Wall clock time and date at job start Wed Apr 1 2020 04:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29111 * 126.00462 * 2 1 4 4 N 1.29013 * 110.25644 * 179.97438 * 3 2 1 5 5 C 1.32910 * 108.63857 * 359.97438 * 4 3 2 6 6 C 1.34392 * 126.00603 * 180.02562 * 2 1 3 7 7 C 1.50532 * 129.25657 * 0.12970 * 6 2 1 8 8 C 1.53442 * 108.32333 * 163.56571 * 7 6 2 9 9 H 1.08992 * 109.45700 * 289.70127 * 8 7 6 10 10 C 1.50702 * 109.45533 * 169.73536 * 8 7 6 11 11 O 1.21284 * 119.99989 * 343.50619 * 10 8 7 12 12 N 1.34776 * 120.00144 * 163.50370 * 10 8 7 13 13 C 1.47158 * 120.70898 * 185.52553 * 12 10 8 14 14 C 1.55898 * 107.94739 * 132.45926 * 13 12 10 15 15 H 1.09003 * 112.45078 * 181.84669 * 14 13 12 16 16 C 1.54542 * 108.43922 * 307.12833 * 14 13 12 17 17 C 1.53734 * 104.95772 * 88.29146 * 16 14 13 18 18 C 1.54554 * 104.94932 * 359.97438 * 17 16 14 19 19 H 1.08998 * 112.18115 * 146.28229 * 18 17 16 20 20 C 1.47165 * 120.70876 * 5.55037 * 12 10 8 21 21 N 1.48303 * 106.17927 * 58.77855 * 14 13 12 22 22 C 1.36938 * 128.07862 * 106.44291 * 21 14 13 23 23 H 1.07996 * 119.99876 * 165.57977 * 22 21 14 24 24 C 1.38815 * 119.99786 * 345.58891 * 22 21 14 25 25 N 1.31616 * 119.99744 * 352.59901 * 24 22 21 26 26 Si 1.86792 * 119.99950 * 172.60651 * 24 22 21 27 27 H 1.48507 * 109.47190 * 269.99516 * 26 24 22 28 28 H 1.48504 * 109.47207 * 29.99354 * 26 24 22 29 29 H 1.48503 * 109.47213 * 149.99561 * 26 24 22 30 30 C 1.53113 * 109.55465 * 49.71284 * 8 7 6 31 31 C 1.50601 * 129.16544 * 180.21910 * 5 4 3 32 32 H 1.09004 * 109.47173 * 269.97503 * 1 2 3 33 33 H 1.09000 * 109.47558 * 29.98125 * 1 2 3 34 34 H 1.09005 * 109.47177 * 149.98317 * 1 2 3 35 35 H 1.08991 * 109.69966 * 43.85508 * 7 6 2 36 36 H 1.09005 * 109.72257 * 283.28463 * 7 6 2 37 37 H 1.09006 * 109.74976 * 252.40945 * 13 12 10 38 38 H 1.08998 * 109.75372 * 13.09866 * 13 12 10 39 39 H 1.09003 * 110.36783 * 207.00792 * 16 14 13 40 40 H 1.08997 * 110.36767 * 329.21121 * 16 14 13 41 41 H 1.08993 * 110.41832 * 241.06891 * 17 16 14 42 42 H 1.08999 * 110.20985 * 118.81642 * 17 16 14 43 43 H 1.09000 * 109.75111 * 107.58191 * 20 12 10 44 44 H 1.09008 * 109.74772 * 346.85326 * 20 12 10 45 45 H 0.97006 * 119.99915 * 180.02562 * 25 24 22 46 46 H 1.08996 * 109.45463 * 49.96787 * 30 8 7 47 47 H 1.08995 * 109.44873 * 169.90299 * 30 8 7 48 48 H 1.08997 * 109.68677 * 283.08742 * 31 5 4 49 49 H 1.09000 * 109.68603 * 43.61973 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8721 -2.5430 -0.0038 8 6 3.1013 -3.3642 -0.4151 9 1 3.3139 -3.1956 -1.4707 10 6 2.8266 -4.8281 -0.1858 11 8 1.9037 -5.1680 0.5239 12 7 3.6065 -5.7596 -0.7694 13 6 3.2816 -7.1903 -0.6554 14 6 3.3768 -7.8194 -2.0787 15 1 3.1172 -8.8780 -2.0841 16 6 2.5006 -6.9860 -3.0411 17 6 3.4280 -5.8757 -3.5612 18 6 4.7853 -6.1327 -2.8681 19 1 5.6292 -5.8655 -3.5040 20 6 4.8015 -5.3677 -1.5337 21 7 4.7644 -7.5801 -2.5442 22 6 5.7860 -8.4852 -2.6546 23 1 6.6708 -8.2344 -3.2208 24 6 5.6843 -9.7252 -2.0389 25 7 4.6763 -9.9781 -1.2312 26 14 6.9779 -11.0347 -2.3565 27 1 6.5725 -11.8582 -3.5239 28 1 8.2823 -10.3835 -2.6393 29 1 7.1075 -11.9033 -1.1590 30 6 4.3086 -2.9344 0.4229 31 6 4.7468 -1.5241 0.0069 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3634 0.8901 -0.5135 34 1 -0.3634 -0.8899 -0.5141 35 1 1.0644 -2.7088 -0.7165 36 1 1.5487 -2.8405 0.9938 37 1 3.9893 -7.6764 0.0162 38 1 2.2684 -7.3085 -0.2712 39 1 2.1525 -7.6042 -3.8686 40 1 1.6531 -6.5566 -2.5068 41 1 3.0404 -4.8956 -3.2838 42 1 3.5343 -5.9502 -4.6434 43 1 5.6991 -5.6258 -0.9718 44 1 4.7813 -4.2946 -1.7241 45 1 4.6054 -10.8445 -0.8006 46 1 4.0362 -2.9338 1.4783 47 1 5.1299 -3.6324 0.2607 48 1 5.1844 -1.5545 -0.9910 49 1 5.4795 -1.1421 0.7177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029441568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:27 Heat of formation + Delta-G solvation = 78.735685 kcal Electronic energy + Delta-G solvation = -32021.931613 eV Core-core repulsion = 27986.103298 eV Total energy + Delta-G solvation = -4035.828315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.41254 -41.66663 -39.64155 -37.56180 -35.85532 -35.40503 -34.14472 -32.31313 -31.53716 -31.31251 -30.91441 -28.72450 -27.87795 -26.06580 -25.45645 -24.82731 -24.04774 -22.36873 -21.54519 -21.17762 -20.67953 -19.86986 -18.78043 -18.01487 -17.92291 -17.48209 -16.92861 -16.63361 -16.36170 -15.70813 -15.47979 -15.31328 -14.86409 -14.78704 -14.60212 -14.56011 -14.44785 -14.31069 -14.09149 -13.62278 -13.51766 -13.27111 -13.20294 -13.02606 -12.98522 -12.81140 -12.67250 -12.53725 -12.53243 -12.11692 -11.94851 -11.93707 -11.79116 -11.54934 -11.45076 -11.37541 -11.06920 -10.91966 -10.78937 -10.50919 -9.84143 -9.65582 -8.64646 -7.80374 -5.16179 0.55746 1.44942 1.49581 1.50669 1.52148 1.59300 1.71748 2.15624 2.53812 3.15013 3.38091 3.39743 3.55348 3.70094 3.75196 3.81139 3.91410 4.10669 4.13361 4.20249 4.24557 4.26790 4.30548 4.35770 4.42282 4.50413 4.52768 4.59002 4.66069 4.69836 4.79098 4.91443 4.93448 4.94015 5.00728 5.06194 5.08956 5.12843 5.16145 5.21840 5.22892 5.34272 5.37325 5.46957 5.59486 5.62742 5.63974 5.90538 6.28869 6.68874 7.10985 7.28377 7.47055 7.78245 8.55971 9.29975 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.002857 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.681357 B = 9799.611356 C =10122.525919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.277 5.277 3 N -0.127 5.127 4 N -0.297 5.297 5 C -0.031 4.031 6 C -0.012 4.012 7 C -0.018 4.018 8 C -0.090 4.090 9 H 0.122 0.878 10 C 0.515 3.485 11 O -0.591 6.591 12 N -0.589 5.589 13 C 0.130 3.870 14 C 0.162 3.838 15 H 0.081 0.919 16 C -0.127 4.127 17 C -0.111 4.111 18 C 0.125 3.875 19 H 0.093 0.907 20 C 0.098 3.902 21 N -0.607 5.607 22 C -0.226 4.226 23 H 0.082 0.918 24 C -0.058 4.058 25 N -0.939 5.939 26 Si 0.968 3.032 27 H -0.292 1.292 28 H -0.270 1.270 29 H -0.303 1.303 30 C -0.106 4.106 31 C -0.024 4.024 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.117 0.883 45 H 0.245 0.755 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 17.720 -0.962 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.070 5.070 3 N -0.105 5.105 4 N -0.160 5.160 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.057 4.057 8 C -0.112 4.112 9 H 0.140 0.860 10 C 0.305 3.695 11 O -0.472 6.472 12 N -0.319 5.319 13 C 0.005 3.995 14 C 0.055 3.945 15 H 0.099 0.901 16 C -0.166 4.166 17 C -0.150 4.150 18 C 0.018 3.982 19 H 0.111 0.889 20 C -0.026 4.026 21 N -0.328 5.328 22 C -0.355 4.355 23 H 0.100 0.900 24 C -0.252 4.252 25 N -0.587 5.587 26 Si 0.798 3.202 27 H -0.220 1.220 28 H -0.195 1.195 29 H -0.230 1.230 30 C -0.145 4.145 31 C -0.063 4.063 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.135 0.865 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.123 0.877 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.883 18.912 -0.548 20.133 hybrid contribution 0.312 -2.424 0.343 2.468 sum -6.571 16.488 -0.206 17.750 Atomic orbital electron populations 1.22741 0.70159 1.07730 1.06714 1.47181 1.10647 1.03846 1.45281 1.78487 0.96381 1.12368 1.23222 1.74734 1.10317 1.13236 1.17719 1.22155 0.96354 0.90971 1.07709 1.21921 0.91134 0.92527 1.09108 1.19876 0.97720 0.83810 1.04306 1.21282 0.96939 0.89109 1.03849 0.85994 1.20878 0.81312 0.88540 0.78801 1.90639 1.33398 1.83144 1.40055 1.48152 1.26561 1.06266 1.50957 1.22246 0.98250 0.79580 0.99408 1.22218 0.84522 0.98066 0.89743 0.90117 1.22386 0.97762 0.97811 0.98621 1.22331 0.94885 0.98058 0.99746 1.22270 0.97606 0.84312 0.94043 0.88938 1.22631 0.86255 1.00373 0.93338 1.45377 1.07544 1.03960 1.75940 1.19314 0.96945 0.94398 1.24808 0.90025 1.25484 1.00291 1.00656 0.98736 1.70005 1.32967 1.22381 1.33322 0.85237 0.79425 0.79427 0.76132 1.21982 1.19459 1.22969 1.21627 0.96627 0.96607 0.99621 1.20001 0.91783 0.89951 1.04534 0.87460 0.86589 0.86138 0.88258 0.89155 0.94659 0.92701 0.93107 0.92315 0.90038 0.91521 0.92725 0.86537 0.94572 0.91576 0.89032 0.87669 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.27 127.77 1.44 2.01 16 2 N -0.28 -5.37 3.73 -356.40 -1.33 -6.69 16 3 N -0.13 -3.28 13.19 37.02 0.49 -2.79 16 4 N -0.30 -8.21 12.40 -48.98 -0.61 -8.82 16 5 C -0.03 -0.69 7.11 41.75 0.30 -0.40 16 6 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 7 C -0.02 -0.32 4.89 29.94 0.15 -0.18 16 8 C -0.09 -1.79 1.64 -11.35 -0.02 -1.81 16 9 H 0.12 1.94 6.90 -2.39 -0.02 1.92 16 10 C 0.52 15.21 6.90 87.66 0.60 15.82 16 11 O -0.59 -21.75 15.30 -3.04 -0.05 -21.79 16 12 N -0.59 -19.24 2.29 -811.06 -1.86 -21.09 16 13 C 0.13 5.49 5.92 87.26 0.52 6.01 16 14 C 0.16 7.08 3.24 46.17 0.15 7.23 16 15 H 0.08 4.23 6.21 -2.39 -0.01 4.21 16 16 C -0.13 -4.38 6.19 31.37 0.19 -4.19 16 17 C -0.11 -3.14 6.18 31.37 0.19 -2.95 16 18 C 0.12 4.03 4.27 45.45 0.19 4.23 16 19 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 20 C 0.10 2.74 4.67 86.53 0.40 3.14 16 21 N -0.61 -26.85 2.78 -632.97 -1.76 -28.61 16 22 C -0.23 -11.30 10.38 84.03 0.87 -10.43 16 23 H 0.08 3.91 7.84 -2.91 -0.02 3.89 16 24 C -0.06 -3.03 5.44 84.86 0.46 -2.57 16 25 N -0.94 -52.31 10.44 21.65 0.23 -52.09 16 26 Si 0.97 43.36 29.56 68.60 2.03 45.39 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 30 C -0.11 -1.93 4.80 30.78 0.15 -1.78 16 31 C -0.02 -0.40 6.30 29.96 0.19 -0.21 16 32 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.12 0.56 7.71 -2.38 -0.02 0.55 16 35 H 0.10 1.53 7.87 -2.39 -0.02 1.51 16 36 H 0.09 1.91 7.56 -2.38 -0.02 1.89 16 37 H 0.03 1.77 7.97 -2.38 -0.02 1.75 16 38 H 0.05 2.39 7.16 -2.39 -0.02 2.38 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.94 7.88 -2.39 -0.02 1.92 16 41 H 0.08 1.83 7.86 -2.39 -0.02 1.81 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.12 2.17 5.22 -2.38 -0.01 2.16 16 45 H 0.24 13.60 8.31 -92.70 -0.77 12.83 16 46 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 47 H 0.09 1.61 6.54 -2.39 -0.02 1.60 16 48 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.33 375.25 4.18 -67.15 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.96 Total: 15.38 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 6.07 Total: 13.97 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -4.84 Total: -120.10 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -71.33 4.18 -67.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029441568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.890 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds