Wall clock time and date at job start Wed Apr 1 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00565 * 2 1 4 4 N 1.46500 * 109.47319 * 124.99434 * 3 2 1 5 5 C 1.34816 * 126.59398 * 125.27424 * 4 3 2 6 6 C 1.36590 * 106.84218 * 180.15393 * 5 4 3 7 7 C 1.47519 * 125.77250 * 179.89704 * 6 5 4 8 8 O 1.21602 * 119.99753 * 7.57021 * 7 6 5 9 9 N 1.34777 * 120.00469 * 187.56860 * 7 6 5 10 10 C 1.46935 * 120.55481 * 185.86660 * 9 7 6 11 11 C 1.53340 * 108.68625 * 125.62833 * 10 9 7 12 12 C 1.52109 * 109.44546 * 53.30112 * 11 10 9 13 13 C 1.54393 * 110.50840 * 64.08748 * 12 11 10 14 14 C 1.54457 * 102.86915 * 83.33351 * 13 12 11 15 15 N 1.47087 * 107.29403 * 21.50239 * 14 13 12 16 16 C 1.36935 * 125.62385 * 180.96164 * 15 14 13 17 17 H 1.08004 * 120.00032 * 175.42602 * 16 15 14 18 18 C 1.38811 * 120.00730 * 355.43288 * 16 15 14 19 19 N 1.31613 * 120.00312 * 158.36548 * 18 16 15 20 20 Si 1.86801 * 119.99354 * 338.36737 * 18 16 15 21 21 H 1.48502 * 109.46809 * 185.86585 * 20 18 16 22 22 H 1.48491 * 109.47315 * 305.86270 * 20 18 16 23 23 H 1.48498 * 109.47480 * 65.86931 * 20 18 16 24 24 C 1.47572 * 108.74395 * 1.23553 * 15 14 13 25 25 C 1.52111 * 111.59761 * 300.69644 * 12 11 10 26 26 C 1.46931 * 120.54869 * 5.84252 * 9 7 6 27 27 N 1.34400 * 108.45734 * 359.63351 * 6 5 4 28 28 N 1.28757 * 109.52612 * 0.23070 * 27 6 5 29 29 H 1.07994 * 120.00302 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99473 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99936 * 179.97438 * 2 1 3 32 32 H 1.09009 * 109.46648 * 5.00330 * 3 2 1 33 33 H 1.09000 * 109.47369 * 245.00262 * 3 2 1 34 34 H 1.08006 * 126.57535 * 0.02562 * 5 4 3 35 35 H 1.08997 * 109.60436 * 5.86218 * 10 9 7 36 36 H 1.08998 * 109.60010 * 245.38605 * 10 9 7 37 37 H 1.09004 * 109.47572 * 293.31351 * 11 10 9 38 38 H 1.08997 * 109.47745 * 173.29237 * 11 10 9 39 39 H 1.08999 * 110.73349 * 324.99106 * 13 12 11 40 40 H 1.08993 * 110.73743 * 201.67649 * 13 12 11 41 41 H 1.08997 * 109.87777 * 262.08448 * 14 13 12 42 42 H 1.08995 * 109.88299 * 140.92674 * 14 13 12 43 43 H 0.96999 * 120.00144 * 5.01481 * 19 18 16 44 44 H 1.09001 * 110.37840 * 95.25679 * 24 15 14 45 45 H 1.09003 * 110.37287 * 217.60678 * 24 15 14 46 46 H 1.09007 * 109.46960 * 179.29293 * 25 12 11 47 47 H 1.08991 * 109.47572 * 299.30318 * 25 12 11 48 48 H 1.09001 * 109.60226 * 354.12814 * 26 9 7 49 49 H 1.08997 * 109.60481 * 114.60821 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3222 1.5546 1.0747 6 6 4.7901 1.4859 2.3561 7 6 6.1940 1.6654 2.7724 8 8 7.0256 2.0316 1.9643 9 7 6.5549 1.4234 4.0482 10 6 7.9187 1.7198 4.5077 11 6 7.8354 2.6316 5.7377 12 6 6.9230 1.9980 6.7769 13 6 7.5223 0.6687 7.2844 14 6 8.5137 1.1323 8.3743 15 7 8.0928 2.4738 8.8062 16 6 8.7227 3.2427 9.7481 17 1 8.3780 4.2474 9.9436 18 6 9.8044 2.7310 10.4516 19 7 10.6644 3.5479 11.0219 20 14 10.0394 0.8830 10.5887 21 1 11.1754 0.5948 11.5008 22 1 8.8019 0.2653 11.1291 23 1 10.3280 0.3196 9.2454 24 6 6.8758 2.8516 8.0618 25 6 5.5210 1.7760 6.2301 26 6 5.5909 0.8593 5.0028 27 7 3.7543 1.2330 3.1744 28 7 2.6730 1.1354 2.4822 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4025 -0.9314 34 1 4.9050 1.7480 0.1862 35 1 8.4701 2.2250 3.7147 36 1 8.4246 0.7918 4.7740 37 1 7.4337 3.6016 5.4446 38 1 8.8313 2.7633 6.1606 39 1 8.0463 0.1502 6.4815 40 1 6.7465 0.0344 7.7130 41 1 9.5225 1.1747 7.9638 42 1 8.4838 0.4445 9.2194 43 1 10.5039 4.5045 11.0132 44 1 5.9856 2.6155 8.6449 45 1 6.8973 3.9126 7.8130 46 1 4.9015 1.3105 6.9967 47 1 5.0866 2.7339 5.9440 48 1 4.6077 0.7974 4.5363 49 1 5.9169 -0.1351 5.3073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035235245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:24 Heat of formation + Delta-G solvation = 139.155727 kcal Electronic energy + Delta-G solvation = -30688.697891 eV Core-core repulsion = 26655.489586 eV Total energy + Delta-G solvation = -4033.208305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.60914 -40.27253 -38.63739 -36.56166 -35.95124 -33.46696 -32.98316 -31.64761 -31.17572 -30.57114 -28.95417 -27.76580 -27.09665 -24.40446 -23.63126 -22.98508 -22.61822 -22.40399 -20.95270 -20.40527 -20.02439 -18.50702 -17.75763 -17.02164 -16.65543 -16.37394 -16.07353 -15.82934 -15.32418 -15.22435 -15.10820 -14.76150 -14.25963 -14.01601 -13.75765 -13.58094 -13.35585 -13.13139 -13.08315 -12.86487 -12.66209 -12.36170 -12.15194 -12.10810 -11.73483 -11.58156 -11.16888 -11.10909 -10.93196 -10.85012 -10.81011 -10.39292 -10.25735 -10.20961 -10.12541 -9.92473 -9.65480 -9.57421 -9.40560 -8.85875 -8.53336 -8.43610 -6.97595 -6.23450 -3.08803 0.77890 1.15952 1.42772 1.95903 2.92638 3.12949 3.47787 3.56487 3.76888 3.80107 3.88075 4.04797 4.29997 4.35175 4.59787 4.68260 4.73946 4.89764 4.91628 4.94728 5.04934 5.15167 5.17890 5.21188 5.32592 5.45004 5.48970 5.61072 5.76545 5.79068 5.80686 5.82543 5.89109 5.91669 5.97584 6.05371 6.12708 6.22871 6.27616 6.38581 6.45118 6.49215 6.52698 6.66901 6.79037 6.89637 6.91145 7.35007 7.63588 7.76534 8.06958 8.41663 9.13904 9.67897 10.34875 11.27063 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.002273 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.079659 B =12314.306336 C =12644.541805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.184 4.184 3 C 0.151 3.849 4 N -0.358 5.358 5 C 0.091 3.909 6 C -0.093 4.093 7 C 0.601 3.399 8 O -0.546 6.546 9 N -0.588 5.588 10 C 0.111 3.889 11 C -0.111 4.111 12 C -0.072 4.072 13 C -0.123 4.123 14 C 0.116 3.884 15 N -0.611 5.611 16 C -0.321 4.321 17 H 0.076 0.924 18 C -0.026 4.026 19 N -0.928 5.928 20 Si 1.069 2.931 21 H -0.303 1.303 22 H -0.300 1.300 23 H -0.283 1.283 24 C 0.147 3.853 25 C -0.111 4.111 26 C 0.073 3.927 27 N -0.203 5.203 28 N -0.059 5.059 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.205 0.795 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.023 0.977 43 H 0.260 0.740 44 H 0.022 0.978 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.137 0.863 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.861 -7.888 -26.737 34.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.202 4.202 3 C 0.031 3.969 4 N -0.143 5.143 5 C -0.065 4.065 6 C -0.231 4.231 7 C 0.387 3.613 8 O -0.424 6.424 9 N -0.319 5.319 10 C -0.010 4.010 11 C -0.149 4.149 12 C -0.073 4.073 13 C -0.160 4.160 14 C -0.009 4.009 15 N -0.339 5.339 16 C -0.449 4.449 17 H 0.094 0.906 18 C -0.225 4.225 19 N -0.570 5.570 20 Si 0.904 3.096 21 H -0.231 1.231 22 H -0.229 1.229 23 H -0.210 1.210 24 C 0.021 3.979 25 C -0.149 4.149 26 C -0.051 4.051 27 N -0.076 5.076 28 N -0.038 5.038 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.222 0.778 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.153 0.847 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.494 -9.063 -25.553 33.393 hybrid contribution -0.488 1.347 -1.089 1.800 sum -19.982 -7.715 -26.642 34.185 Atomic orbital electron populations 1.24020 0.95471 1.02940 0.95955 1.22855 0.96382 0.97324 1.03668 1.21134 0.91968 0.98306 0.85542 1.50534 1.06702 1.48026 1.09057 1.23388 0.84561 0.97877 1.00670 1.21499 0.95377 1.15811 0.90454 1.16813 0.84659 0.77498 0.82350 1.90791 1.51067 1.48817 1.51717 1.47918 1.13304 1.61552 1.09134 1.21812 0.81981 0.99938 0.97291 1.21638 1.01557 0.97953 0.93730 1.21128 0.94334 0.96341 0.95542 1.22657 0.98801 0.96401 0.98186 1.21944 0.96876 0.87581 0.94465 1.44888 1.27961 1.15377 1.45663 1.20099 1.13233 0.96083 1.15463 0.90579 1.25747 0.92645 1.06652 0.97506 1.70929 1.31870 1.04318 1.49848 0.83859 0.74524 0.75635 0.75605 1.23139 1.22916 1.20997 1.21531 0.89864 0.96673 0.89791 1.21649 0.96419 1.00073 0.96772 1.22817 0.95742 0.96131 0.90379 1.74218 0.96566 1.10992 1.25776 1.82059 1.17291 1.21145 0.83344 0.87302 0.87842 0.86393 0.87915 0.86761 0.77819 0.89091 0.91007 0.91887 0.89458 0.91390 0.91592 0.93796 0.95940 0.92982 0.96028 0.93967 0.90636 0.91719 0.84660 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 14.32 29.01 0.42 -0.03 16 2 C -0.18 -0.69 9.72 -36.03 -0.35 -1.04 16 3 C 0.15 0.49 6.98 -5.19 -0.04 0.46 16 4 N -0.36 -2.65 3.68 -62.24 -0.23 -2.87 16 5 C 0.09 0.74 11.28 -16.84 -0.19 0.55 16 6 C -0.09 -1.07 6.73 -83.56 -0.56 -1.63 16 7 C 0.60 8.29 7.68 -12.48 -0.10 8.19 16 8 O -0.55 -8.63 16.30 5.28 0.09 -8.55 16 9 N -0.59 -8.00 2.96 -173.81 -0.51 -8.52 16 10 C 0.11 1.57 6.11 -3.63 -0.02 1.55 16 11 C -0.11 -1.77 4.87 -27.01 -0.13 -1.90 16 12 C -0.07 -1.18 0.55 -153.98 -0.08 -1.27 16 13 C -0.12 -2.07 4.92 -25.24 -0.12 -2.19 16 14 C 0.12 2.57 4.20 -2.96 -0.01 2.55 16 15 N -0.61 -15.20 3.34 -170.18 -0.57 -15.77 16 16 C -0.32 -9.40 10.51 -15.06 -0.16 -9.56 16 17 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 18 C -0.03 -0.79 5.48 -17.43 -0.10 -0.89 16 19 N -0.93 -29.77 13.70 55.49 0.76 -29.01 16 20 Si 1.07 27.51 24.60 -169.99 -4.18 23.32 16 21 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 22 H -0.30 -7.52 6.99 56.52 0.40 -7.13 16 23 H -0.28 -6.62 5.24 56.52 0.30 -6.32 16 24 C 0.15 3.01 6.16 -2.75 -0.02 2.99 16 25 C -0.11 -1.51 4.84 -27.01 -0.13 -1.64 16 26 C 0.07 0.91 6.04 -3.63 -0.02 0.89 16 27 N -0.20 -2.43 8.71 32.84 0.29 -2.15 16 28 N -0.06 -0.64 13.63 60.35 0.82 0.19 16 29 H 0.11 0.26 8.06 -52.49 -0.42 -0.16 16 30 H 0.10 0.21 7.84 -52.49 -0.41 -0.20 16 31 H 0.12 0.50 8.06 -52.48 -0.42 0.07 16 32 H 0.10 0.23 7.79 -51.92 -0.40 -0.18 16 33 H 0.11 0.05 8.08 -51.93 -0.42 -0.37 16 34 H 0.21 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.09 1.32 7.03 -51.93 -0.36 0.95 16 36 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.59 7.82 -51.93 -0.41 1.18 16 39 H 0.07 1.02 6.17 -51.93 -0.32 0.70 16 40 H 0.07 1.03 7.98 -51.93 -0.41 0.62 16 41 H 0.04 1.02 6.64 -51.93 -0.34 0.68 16 42 H 0.02 0.54 4.26 -51.93 -0.22 0.32 16 43 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 44 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 45 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 46 H 0.08 0.98 8.09 -51.92 -0.42 0.56 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.14 1.68 3.67 -120.40 -0.44 1.24 16 49 H 0.06 0.78 7.62 -51.93 -0.40 0.38 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -36.24 379.47 -6.98 -43.22 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.54 Total: -2.62 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.62 Total: -2.96 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.56 Total: -58.13 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 27.51 SS G_CDS: -4.18 Total: 23.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.24 -6.98 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035235245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.372 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds