Wall clock time and date at job start Wed Apr 1 2020 03:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99777 * 2 1 4 4 N 1.46503 * 109.47198 * 124.99712 * 3 2 1 5 5 C 1.34817 * 126.59105 * 125.27487 * 4 3 2 6 6 C 1.36601 * 106.83348 * 180.10937 * 5 4 3 7 7 C 1.47523 * 125.76567 * 179.89550 * 6 5 4 8 8 O 1.21592 * 120.00382 * 359.71949 * 7 6 5 9 9 N 1.34780 * 119.99655 * 179.71327 * 7 6 5 10 10 C 1.47165 * 125.65109 * 359.97438 * 9 7 6 11 11 C 1.55337 * 106.96529 * 180.98186 * 10 9 7 12 12 H 1.09004 * 112.91338 * 214.96218 * 11 10 9 13 13 C 1.53006 * 106.41860 * 91.60239 * 11 10 9 14 14 C 1.52595 * 111.05298 * 197.21087 * 13 11 10 15 15 C 1.53328 * 108.40971 * 62.35154 * 14 13 11 16 16 C 1.52819 * 108.09330 * 295.87168 * 15 14 13 17 17 H 1.09003 * 108.96645 * 179.45783 * 16 15 14 18 18 N 1.46496 * 109.03143 * 298.33922 * 16 15 14 19 19 C 1.36945 * 119.99718 * 277.23752 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.50734 * 111.74388 * 58.92224 * 16 15 14 28 28 H 1.09003 * 109.26931 * 186.22900 * 27 16 15 29 29 C 1.47822 * 125.64470 * 179.97438 * 9 7 6 30 30 N 1.34397 * 108.45811 * 359.63190 * 6 5 4 31 31 N 1.28759 * 109.52766 * 0.23086 * 30 6 5 32 32 H 1.07997 * 120.00598 * 0.02562 * 1 2 3 33 33 H 1.08007 * 119.99579 * 179.97438 * 1 2 3 34 34 H 1.07997 * 120.00598 * 179.97438 * 2 1 3 35 35 H 1.09008 * 109.46822 * 5.00139 * 3 2 1 36 36 H 1.08997 * 109.47488 * 245.00172 * 3 2 1 37 37 H 1.07992 * 126.57999 * 359.97099 * 5 4 3 38 38 H 1.08999 * 109.96660 * 61.59919 * 10 9 7 39 39 H 1.09010 * 109.99065 * 300.37391 * 10 9 7 40 40 H 1.08997 * 109.16393 * 317.61348 * 13 11 10 41 41 H 1.08998 * 109.16647 * 76.85859 * 13 11 10 42 42 H 1.09006 * 109.67285 * 182.08417 * 14 13 11 43 43 H 1.08999 * 109.67590 * 302.61965 * 14 13 11 44 44 H 1.09001 * 109.73461 * 176.22291 * 15 14 13 45 45 H 1.08997 * 109.73577 * 55.52957 * 15 14 13 46 46 H 0.96996 * 120.00499 * 97.23482 * 18 16 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 48 48 H 1.08999 * 110.50586 * 84.68886 * 29 9 7 49 49 H 1.08992 * 110.51126 * 321.97673 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3221 1.5550 1.0746 6 6 4.7898 1.4873 2.3563 7 6 6.1936 1.6672 2.7725 8 8 7.0505 1.8932 1.9399 9 7 6.5264 1.5813 4.0757 10 6 5.5945 1.3148 5.1831 11 6 6.4296 1.3341 6.4928 12 1 6.0755 0.6160 7.2325 13 6 6.3795 2.7709 7.0164 14 6 7.4830 3.0199 8.0406 15 6 8.8379 2.8340 7.3474 16 6 8.9502 1.3745 6.9084 17 1 9.9057 1.2286 6.4045 18 7 8.8989 0.5141 8.0929 19 6 10.0327 0.2941 8.8289 20 1 10.9645 0.7546 8.5358 21 6 9.9840 -0.5207 9.9516 22 7 8.8484 -1.0823 10.3085 23 14 11.5307 -0.8214 10.9551 24 1 11.2145 -1.7195 12.0947 25 1 12.5626 -1.4555 10.0960 26 1 12.0442 0.4722 11.4727 27 6 7.8359 0.9862 5.9705 28 1 7.8899 -0.0841 5.7713 29 6 7.8878 1.7392 4.6294 30 7 3.7539 1.2349 3.1745 31 7 2.6727 1.1365 2.4822 32 1 -0.5401 0.9352 -0.0004 33 1 -0.5400 -0.9354 -0.0004 34 1 1.8501 -0.9352 0.0004 35 1 1.3584 2.1317 0.0896 36 1 2.6212 1.4028 -0.9313 37 1 4.9049 1.7477 0.1861 38 1 5.1305 0.3372 5.0520 39 1 4.8276 2.0886 5.2193 40 1 6.5041 3.4605 6.1816 41 1 5.4113 2.9476 7.4848 42 1 7.4039 4.0367 8.4254 43 1 7.3897 2.3082 8.8609 44 1 9.6428 3.0723 8.0427 45 1 8.8982 3.4863 6.4762 46 1 8.0621 0.1003 8.3560 47 1 8.8146 -1.6520 11.0929 48 1 8.1141 2.7930 4.7918 49 1 8.6248 1.2872 3.9658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992824706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:01 Heat of formation + Delta-G solvation = 79.812567 kcal Electronic energy + Delta-G solvation = -30389.941297 eV Core-core repulsion = 26354.159679 eV Total energy + Delta-G solvation = -4035.781618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.23968 -41.60607 -39.68170 -37.04366 -36.86416 -35.05781 -33.77823 -33.11931 -32.34592 -31.39089 -30.84388 -28.26884 -27.65326 -26.37239 -25.18431 -23.57852 -23.31898 -23.06874 -22.25816 -21.30736 -20.50018 -19.44393 -19.14641 -18.60947 -17.47634 -17.36247 -16.95570 -16.51764 -16.45854 -16.12032 -15.92200 -15.57486 -15.35370 -15.23136 -15.12316 -14.76967 -14.47908 -14.18180 -14.07348 -13.76300 -13.47404 -13.24791 -13.03665 -12.88891 -12.74942 -12.65317 -12.58691 -12.56077 -12.37732 -12.22005 -12.11286 -11.99449 -11.78436 -11.37025 -11.36192 -11.16026 -11.13372 -10.81942 -10.64203 -10.57941 -10.32939 -9.64902 -8.91290 -7.87455 -5.13620 0.14741 0.62303 0.79396 1.49439 1.51428 1.57116 1.58829 1.89346 2.19577 2.60421 3.09689 3.38796 3.45262 3.49490 3.56508 3.76536 3.81612 3.83379 3.96536 4.12109 4.13556 4.23618 4.33434 4.39061 4.42837 4.48661 4.54225 4.57135 4.60621 4.68271 4.75298 4.83984 4.85901 4.92306 4.93950 4.95010 5.11891 5.18102 5.22617 5.30993 5.41168 5.44616 5.51041 5.57060 5.57140 5.66708 5.67174 5.75701 6.34570 6.40735 6.81929 7.06944 7.41750 8.18913 8.42924 9.35725 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002188 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.610153 B =12795.305448 C =13128.784618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.198 4.198 3 C 0.143 3.857 4 N -0.347 5.347 5 C 0.113 3.887 6 C -0.125 4.125 7 C 0.615 3.385 8 O -0.570 6.570 9 N -0.602 5.602 10 C 0.126 3.874 11 C -0.086 4.086 12 H 0.086 0.914 13 C -0.098 4.098 14 C -0.108 4.108 15 C -0.127 4.127 16 C 0.187 3.813 17 H 0.038 0.962 18 N -0.727 5.727 19 C -0.229 4.229 20 H 0.073 0.927 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.966 3.034 24 H -0.299 1.299 25 H -0.281 1.281 26 H -0.280 1.280 27 C -0.088 4.088 28 H 0.059 0.941 29 C 0.124 3.876 30 N -0.221 5.221 31 N -0.085 5.085 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.239 0.761 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.374 0.626 47 H 0.248 0.752 48 H 0.085 0.915 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.084 8.482 -24.607 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.217 4.217 3 C 0.025 3.975 4 N -0.131 5.131 5 C -0.045 4.045 6 C -0.265 4.265 7 C 0.403 3.597 8 O -0.450 6.450 9 N -0.333 5.333 10 C 0.003 3.997 11 C -0.105 4.105 12 H 0.104 0.896 13 C -0.136 4.136 14 C -0.146 4.146 15 C -0.167 4.167 16 C 0.079 3.921 17 H 0.056 0.944 18 N -0.368 5.368 19 C -0.362 4.362 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.796 3.204 24 H -0.226 1.226 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.107 4.107 28 H 0.077 0.923 29 C 0.002 3.998 30 N -0.095 5.095 31 N -0.066 5.066 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.206 0.794 47 H 0.057 0.943 48 H 0.103 0.897 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.647 8.323 -24.121 31.024 hybrid contribution 1.319 -0.718 0.445 1.566 sum -16.328 7.605 -23.676 29.749 Atomic orbital electron populations 1.24203 0.95352 1.03750 0.94745 1.22871 0.96752 0.97345 1.04752 1.21601 0.92187 0.98395 0.85353 1.50862 1.07045 1.46209 1.08965 1.23852 0.84817 0.95442 1.00398 1.21339 0.94383 1.18785 0.91957 1.16614 0.85773 0.76485 0.80875 1.90774 1.50453 1.52433 1.51353 1.48376 1.10413 1.68884 1.05668 1.22343 0.91342 1.01768 0.84208 1.22165 0.94037 0.98622 0.95672 0.89573 1.21451 0.98933 0.94634 0.98535 1.21323 0.94672 1.00540 0.98056 1.22074 0.97344 0.97500 0.99742 1.19649 0.95306 0.90428 0.86739 0.94379 1.42523 1.08935 1.56411 1.28890 1.19536 0.89921 1.22018 1.04683 0.90926 1.25430 0.99460 1.01365 1.00560 1.69800 1.26097 1.37711 1.28337 0.85320 0.79670 0.77345 0.78085 1.22550 1.20786 1.20662 1.21523 0.95568 0.99604 0.94046 0.92270 1.22126 0.83319 1.01151 0.93246 1.74751 0.96750 1.10333 1.27621 1.81953 1.16947 1.22702 0.84973 0.86520 0.87083 0.87536 0.86272 0.83278 0.74477 0.91679 0.89801 0.91392 0.91087 0.91808 0.93808 0.93909 0.90860 0.79354 0.94311 0.89684 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 14.32 67.78 0.97 0.14 16 2 C -0.20 -1.51 9.72 25.65 0.25 -1.26 16 3 C 0.14 0.74 6.98 85.63 0.60 1.33 16 4 N -0.35 -5.03 3.68 -350.81 -1.29 -6.32 16 5 C 0.11 1.78 11.27 83.85 0.95 2.73 16 6 C -0.13 -3.04 6.85 40.82 0.28 -2.76 16 7 C 0.61 17.80 7.85 86.69 0.68 18.48 16 8 O -0.57 -18.61 17.14 -4.01 -0.07 -18.68 16 9 N -0.60 -17.32 3.34 -814.15 -2.72 -20.04 16 10 C 0.13 3.45 4.81 87.06 0.42 3.87 16 11 C -0.09 -2.58 3.28 -9.65 -0.03 -2.62 16 12 H 0.09 2.86 7.97 -2.39 -0.02 2.85 16 13 C -0.10 -2.70 4.62 30.46 0.14 -2.56 16 14 C -0.11 -3.53 5.85 30.57 0.18 -3.35 16 15 C -0.13 -4.32 5.44 30.64 0.17 -4.16 16 16 C 0.19 7.20 2.52 44.20 0.11 7.31 16 17 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 18 N -0.73 -35.59 4.18 -326.75 -1.36 -36.96 16 19 C -0.23 -12.58 9.89 84.03 0.83 -11.75 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 22 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 23 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 24 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 C -0.09 -2.89 2.30 -10.89 -0.03 -2.92 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 C 0.12 3.62 5.85 86.43 0.51 4.13 16 30 N -0.22 -5.77 9.78 -49.99 -0.49 -6.26 16 31 N -0.09 -1.95 13.64 37.02 0.50 -1.45 16 32 H 0.12 0.34 7.84 -2.91 -0.02 0.32 16 33 H 0.11 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.12 0.27 7.79 -2.38 -0.02 0.25 16 36 H 0.15 -0.28 8.08 -2.39 -0.02 -0.30 16 37 H 0.24 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.06 1.88 7.73 -2.39 -0.02 1.86 16 39 H 0.08 2.18 7.22 -2.38 -0.02 2.17 16 40 H 0.07 1.72 7.16 -2.39 -0.02 1.70 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.04 1.76 7.40 -2.39 -0.02 1.74 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.07 2.09 6.80 -2.39 -0.02 2.07 16 46 H 0.37 19.71 7.31 -92.71 -0.68 19.03 16 47 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 48 H 0.09 2.31 6.15 -2.39 -0.01 2.29 16 49 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 Total: -1.00 -73.19 393.22 3.65 -69.54 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.28 Total: 27.63 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.49 Total: 2.74 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -5.08 Total: -129.87 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.07 Total: -18.68 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.19 3.65 -69.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.352 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds