Wall clock time and date at job start Wed Apr 1 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29111 * 126.00462 * 2 1 4 4 N 1.29013 * 110.25644 * 179.97438 * 3 2 1 5 5 C 1.32910 * 108.63857 * 359.97438 * 4 3 2 6 6 C 1.34392 * 126.00603 * 180.02562 * 2 1 3 7 7 C 1.50532 * 129.25657 * 0.12970 * 6 2 1 8 8 C 1.53442 * 108.32333 * 163.56571 * 7 6 2 9 9 H 1.08992 * 109.45700 * 289.70127 * 8 7 6 10 10 C 1.50702 * 109.45533 * 169.73536 * 8 7 6 11 11 O 1.21284 * 119.99989 * 343.50619 * 10 8 7 12 12 N 1.34776 * 120.00144 * 163.50370 * 10 8 7 13 13 C 1.47158 * 120.70898 * 185.52553 * 12 10 8 14 14 C 1.55898 * 107.94739 * 132.45926 * 13 12 10 15 15 H 1.09003 * 112.45078 * 181.84669 * 14 13 12 16 16 C 1.54542 * 108.43922 * 307.12833 * 14 13 12 17 17 C 1.53734 * 104.95772 * 88.29146 * 16 14 13 18 18 C 1.54554 * 104.94932 * 359.97438 * 17 16 14 19 19 H 1.08998 * 112.18115 * 146.28229 * 18 17 16 20 20 C 1.47165 * 120.70876 * 5.55037 * 12 10 8 21 21 N 1.48303 * 106.17927 * 58.77855 * 14 13 12 22 22 C 1.36938 * 128.07862 * 106.44291 * 21 14 13 23 23 H 1.07996 * 119.99876 * 165.57977 * 22 21 14 24 24 C 1.38815 * 119.99786 * 345.58891 * 22 21 14 25 25 N 1.31616 * 119.99744 * 352.59901 * 24 22 21 26 26 Si 1.86792 * 119.99950 * 172.60651 * 24 22 21 27 27 H 1.48507 * 109.47190 * 269.99516 * 26 24 22 28 28 H 1.48504 * 109.47207 * 29.99354 * 26 24 22 29 29 H 1.48503 * 109.47213 * 149.99561 * 26 24 22 30 30 C 1.53113 * 109.55465 * 49.71284 * 8 7 6 31 31 C 1.50601 * 129.16544 * 180.21910 * 5 4 3 32 32 H 1.09004 * 109.47173 * 269.97503 * 1 2 3 33 33 H 1.09000 * 109.47558 * 29.98125 * 1 2 3 34 34 H 1.09005 * 109.47177 * 149.98317 * 1 2 3 35 35 H 1.08991 * 109.69966 * 43.85508 * 7 6 2 36 36 H 1.09005 * 109.72257 * 283.28463 * 7 6 2 37 37 H 1.09006 * 109.74976 * 252.40945 * 13 12 10 38 38 H 1.08998 * 109.75372 * 13.09866 * 13 12 10 39 39 H 1.09003 * 110.36783 * 207.00792 * 16 14 13 40 40 H 1.08997 * 110.36767 * 329.21121 * 16 14 13 41 41 H 1.08993 * 110.41832 * 241.06891 * 17 16 14 42 42 H 1.08999 * 110.20985 * 118.81642 * 17 16 14 43 43 H 1.09000 * 109.75111 * 107.58191 * 20 12 10 44 44 H 1.09008 * 109.74772 * 346.85326 * 20 12 10 45 45 H 0.97006 * 119.99915 * 180.02562 * 25 24 22 46 46 H 1.08996 * 109.45463 * 49.96787 * 30 8 7 47 47 H 1.08995 * 109.44873 * 169.90299 * 30 8 7 48 48 H 1.08997 * 109.68677 * 283.08742 * 31 5 4 49 49 H 1.09000 * 109.68603 * 43.61973 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8721 -2.5430 -0.0038 8 6 3.1013 -3.3642 -0.4151 9 1 3.3139 -3.1956 -1.4707 10 6 2.8266 -4.8281 -0.1858 11 8 1.9037 -5.1680 0.5239 12 7 3.6065 -5.7596 -0.7694 13 6 3.2816 -7.1903 -0.6554 14 6 3.3768 -7.8194 -2.0787 15 1 3.1172 -8.8780 -2.0841 16 6 2.5006 -6.9860 -3.0411 17 6 3.4280 -5.8757 -3.5612 18 6 4.7853 -6.1327 -2.8681 19 1 5.6292 -5.8655 -3.5040 20 6 4.8015 -5.3677 -1.5337 21 7 4.7644 -7.5801 -2.5442 22 6 5.7860 -8.4852 -2.6546 23 1 6.6708 -8.2344 -3.2208 24 6 5.6843 -9.7252 -2.0389 25 7 4.6763 -9.9781 -1.2312 26 14 6.9779 -11.0347 -2.3565 27 1 6.5725 -11.8582 -3.5239 28 1 8.2823 -10.3835 -2.6393 29 1 7.1075 -11.9033 -1.1590 30 6 4.3086 -2.9344 0.4229 31 6 4.7468 -1.5241 0.0069 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3634 0.8901 -0.5135 34 1 -0.3634 -0.8899 -0.5141 35 1 1.0644 -2.7088 -0.7165 36 1 1.5487 -2.8405 0.9938 37 1 3.9893 -7.6764 0.0162 38 1 2.2684 -7.3085 -0.2712 39 1 2.1525 -7.6042 -3.8686 40 1 1.6531 -6.5566 -2.5068 41 1 3.0404 -4.8956 -3.2838 42 1 3.5343 -5.9502 -4.6434 43 1 5.6991 -5.6258 -0.9718 44 1 4.7813 -4.2946 -1.7241 45 1 4.6054 -10.8445 -0.8006 46 1 4.0362 -2.9338 1.4783 47 1 5.1299 -3.6324 0.2607 48 1 5.1844 -1.5545 -0.9910 49 1 5.4795 -1.1421 0.7177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029441568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:28 Heat of formation + Delta-G solvation = 97.385534 kcal Electronic energy + Delta-G solvation = -32021.122895 eV Core-core repulsion = 27986.103298 eV Total energy + Delta-G solvation = -4035.019597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.54144 -40.32367 -38.28289 -36.51455 -35.05689 -33.86011 -32.45157 -30.97556 -30.72445 -30.10862 -29.30455 -28.06040 -26.42999 -24.79945 -23.91415 -23.64135 -22.94089 -21.56029 -20.38136 -19.77139 -19.33035 -18.49628 -17.55683 -17.17011 -16.77335 -16.19864 -15.57833 -15.13333 -14.85210 -14.48280 -14.43742 -14.06620 -14.01188 -13.74974 -13.55373 -13.35355 -13.20081 -13.07326 -13.02744 -12.78275 -12.29738 -11.98900 -11.87715 -11.81932 -11.65596 -11.53365 -11.25833 -11.19105 -10.98641 -10.89485 -10.84668 -10.66083 -10.39554 -10.11782 -10.09034 -9.91170 -9.73009 -9.61845 -9.29700 -8.95705 -8.82204 -8.11817 -6.89522 -5.88010 -3.24900 1.41174 2.13999 2.41489 2.97167 3.32428 3.38147 3.40131 3.45186 4.01878 4.25308 4.36540 4.43104 4.59863 4.64348 4.69841 4.75081 4.93294 4.99464 5.06269 5.18493 5.27253 5.29570 5.32940 5.44774 5.55251 5.59202 5.68245 5.70993 5.74174 5.76664 5.83295 5.89549 5.90481 6.04354 6.13352 6.17149 6.25626 6.33094 6.39899 6.46963 6.57951 6.62723 6.73659 6.81054 6.92173 7.23886 7.45458 7.65280 8.01070 8.09763 8.37234 8.59929 9.00852 9.62817 10.38121 11.23863 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.002857 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.681357 B = 9799.611356 C =10122.525919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.285 5.285 3 N -0.102 5.102 4 N -0.262 5.262 5 C -0.020 4.020 6 C -0.012 4.012 7 C -0.026 4.026 8 C -0.101 4.101 9 H 0.099 0.901 10 C 0.513 3.487 11 O -0.559 6.559 12 N -0.587 5.587 13 C 0.112 3.888 14 C 0.166 3.834 15 H 0.124 0.876 16 C -0.135 4.135 17 C -0.122 4.122 18 C 0.133 3.867 19 H 0.078 0.922 20 C 0.092 3.908 21 N -0.585 5.585 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.003 4.003 25 N -0.913 5.913 26 Si 0.913 3.087 27 H -0.289 1.289 28 H -0.281 1.281 29 H -0.291 1.291 30 C -0.112 4.112 31 C -0.030 4.030 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.255 0.745 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 15.259 0.441 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.077 5.077 3 N -0.080 5.080 4 N -0.127 5.127 5 C -0.160 4.160 6 C -0.146 4.146 7 C -0.065 4.065 8 C -0.123 4.123 9 H 0.117 0.883 10 C 0.300 3.700 11 O -0.439 6.439 12 N -0.317 5.317 13 C -0.011 4.011 14 C 0.059 3.941 15 H 0.142 0.858 16 C -0.175 4.175 17 C -0.162 4.162 18 C 0.024 3.976 19 H 0.096 0.904 20 C -0.033 4.033 21 N -0.306 5.306 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.200 4.200 25 N -0.560 5.560 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.207 1.207 29 H -0.217 1.217 30 C -0.150 4.150 31 C -0.069 4.069 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.861 16.377 0.876 17.777 hybrid contribution 0.387 -1.683 -0.130 1.732 sum -6.473 14.693 0.746 16.073 Atomic orbital electron populations 1.22280 0.72796 1.05933 1.05133 1.46806 1.09157 1.04634 1.47128 1.78560 0.96151 1.11312 1.21981 1.74775 1.09592 1.12018 1.16284 1.21708 0.95072 0.91272 1.07985 1.21874 0.91247 0.92284 1.09171 1.19956 0.97751 0.84497 1.04332 1.21297 0.95987 0.92667 1.02306 0.88280 1.20192 0.82491 0.87182 0.80166 1.90644 1.32040 1.82321 1.38884 1.48184 1.25625 1.07714 1.50195 1.22814 1.00283 0.77211 1.00786 1.22408 0.83729 0.99571 0.88440 0.85846 1.22511 0.97791 0.97542 0.99616 1.22380 0.96756 0.97658 0.99360 1.21956 0.95973 0.86987 0.92713 0.90433 1.22618 0.87554 0.98073 0.95102 1.45193 1.07833 1.01769 1.75800 1.19005 0.96451 0.93907 1.26121 0.90530 1.24829 0.98514 0.98699 0.97946 1.69799 1.31402 1.22795 1.31962 0.86117 0.80750 0.81624 0.77196 1.21600 1.20658 1.21708 1.21668 0.97084 0.96037 1.00250 1.19956 0.92460 0.91223 1.03246 0.88952 0.88011 0.88190 0.89891 0.88195 0.90405 0.91542 0.92816 0.92983 0.93114 0.92622 0.91339 0.91285 0.93439 0.90708 0.89496 0.89547 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.27 59.85 0.67 1.14 16 2 N -0.29 -3.12 3.73 -64.00 -0.24 -3.36 16 3 N -0.10 -1.40 13.19 60.35 0.80 -0.61 16 4 N -0.26 -3.84 12.40 33.17 0.41 -3.43 16 5 C -0.02 -0.26 7.11 -83.12 -0.59 -0.85 16 6 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 7 C -0.03 -0.28 4.89 -27.74 -0.14 -0.42 16 8 C -0.10 -1.18 1.64 -91.48 -0.15 -1.33 16 9 H 0.10 1.08 6.90 -51.93 -0.36 0.72 16 10 C 0.51 8.13 6.90 -10.98 -0.08 8.06 16 11 O -0.56 -10.59 15.30 5.55 0.08 -10.50 16 12 N -0.59 -10.03 2.29 -170.29 -0.39 -10.42 16 13 C 0.11 2.31 5.92 -2.13 -0.01 2.30 16 14 C 0.17 3.56 3.24 -64.58 -0.21 3.35 16 15 H 0.12 3.06 6.21 -51.93 -0.32 2.74 16 16 C -0.14 -2.44 6.19 -25.54 -0.16 -2.60 16 17 C -0.12 -1.96 6.18 -25.53 -0.16 -2.12 16 18 C 0.13 2.33 4.27 -65.67 -0.28 2.05 16 19 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.09 1.42 4.67 -3.25 -0.02 1.41 16 21 N -0.59 -13.04 2.78 -151.42 -0.42 -13.46 16 22 C -0.23 -5.67 10.38 -15.06 -0.16 -5.83 16 23 H 0.08 1.87 7.84 -52.49 -0.41 1.46 16 24 C 0.00 -0.07 5.44 -17.43 -0.09 -0.17 16 25 N -0.91 -24.29 10.44 55.49 0.58 -23.71 16 26 Si 0.91 20.66 29.56 -169.99 -5.02 15.63 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 C -0.11 -1.19 4.80 -26.45 -0.13 -1.32 16 31 C -0.03 -0.30 6.30 -27.71 -0.17 -0.47 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.42 7.71 -51.93 -0.40 0.01 16 35 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 36 H 0.10 1.17 7.56 -51.93 -0.39 0.78 16 37 H 0.08 1.85 7.97 -51.93 -0.41 1.44 16 38 H 0.07 1.39 7.16 -51.93 -0.37 1.02 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.91 7.88 -51.93 -0.41 0.50 16 41 H 0.05 0.72 7.86 -51.93 -0.41 0.31 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.83 5.22 -51.92 -0.27 0.56 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 47 H 0.09 0.91 6.54 -51.93 -0.34 0.57 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -31.24 375.25 -8.22 -39.46 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.45 Total: 2.24 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.22 Total: 2.51 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.74 Total: -54.99 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.24 -8.22 -39.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029441568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.845 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds