Wall clock time and date at job start Wed Apr 1 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00095 * 2 1 4 4 N 1.46495 * 109.47291 * 124.99597 * 3 2 1 5 5 C 1.34813 * 126.59505 * 124.99957 * 4 3 2 6 6 C 1.36595 * 106.84056 * 180.02562 * 5 4 3 7 7 C 1.47530 * 125.76744 * 180.02562 * 6 5 4 8 8 O 1.21593 * 120.00378 * 7.22377 * 7 6 5 9 9 N 1.34776 * 119.99543 * 187.21576 * 7 6 5 10 10 C 1.46943 * 120.85209 * 6.31345 * 9 7 6 11 11 C 1.53153 * 109.02079 * 125.94695 * 10 9 7 12 12 C 1.53110 * 109.48130 * 54.07512 * 11 10 9 13 13 C 1.52853 * 109.35054 * 299.35841 * 12 11 10 14 14 H 1.09002 * 109.25432 * 302.48729 * 13 12 11 15 15 C 1.52761 * 110.20765 * 182.43306 * 13 12 11 16 16 N 1.44118 * 110.29188 * 293.51149 * 15 13 12 17 17 C 1.36936 * 121.34795 * 126.17783 * 16 15 13 18 18 H 1.08007 * 119.99948 * 329.14110 * 17 16 15 19 19 C 1.38807 * 119.99741 * 149.14989 * 17 16 15 20 20 N 1.31618 * 120.00038 * 340.56896 * 19 17 16 21 21 Si 1.86807 * 119.99935 * 160.57547 * 19 17 16 22 22 H 1.48495 * 109.47125 * 59.99308 * 21 19 17 23 23 H 1.48498 * 109.47091 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47033 * 299.99761 * 21 19 17 25 25 C 1.46964 * 117.87774 * 305.98955 * 16 15 13 26 26 C 1.53096 * 108.62158 * 54.49323 * 25 16 15 27 27 C 1.47309 * 120.84690 * 186.03512 * 9 7 6 28 28 H 1.09004 * 110.07202 * 355.12512 * 27 9 7 29 29 N 1.34395 * 108.46185 * 0.02562 * 6 5 4 30 30 N 1.28760 * 109.52028 * 359.97438 * 29 6 5 31 31 H 1.07994 * 120.00324 * 0.02562 * 1 2 3 32 32 H 1.08001 * 120.00020 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.99743 * 179.97438 * 2 1 3 34 34 H 1.09003 * 109.46966 * 5.00067 * 3 2 1 35 35 H 1.09001 * 109.47352 * 245.00174 * 3 2 1 36 36 H 1.08004 * 126.58228 * 0.02562 * 5 4 3 37 37 H 1.08999 * 109.55322 * 245.80904 * 10 9 7 38 38 H 1.09001 * 109.54606 * 6.09095 * 10 9 7 39 39 H 1.09000 * 109.46743 * 174.07821 * 11 10 9 40 40 H 1.08994 * 109.46433 * 294.07182 * 11 10 9 41 41 H 1.09007 * 109.49072 * 59.31700 * 12 11 10 42 42 H 1.08996 * 109.49000 * 179.36585 * 12 11 10 43 43 H 1.09000 * 109.52163 * 52.56449 * 15 13 12 44 44 H 1.09001 * 109.51805 * 172.73928 * 15 13 12 45 45 H 0.97007 * 119.99609 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.61285 * 294.75586 * 25 16 15 47 47 H 1.08999 * 109.61261 * 174.23649 * 25 16 15 48 48 H 1.09006 * 109.45783 * 184.62201 * 26 25 16 49 49 H 1.09005 * 109.43523 * 64.67463 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3229 1.5497 1.0741 6 6 4.7900 1.4861 2.3561 7 6 6.1939 1.6654 2.7723 8 8 7.0277 2.0207 1.9617 9 7 6.5523 1.4354 4.0510 10 6 5.5935 0.8748 5.0131 11 6 6.2041 -0.3738 5.6564 12 6 7.5704 -0.0248 6.2527 13 6 8.4976 0.4664 5.1412 14 1 8.5782 -0.3036 4.3739 15 6 9.8860 0.7633 5.7048 16 7 9.8289 1.8829 6.6104 17 6 10.3141 1.7916 7.8877 18 1 10.2854 0.8466 8.4100 19 6 10.8426 2.9135 8.5112 20 7 11.2329 3.9439 7.7913 21 14 11.0001 2.9608 10.3720 22 1 11.8793 1.8521 10.8227 23 1 11.5898 4.2592 10.7860 24 1 9.6568 2.8082 10.9865 25 6 9.2351 3.1344 6.1193 26 6 7.8335 2.8327 5.5823 27 6 7.9170 1.7340 4.5184 28 1 8.5371 2.0555 3.6815 29 7 3.7543 1.2325 3.1743 30 7 2.6730 1.1351 2.4821 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4026 -0.9314 36 1 4.9065 1.7383 0.1851 37 1 5.3768 1.6136 5.7847 38 1 4.6729 0.6052 4.4956 39 1 5.5448 -0.7351 6.4456 40 1 6.3250 -1.1496 4.9004 41 1 7.4514 0.7597 7.0002 42 1 8.0001 -0.9106 6.7204 43 1 10.2483 -0.1042 6.2566 44 1 10.5708 0.9877 4.8870 45 1 11.6019 4.7281 8.2271 46 1 9.8529 3.5435 5.3199 47 1 9.1671 3.8525 6.9365 48 1 7.4122 3.7354 5.1396 49 1 7.1958 2.4979 6.4005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021684177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:40 Heat of formation + Delta-G solvation = 100.916875 kcal Electronic energy + Delta-G solvation = -31081.055070 eV Core-core repulsion = 27046.188603 eV Total energy + Delta-G solvation = -4034.866466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.31160 -41.49744 -39.43031 -37.24539 -36.88027 -34.54187 -33.77725 -33.70632 -32.35597 -31.39769 -31.26026 -28.19985 -27.23007 -26.59616 -24.69336 -23.84881 -23.46671 -23.22260 -22.75330 -21.34045 -20.60836 -19.46609 -18.55428 -18.47646 -17.59297 -17.12872 -17.05784 -16.70822 -16.21250 -16.09655 -15.94270 -15.59805 -15.54439 -15.13035 -15.11327 -14.72072 -14.50089 -14.22570 -14.11436 -13.86259 -13.57390 -13.48412 -13.09762 -12.99771 -12.94942 -12.67153 -12.54579 -12.42051 -12.39970 -12.17513 -11.99148 -11.75375 -11.61755 -11.41947 -11.40244 -11.31135 -11.09306 -10.73864 -10.56534 -10.52004 -10.31583 -9.52646 -8.64267 -7.87059 -5.33448 0.14287 0.58398 0.79053 1.48708 1.51311 1.57938 1.59391 1.93393 2.19334 2.53294 3.10202 3.28395 3.39139 3.63940 3.73608 3.82184 3.85078 3.95813 3.96402 4.06913 4.12528 4.14934 4.27909 4.32924 4.43197 4.49509 4.55301 4.55652 4.63786 4.81151 4.86114 4.91272 4.95045 4.95499 5.00546 5.10463 5.13248 5.19550 5.28256 5.37714 5.39990 5.41288 5.58549 5.58874 5.64052 5.67923 5.69376 5.72417 6.41321 6.43234 6.84446 7.10742 7.15512 7.88044 8.42787 9.20183 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.026675 B = 0.002392 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.411037 B =11702.940324 C =11953.409675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.197 4.197 3 C 0.141 3.859 4 N -0.344 5.344 5 C 0.112 3.888 6 C -0.120 4.120 7 C 0.597 3.403 8 O -0.576 6.576 9 N -0.589 5.589 10 C 0.085 3.915 11 C -0.122 4.122 12 C -0.101 4.101 13 C -0.099 4.099 14 H 0.072 0.928 15 C 0.155 3.845 16 N -0.593 5.593 17 C -0.261 4.261 18 H 0.069 0.931 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.277 1.277 25 C 0.182 3.818 26 C -0.129 4.129 27 C 0.163 3.837 28 H 0.074 0.926 29 N -0.221 5.221 30 N -0.081 5.081 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.237 0.763 37 H 0.061 0.939 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.002 0.998 45 H 0.250 0.750 46 H -0.004 1.004 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.250 -8.551 -17.686 30.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.216 4.216 3 C 0.023 3.977 4 N -0.128 5.128 5 C -0.046 4.046 6 C -0.259 4.259 7 C 0.384 3.616 8 O -0.456 6.456 9 N -0.319 5.319 10 C -0.037 4.037 11 C -0.160 4.160 12 C -0.139 4.139 13 C -0.120 4.120 14 H 0.090 0.910 15 C 0.028 3.972 16 N -0.315 5.315 17 C -0.391 4.391 18 H 0.086 0.914 19 C -0.242 4.242 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.200 1.200 23 H -0.223 1.223 24 H -0.203 1.203 25 C 0.055 3.945 26 C -0.169 4.169 27 C 0.060 3.940 28 H 0.092 0.908 29 N -0.094 5.094 30 N -0.060 5.060 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.253 0.747 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.020 0.980 45 H 0.059 0.941 46 H 0.014 0.986 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.918 -8.514 -17.097 30.608 hybrid contribution 1.433 0.691 0.317 1.622 sum -22.485 -7.823 -16.779 29.126 Atomic orbital electron populations 1.24203 0.95350 1.03744 0.94747 1.22862 0.96709 0.97254 1.04736 1.21614 0.92165 0.98569 0.85307 1.50810 1.06874 1.46266 1.08886 1.23819 0.84838 0.95529 1.00395 1.21326 0.94165 1.18442 0.91971 1.17181 0.85643 0.76845 0.81895 1.90762 1.52081 1.50496 1.52278 1.48277 1.12926 1.61339 1.09332 1.22577 0.93358 0.95258 0.92554 1.21881 0.96552 0.97031 1.00545 1.21401 0.94679 1.00771 0.97020 1.21645 0.96433 0.95984 0.97893 0.90951 1.20378 0.93492 0.91117 0.92233 1.43468 1.68131 1.09218 1.10691 1.19366 1.33357 0.96537 0.89800 0.91377 1.25845 0.98095 0.98063 1.02225 1.70215 1.44619 1.07423 1.35504 0.85389 0.77957 0.76513 0.80866 1.19982 1.22324 1.20291 1.20452 0.89334 0.88864 0.95828 1.22306 0.99143 0.97395 0.98063 1.20997 0.81983 0.95316 0.95693 0.90800 1.74340 0.96790 1.11369 1.26919 1.81934 1.16969 1.22128 0.84996 0.86702 0.86908 0.87243 0.86377 0.83403 0.74722 0.92100 0.84973 0.89006 0.91663 0.92535 0.91744 0.92366 0.97986 0.94109 0.98613 0.92968 0.92922 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 14.32 67.78 0.97 0.23 16 2 C -0.20 -1.36 9.72 25.64 0.25 -1.11 16 3 C 0.14 0.76 6.98 85.63 0.60 1.36 16 4 N -0.34 -5.06 3.68 -350.84 -1.29 -6.35 16 5 C 0.11 1.90 11.28 83.85 0.95 2.84 16 6 C -0.12 -3.07 6.71 40.82 0.27 -2.79 16 7 C 0.60 19.32 7.69 86.69 0.67 19.99 16 8 O -0.58 -21.54 16.33 -4.01 -0.07 -21.61 16 9 N -0.59 -19.28 2.66 -798.46 -2.13 -21.40 16 10 C 0.09 2.41 5.63 86.35 0.49 2.89 16 11 C -0.12 -3.18 6.08 30.68 0.19 -3.00 16 12 C -0.10 -3.26 4.86 30.58 0.15 -3.11 16 13 C -0.10 -3.55 2.49 -11.02 -0.03 -3.57 16 14 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.16 6.72 5.75 86.74 0.50 7.22 16 16 N -0.59 -30.10 2.57 -706.97 -1.82 -31.91 16 17 C -0.26 -14.29 9.50 84.03 0.80 -13.50 16 18 H 0.07 3.62 7.90 -2.91 -0.02 3.60 16 19 C -0.05 -2.60 4.83 84.86 0.41 -2.19 16 20 N -0.93 -56.12 11.55 21.65 0.25 -55.87 16 21 Si 0.96 45.11 29.60 68.60 2.03 47.14 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 C 0.18 9.12 5.30 86.32 0.46 9.58 16 26 C -0.13 -5.29 5.02 30.68 0.15 -5.13 16 27 C 0.16 6.13 2.64 44.79 0.12 6.25 16 28 H 0.07 3.11 7.06 -2.38 -0.02 3.10 16 29 N -0.22 -5.72 8.78 -49.99 -0.44 -6.16 16 30 N -0.08 -1.80 13.63 37.02 0.50 -1.29 16 31 H 0.11 0.31 7.84 -2.91 -0.02 0.29 16 32 H 0.11 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.12 0.33 7.79 -2.39 -0.02 0.31 16 35 H 0.15 -0.19 8.08 -2.39 -0.02 -0.20 16 36 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.06 1.79 7.27 -2.39 -0.02 1.77 16 38 H 0.13 3.56 4.07 -41.46 -0.17 3.39 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 2.11 6.16 -2.38 -0.01 2.10 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 2.45 7.85 -2.39 -0.02 2.43 16 44 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 46 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.05 2.91 6.33 -2.39 -0.02 2.89 16 48 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 49 H 0.07 2.74 5.33 -2.38 -0.01 2.72 16 Total: -1.00 -73.33 384.10 4.78 -68.55 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.80 Total: 12.94 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.93 Total: 15.96 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -4.92 Total: -122.99 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.07 Total: -21.61 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.33 4.78 -68.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021684177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.470 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds