Wall clock time and date at job start Wed Apr 1 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00565 * 2 1 4 4 N 1.46500 * 109.47319 * 124.99434 * 3 2 1 5 5 C 1.34816 * 126.59398 * 125.27424 * 4 3 2 6 6 C 1.36590 * 106.84218 * 180.15393 * 5 4 3 7 7 C 1.47519 * 125.77250 * 179.89704 * 6 5 4 8 8 O 1.21602 * 119.99753 * 7.57021 * 7 6 5 9 9 N 1.34777 * 120.00469 * 187.56860 * 7 6 5 10 10 C 1.46935 * 120.55481 * 185.86660 * 9 7 6 11 11 C 1.53340 * 108.68625 * 125.62833 * 10 9 7 12 12 C 1.52109 * 109.44546 * 53.30112 * 11 10 9 13 13 C 1.54393 * 110.50840 * 64.08748 * 12 11 10 14 14 C 1.54457 * 102.86915 * 83.33351 * 13 12 11 15 15 N 1.47087 * 107.29403 * 21.50239 * 14 13 12 16 16 C 1.36935 * 125.62385 * 180.96164 * 15 14 13 17 17 H 1.08004 * 120.00032 * 175.42602 * 16 15 14 18 18 C 1.38811 * 120.00730 * 355.43288 * 16 15 14 19 19 N 1.31613 * 120.00312 * 158.36548 * 18 16 15 20 20 Si 1.86801 * 119.99354 * 338.36737 * 18 16 15 21 21 H 1.48502 * 109.46809 * 185.86585 * 20 18 16 22 22 H 1.48491 * 109.47315 * 305.86270 * 20 18 16 23 23 H 1.48498 * 109.47480 * 65.86931 * 20 18 16 24 24 C 1.47572 * 108.74395 * 1.23553 * 15 14 13 25 25 C 1.52111 * 111.59761 * 300.69644 * 12 11 10 26 26 C 1.46931 * 120.54869 * 5.84252 * 9 7 6 27 27 N 1.34400 * 108.45734 * 359.63351 * 6 5 4 28 28 N 1.28757 * 109.52612 * 0.23070 * 27 6 5 29 29 H 1.07994 * 120.00302 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99473 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99936 * 179.97438 * 2 1 3 32 32 H 1.09009 * 109.46648 * 5.00330 * 3 2 1 33 33 H 1.09000 * 109.47369 * 245.00262 * 3 2 1 34 34 H 1.08006 * 126.57535 * 0.02562 * 5 4 3 35 35 H 1.08997 * 109.60436 * 5.86218 * 10 9 7 36 36 H 1.08998 * 109.60010 * 245.38605 * 10 9 7 37 37 H 1.09004 * 109.47572 * 293.31351 * 11 10 9 38 38 H 1.08997 * 109.47745 * 173.29237 * 11 10 9 39 39 H 1.08999 * 110.73349 * 324.99106 * 13 12 11 40 40 H 1.08993 * 110.73743 * 201.67649 * 13 12 11 41 41 H 1.08997 * 109.87777 * 262.08448 * 14 13 12 42 42 H 1.08995 * 109.88299 * 140.92674 * 14 13 12 43 43 H 0.96999 * 120.00144 * 5.01481 * 19 18 16 44 44 H 1.09001 * 110.37840 * 95.25679 * 24 15 14 45 45 H 1.09003 * 110.37287 * 217.60678 * 24 15 14 46 46 H 1.09007 * 109.46960 * 179.29293 * 25 12 11 47 47 H 1.08991 * 109.47572 * 299.30318 * 25 12 11 48 48 H 1.09001 * 109.60226 * 354.12814 * 26 9 7 49 49 H 1.08997 * 109.60481 * 114.60821 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3222 1.5546 1.0747 6 6 4.7901 1.4859 2.3561 7 6 6.1940 1.6654 2.7724 8 8 7.0256 2.0316 1.9643 9 7 6.5549 1.4234 4.0482 10 6 7.9187 1.7198 4.5077 11 6 7.8354 2.6316 5.7377 12 6 6.9230 1.9980 6.7769 13 6 7.5223 0.6687 7.2844 14 6 8.5137 1.1323 8.3743 15 7 8.0928 2.4738 8.8062 16 6 8.7227 3.2427 9.7481 17 1 8.3780 4.2474 9.9436 18 6 9.8044 2.7310 10.4516 19 7 10.6644 3.5479 11.0219 20 14 10.0394 0.8830 10.5887 21 1 11.1754 0.5948 11.5008 22 1 8.8019 0.2653 11.1291 23 1 10.3280 0.3196 9.2454 24 6 6.8758 2.8516 8.0618 25 6 5.5210 1.7760 6.2301 26 6 5.5909 0.8593 5.0028 27 7 3.7543 1.2330 3.1744 28 7 2.6730 1.1354 2.4822 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4025 -0.9314 34 1 4.9050 1.7480 0.1862 35 1 8.4701 2.2250 3.7147 36 1 8.4246 0.7918 4.7740 37 1 7.4337 3.6016 5.4446 38 1 8.8313 2.7633 6.1606 39 1 8.0463 0.1502 6.4815 40 1 6.7465 0.0344 7.7130 41 1 9.5225 1.1747 7.9638 42 1 8.4838 0.4445 9.2194 43 1 10.5039 4.5045 11.0132 44 1 5.9856 2.6155 8.6449 45 1 6.8973 3.9126 7.8130 46 1 4.9015 1.3105 6.9967 47 1 5.0866 2.7339 5.9440 48 1 4.6077 0.7974 4.5363 49 1 5.9169 -0.1351 5.3073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035235245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:23 Heat of formation + Delta-G solvation = 113.915646 kcal Electronic energy + Delta-G solvation = -30689.792383 eV Core-core repulsion = 26655.489586 eV Total energy + Delta-G solvation = -4034.302797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.31338 -41.47111 -39.91137 -37.39966 -36.91758 -34.94822 -33.83004 -33.04284 -32.52585 -31.50764 -30.62079 -28.72491 -28.06917 -25.72544 -25.04263 -24.20787 -23.57669 -23.27469 -22.23354 -21.43108 -20.83856 -19.90730 -19.15078 -18.36698 -17.56415 -17.13883 -16.97586 -16.85755 -16.74134 -16.26857 -15.99590 -15.57295 -15.50035 -15.18500 -14.99559 -14.95770 -14.66789 -14.53125 -14.18770 -14.09218 -13.56786 -13.50745 -13.29066 -13.04807 -12.89746 -12.86402 -12.59995 -12.46499 -12.32712 -12.08337 -11.87219 -11.63186 -11.57654 -11.45300 -11.37057 -11.31260 -10.89780 -10.69630 -10.56168 -10.54244 -10.31918 -9.59807 -9.10366 -8.62923 -5.40074 0.15664 0.57603 0.79242 1.41767 1.51880 1.59692 1.73107 1.95512 2.19319 2.55468 3.06909 3.12240 3.38200 3.39591 3.57264 3.67463 3.78122 3.82439 3.86499 3.96640 4.09540 4.13678 4.14959 4.31903 4.34533 4.39299 4.47499 4.54103 4.55778 4.64638 4.67691 4.73278 4.76143 4.86144 4.92118 4.95731 5.06976 5.08004 5.10595 5.24357 5.29690 5.39299 5.41032 5.45395 5.55805 5.58995 5.66866 5.71761 6.11500 6.34075 6.84476 6.85927 7.09954 7.49925 8.14953 8.88656 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.002273 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.079659 B =12314.306336 C =12644.541805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.196 4.196 3 C 0.142 3.858 4 N -0.344 5.344 5 C 0.112 3.888 6 C -0.121 4.121 7 C 0.601 3.399 8 O -0.573 6.573 9 N -0.592 5.592 10 C 0.120 3.880 11 C -0.105 4.105 12 C -0.059 4.059 13 C -0.110 4.110 14 C 0.106 3.894 15 N -0.630 5.630 16 C -0.311 4.311 17 H 0.041 0.959 18 C -0.085 4.085 19 N -0.962 5.962 20 Si 1.108 2.892 21 H -0.314 1.314 22 H -0.287 1.287 23 H -0.244 1.244 24 C 0.142 3.858 25 C -0.103 4.103 26 C 0.078 3.922 27 N -0.220 5.220 28 N -0.081 5.081 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.032 0.968 42 H 0.021 0.979 43 H 0.245 0.755 44 H 0.029 0.971 45 H 0.026 0.974 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.144 0.856 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.035 -10.409 -29.775 38.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.215 4.215 3 C 0.024 3.976 4 N -0.129 5.129 5 C -0.045 4.045 6 C -0.261 4.261 7 C 0.388 3.612 8 O -0.452 6.452 9 N -0.322 5.322 10 C -0.002 4.002 11 C -0.143 4.143 12 C -0.060 4.060 13 C -0.148 4.148 14 C -0.018 4.018 15 N -0.358 5.358 16 C -0.440 4.440 17 H 0.059 0.941 18 C -0.278 4.278 19 N -0.607 5.607 20 Si 0.936 3.064 21 H -0.243 1.243 22 H -0.215 1.215 23 H -0.169 1.169 24 C 0.017 3.983 25 C -0.141 4.141 26 C -0.045 4.045 27 N -0.093 5.093 28 N -0.061 5.061 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.254 0.746 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.160 0.840 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.752 -11.592 -28.639 37.785 hybrid contribution 0.034 2.275 -0.249 2.289 sum -21.717 -9.317 -28.888 37.322 Atomic orbital electron populations 1.24202 0.95447 1.03695 0.94847 1.22866 0.96653 0.97324 1.04644 1.21606 0.92201 0.98479 0.85354 1.50812 1.07051 1.46181 1.08842 1.23853 0.84762 0.95413 1.00521 1.21369 0.94368 1.18425 0.91897 1.17085 0.85437 0.76648 0.82015 1.90770 1.52084 1.50005 1.52349 1.47965 1.13079 1.61659 1.09514 1.21650 0.82726 0.99854 0.95959 1.21528 0.99915 0.98309 0.94581 1.21025 0.96230 0.95241 0.93479 1.22672 0.98276 0.96635 0.97200 1.22106 0.97920 0.85935 0.95873 1.44953 1.29322 1.16525 1.44985 1.19989 1.13026 0.95234 1.15732 0.94054 1.27087 0.92821 1.10321 0.97536 1.71044 1.33615 1.03646 1.52401 0.83420 0.74586 0.71099 0.77291 1.24279 1.21491 1.16899 1.21728 0.88372 0.96741 0.91486 1.21594 0.94357 1.00483 0.97674 1.22870 0.96094 0.96133 0.89413 1.74103 0.96871 1.11635 1.26652 1.81975 1.17080 1.22021 0.85012 0.86989 0.86788 0.87149 0.86511 0.83307 0.74621 0.89642 0.89695 0.92703 0.92088 0.88705 0.89255 0.95002 0.96150 0.94612 0.95288 0.95583 0.89202 0.92227 0.83979 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 14.32 67.78 0.97 0.42 16 2 C -0.20 -1.00 9.72 25.64 0.25 -0.75 16 3 C 0.14 0.44 6.98 85.63 0.60 1.04 16 4 N -0.34 -4.06 3.68 -350.82 -1.29 -5.35 16 5 C 0.11 1.47 11.28 83.85 0.95 2.41 16 6 C -0.12 -2.53 6.73 40.81 0.27 -2.26 16 7 C 0.60 15.47 7.68 86.69 0.67 16.13 16 8 O -0.57 -17.23 16.30 -4.04 -0.07 -17.29 16 9 N -0.59 -14.82 2.96 -822.06 -2.43 -17.26 16 10 C 0.12 3.19 6.11 86.41 0.53 3.71 16 11 C -0.10 -3.28 4.87 30.41 0.15 -3.13 16 12 C -0.06 -1.81 0.55 -51.84 -0.03 -1.84 16 13 C -0.11 -3.35 4.92 31.56 0.16 -3.19 16 14 C 0.11 4.47 4.20 86.76 0.36 4.83 16 15 N -0.63 -31.41 3.34 -692.32 -2.31 -33.72 16 16 C -0.31 -18.79 10.51 84.03 0.88 -17.91 16 17 H 0.04 2.71 8.06 -2.91 -0.02 2.69 16 18 C -0.09 -5.27 5.48 84.86 0.47 -4.80 16 19 N -0.96 -64.14 13.70 21.65 0.30 -63.84 16 20 Si 1.11 55.42 24.60 68.60 1.69 57.11 16 21 H -0.31 -16.13 7.11 99.48 0.71 -15.42 16 22 H -0.29 -13.62 6.99 99.48 0.70 -12.93 16 23 H -0.24 -10.66 5.24 99.48 0.52 -10.14 16 24 C 0.14 5.76 6.16 86.63 0.53 6.29 16 25 C -0.10 -2.55 4.84 30.42 0.15 -2.40 16 26 C 0.08 1.72 6.04 86.41 0.52 2.25 16 27 N -0.22 -4.84 8.71 -50.00 -0.44 -5.27 16 28 N -0.08 -1.58 13.63 37.02 0.50 -1.08 16 29 H 0.11 0.33 8.06 -2.91 -0.02 0.31 16 30 H 0.11 0.17 7.84 -2.91 -0.02 0.15 16 31 H 0.11 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.12 0.10 7.79 -2.38 -0.02 0.08 16 33 H 0.15 -0.54 8.08 -2.39 -0.02 -0.56 16 34 H 0.24 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.09 2.39 7.03 -2.39 -0.02 2.37 16 36 H 0.08 2.04 6.55 -2.39 -0.02 2.02 16 37 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.06 2.23 7.82 -2.39 -0.02 2.21 16 39 H 0.09 2.42 6.17 -2.39 -0.01 2.41 16 40 H 0.09 2.36 7.98 -2.39 -0.02 2.34 16 41 H 0.03 1.43 6.64 -2.39 -0.02 1.41 16 42 H 0.02 0.91 4.26 -2.39 -0.01 0.90 16 43 H 0.24 16.43 8.73 -92.71 -0.81 15.62 16 44 H 0.03 1.15 8.00 -2.39 -0.02 1.14 16 45 H 0.03 1.12 8.03 -2.39 -0.02 1.10 16 46 H 0.09 2.02 8.09 -2.38 -0.02 2.00 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.14 3.17 3.67 -90.98 -0.33 2.83 16 49 H 0.08 1.56 7.62 -2.39 -0.02 1.54 16 Total: -1.00 -82.28 379.47 3.77 -78.50 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.40 Total: 7.38 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 7.42 Total: 0.81 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.67 Total: -126.51 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.07 Total: -17.29 kcal Atomic # 14 Polarization: 55.42 SS G_CDS: 1.69 Total: 57.11 kcal Total: -82.28 3.77 -78.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035235245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.418 kcal (2) G-P(sol) polarization free energy of solvation -82.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds