 16 8 O -0.55 -9.29 17.14 5.28 0.09 -9.20 16 9 N -0.60 -8.88 3.34 -171.31 -0.57 -9.45 16 10 C 0.11 1.55 4.81 -2.44 -0.01 1.54 16 11 C -0.09 -1.33 3.28 -88.85 -0.29 -1.62 16 12 H 0.10 1.62 7.97 -51.93 -0.41 1.21 16 13 C -0.11 -1.56 4.62 -26.94 -0.12 -1.68 16 14 C -0.11 -1.88 5.85 -26.77 -0.16 -2.04 16 15 C -0.13 -2.34 5.44 -26.65 -0.14 -2.48 16 16 C 0.19 3.62 2.52 -69.16 -0.17 3.44 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -17.14 4.18 -54.63 -0.23 -17.37 16 19 C -0.23 -6.32 9.89 -15.06 -0.15 -6.47 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 23 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 C -0.10 -1.57 2.30 -90.77 -0.21 -1.78 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 C 0.12 1.74 5.85 -2.85 -0.02 1.73 16 30 N -0.20 -2.68 9.78 32.85 0.32 -2.36 16 31 N -0.06 -0.74 13.64 60.35 0.82 0.08 16 32 H 0.10 0.29 7.84 -52.49 -0.41 -0.13 16 33 H 0.11 0.36 8.06 -52.48 -0.42 -0.07 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.10 0.30 7.79 -51.92 -0.40 -0.10 16 36 H 0.11 0.14 8.08 -51.93 -0.42 -0.27 16 37 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 39 H 0.07 1.02 7.22 -51.92 -0.38 0.65 16 40 H 0.05 0.76 7.16 -51.93 -0.37 0.39 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.59 7.40 -51.93 -0.38 1.20 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.04 0.68 6.80 -51.93 -0.35 0.32 16 46 H 0.38 9.73 7.31 -40.82 -0.30 9.43 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.07 1.08 6.15 -51.93 -0.32 0.77 16 49 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -33.09 393.22 -7.87 -40.96 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.50 Total: 7.03 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.20 Total: -2.62 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.84 Total: -59.39 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.09 -7.87 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.727 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds