Wall clock time and date at job start Wed Apr 1 2020 04:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47166 * 2 1 4 4 C 1.50697 * 109.47057 * 239.99605 * 2 1 3 5 5 O 1.21279 * 120.00491 * 255.00843 * 4 2 1 6 6 N 1.34777 * 119.99622 * 75.00932 * 4 2 1 7 7 C 1.47087 * 120.88029 * 174.29187 * 6 4 2 8 8 C 1.53232 * 108.52017 * 231.16286 * 7 6 4 9 9 N 1.46896 * 109.33936 * 306.16675 * 8 7 6 10 10 C 1.46903 * 110.99905 * 187.25528 * 9 8 7 11 11 H 1.09000 * 110.88901 * 303.88051 * 10 9 8 12 12 C 1.55157 * 111.00242 * 180.02562 * 10 9 8 13 13 C 1.54330 * 102.94020 * 206.42354 * 12 10 9 14 14 N 1.47015 * 107.27319 * 22.19299 * 13 12 10 15 15 C 1.36939 * 125.64986 * 181.02155 * 14 13 12 16 16 H 1.08000 * 119.99950 * 186.11827 * 15 14 13 17 17 C 1.38806 * 119.99937 * 6.11744 * 15 14 13 18 18 N 1.31618 * 119.99909 * 7.94751 * 17 15 14 19 19 Si 1.86798 * 120.00125 * 187.94487 * 17 15 14 20 20 H 1.48504 * 109.47172 * 84.99086 * 19 17 15 21 21 H 1.48501 * 109.47071 * 324.99149 * 19 17 15 22 22 H 1.48498 * 109.47600 * 204.99306 * 19 17 15 23 23 C 1.47427 * 108.69927 * 1.28669 * 14 13 12 24 24 C 1.46901 * 111.26705 * 63.11088 * 9 8 7 25 25 C 1.47072 * 120.88542 * 354.26706 * 6 4 2 26 26 C 1.53006 * 109.46974 * 119.99799 * 2 1 3 27 27 C 1.52997 * 109.47065 * 294.99986 * 26 2 1 28 28 F 1.39903 * 109.46945 * 55.00329 * 26 2 1 29 29 F 1.39901 * 109.46852 * 174.99848 * 26 2 1 30 30 H 1.09003 * 109.47287 * 304.44749 * 1 2 3 31 31 H 1.08997 * 109.47204 * 64.44734 * 1 2 3 32 32 H 1.08997 * 109.47420 * 184.45015 * 1 2 3 33 33 H 1.09001 * 109.62808 * 111.45343 * 7 6 4 34 34 H 1.09000 * 109.78723 * 350.96926 * 7 6 4 35 35 H 1.09009 * 109.49145 * 186.21467 * 8 7 6 36 36 H 1.08998 * 109.49720 * 66.13107 * 8 7 6 37 37 H 1.09000 * 110.71860 * 88.06339 * 12 10 9 38 38 H 1.09001 * 110.87735 * 324.85782 * 12 10 9 39 39 H 1.09003 * 109.88278 * 262.77300 * 13 12 10 40 40 H 1.08994 * 110.00981 * 141.68684 * 13 12 10 41 41 H 0.97000 * 119.99848 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.36561 * 94.48761 * 23 14 13 43 43 H 1.09004 * 110.36606 * 216.80009 * 23 14 13 44 44 H 1.08993 * 109.49556 * 56.85540 * 24 9 8 45 45 H 1.09001 * 109.48795 * 176.93398 * 24 9 8 46 46 H 1.09004 * 109.62991 * 248.55091 * 25 6 4 47 47 H 1.09005 * 109.62870 * 8.93539 * 25 6 4 48 48 H 1.08997 * 109.47114 * 60.00260 * 27 26 2 49 49 H 1.09003 * 109.46908 * 179.97438 * 27 26 2 50 50 H 1.09004 * 109.47210 * 299.99839 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4906 -1.8297 -1.1398 6 7 1.9722 -0.1021 -2.4315 7 6 2.5687 -0.7240 -3.6235 8 6 3.4772 0.3040 -4.3060 9 7 2.7144 1.5329 -4.5625 10 6 3.4969 2.4797 -5.3682 11 1 4.4494 2.7041 -4.8880 12 6 2.6915 3.7780 -5.6387 13 6 3.3007 4.2937 -6.9596 14 7 3.9252 3.1443 -7.6304 15 6 4.5942 3.1839 -8.8246 16 1 4.9331 2.2673 -9.2844 17 6 4.8369 4.4021 -9.4440 18 7 4.5659 5.5259 -8.8148 19 14 5.5480 4.4467 -11.1708 20 1 4.4492 4.3228 -12.1620 21 1 6.4997 3.3198 -11.3434 22 1 6.2606 5.7326 -11.3798 23 6 3.7064 1.9407 -6.8076 24 6 2.2663 2.1534 -3.3087 25 6 1.3081 1.2011 -2.5853 26 6 2.0400 -0.7212 1.2493 27 6 1.6352 0.0690 2.4953 28 9 1.4821 -2.0029 1.3082 29 9 3.4342 -0.8217 1.1933 30 1 -0.3634 0.5813 0.8475 31 1 -0.3633 0.4433 -0.9271 32 1 -0.3634 -1.0245 0.0797 33 1 1.7797 -1.0290 -4.3110 34 1 3.1559 -1.5945 -3.3308 35 1 3.8409 -0.1020 -5.2500 36 1 4.3230 0.5298 -3.6566 37 1 2.8431 4.5000 -4.8363 38 1 1.6311 3.5585 -5.7629 39 1 4.0531 5.0538 -6.7490 40 1 2.5184 4.7123 -7.5927 41 1 4.7358 6.3772 -9.2475 42 1 2.8200 1.4049 -7.1474 43 1 4.5809 1.2911 -6.8455 44 1 3.1289 2.3535 -2.6732 45 1 1.7519 3.0887 -3.5293 46 1 0.3979 1.0812 -3.1730 47 1 1.0594 1.6036 -1.6033 48 1 0.5489 0.1472 2.5390 49 1 1.9981 -0.4451 3.3854 50 1 2.0699 1.0676 2.4494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046062038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:55 Heat of formation + Delta-G solvation = -93.786631 kcal Electronic energy + Delta-G solvation = -31942.588210 eV Core-core repulsion = 27448.589580 eV Total energy + Delta-G solvation = -4493.998630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.14275 -47.11552 -40.55917 -38.67387 -36.70751 -35.30050 -34.19572 -32.04001 -31.49781 -30.18252 -29.23999 -28.04420 -26.34356 -25.61357 -24.27655 -23.65169 -22.50341 -20.96971 -19.95648 -19.81673 -19.27384 -18.01790 -17.54614 -17.12457 -16.87685 -16.26037 -15.93141 -15.44673 -15.36382 -14.91089 -14.61338 -14.58876 -14.40311 -14.14151 -13.94742 -13.68181 -13.40397 -13.27638 -13.14381 -13.04811 -12.96022 -12.57381 -12.42393 -12.37861 -12.31539 -12.14148 -12.09165 -11.85738 -11.65467 -11.40043 -11.21788 -11.12531 -10.90523 -10.81617 -10.18775 -10.11581 -10.06606 -9.98635 -9.89162 -9.68716 -8.93773 -8.62711 -8.20223 -6.82548 -5.70365 -3.06940 2.30366 2.58639 3.32878 3.40155 3.45048 3.46551 3.63260 3.83538 3.89940 3.99737 4.35656 4.51008 4.55766 4.57131 4.70259 4.78710 4.91316 4.99876 5.06211 5.09322 5.14394 5.21658 5.24254 5.27222 5.37426 5.44284 5.50001 5.52502 5.58434 5.62188 5.68215 5.71433 5.82654 5.87050 5.94663 6.20814 6.25750 6.44922 6.49623 6.62763 6.72056 7.09473 7.13385 7.34358 7.47392 7.64774 7.81289 7.86151 8.26850 9.20511 9.81815 10.47692 11.38730 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.002109 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.763743 B =13273.153640 C =13580.688626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 H 0.122 0.878 4 C 0.520 3.480 5 O -0.525 6.525 6 N -0.608 5.608 7 C 0.119 3.881 8 C 0.041 3.959 9 N -0.526 5.526 10 C 0.067 3.933 11 H 0.048 0.952 12 C -0.133 4.133 13 C 0.172 3.828 14 N -0.604 5.604 15 C -0.227 4.227 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.291 1.291 23 C 0.149 3.851 24 C 0.038 3.962 25 C 0.108 3.892 26 C 0.309 3.691 27 C -0.196 4.196 28 F -0.189 7.189 29 F -0.194 7.194 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.252 0.748 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 -7.780 22.597 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 H 0.139 0.861 4 C 0.307 3.693 5 O -0.401 6.401 6 N -0.342 5.342 7 C -0.003 4.003 8 C -0.088 4.088 9 N -0.251 5.251 10 C -0.041 4.041 11 H 0.066 0.934 12 C -0.172 4.172 13 C 0.047 3.953 14 N -0.331 5.331 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.022 3.978 24 C -0.091 4.091 25 C -0.015 4.015 26 C 0.272 3.728 27 C -0.254 4.254 28 F -0.170 7.170 29 F -0.175 7.175 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.104 0.896 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.399 -8.389 22.216 25.924 hybrid contribution 1.214 0.398 -0.538 1.387 sum -9.185 -7.991 21.678 24.863 Atomic orbital electron populations 1.21906 0.90219 1.04476 1.04148 1.22480 1.00423 1.02260 0.92838 0.86057 1.20105 0.78897 0.86293 0.84053 1.90770 1.45417 1.18333 1.85544 1.48112 1.56711 1.21378 1.08028 1.21757 0.97332 0.95907 0.85327 1.22483 0.94493 0.91147 1.00630 1.61977 1.41032 1.05593 1.16492 1.22947 0.94253 0.92394 0.94514 0.93409 1.22913 0.99455 0.94971 0.99846 1.21212 0.95864 0.90287 0.87967 1.44413 1.63838 1.02867 1.21967 1.19033 1.28908 0.92914 0.94705 0.90495 1.24809 1.01448 0.95276 0.98987 1.69947 1.53904 0.96578 1.36361 0.86138 0.78524 0.76843 0.84267 1.21548 1.20721 1.21743 1.21517 0.97786 0.90626 0.87850 1.22474 0.98086 0.97708 0.90788 1.22042 0.96240 0.82426 1.00805 1.20639 0.75189 0.80830 0.96163 1.22840 1.04657 1.01665 0.96204 1.93033 1.84802 1.41864 1.97310 1.93044 1.30584 1.96473 1.97430 0.90362 0.90276 0.90667 0.90451 0.88846 0.88885 0.94611 0.92635 0.91589 0.91964 0.95312 0.93775 0.95168 0.94819 0.94653 0.88848 0.89982 0.89556 0.88894 0.89626 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.36 37.16 0.31 -0.51 16 2 C -0.16 -1.27 1.55 -91.77 -0.14 -1.41 16 3 H 0.12 0.70 7.11 -51.93 -0.37 0.33 16 4 C 0.52 6.23 6.65 -10.99 -0.07 6.16 16 5 O -0.53 -8.46 14.50 5.56 0.08 -8.38 16 6 N -0.61 -6.61 3.01 -172.46 -0.52 -7.13 16 7 C 0.12 1.40 6.57 -3.60 -0.02 1.37 16 8 C 0.04 0.53 5.52 -3.71 -0.02 0.51 16 9 N -0.53 -7.13 4.52 -223.64 -1.01 -8.14 16 10 C 0.07 1.15 2.73 -65.45 -0.18 0.97 16 11 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 12 C -0.13 -2.36 5.03 -24.89 -0.13 -2.48 16 13 C 0.17 4.09 5.46 -3.06 -0.02 4.07 16 14 N -0.60 -15.35 3.39 -169.94 -0.58 -15.93 16 15 C -0.23 -6.33 10.26 -15.06 -0.15 -6.48 16 16 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 17 C -0.01 -0.25 5.44 -17.43 -0.09 -0.34 16 18 N -0.92 -26.90 10.47 55.49 0.58 -26.32 16 19 Si 0.91 22.08 29.56 -169.99 -5.02 17.05 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.15 3.05 5.96 -2.41 -0.01 3.03 16 24 C 0.04 0.41 5.43 -3.70 -0.02 0.39 16 25 C 0.11 0.91 5.43 -3.61 -0.02 0.89 16 26 C 0.31 2.91 1.51 -26.73 -0.04 2.87 16 27 C -0.20 -0.99 9.14 37.16 0.34 -0.65 16 28 F -0.19 -2.28 15.36 2.25 0.03 -2.24 16 29 F -0.19 -2.45 16.21 2.25 0.04 -2.42 16 30 H 0.08 0.23 6.79 -51.93 -0.35 -0.12 16 31 H 0.08 0.38 6.23 -51.93 -0.32 0.05 16 32 H 0.07 0.52 7.55 -51.93 -0.39 0.13 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.17 7.12 -51.93 -0.37 0.81 16 35 H 0.09 1.21 7.05 -51.92 -0.37 0.84 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.87 7.96 -51.93 -0.41 0.46 16 38 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.06 1.66 6.86 -51.93 -0.36 1.30 16 40 H 0.03 0.75 7.99 -51.93 -0.42 0.33 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.68 7.87 -51.93 -0.41 0.27 16 44 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.95 6.64 -51.93 -0.34 0.61 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.48 4.91 -51.93 -0.26 0.23 16 48 H 0.09 0.29 6.67 -51.93 -0.35 -0.05 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -34.28 383.51 -8.96 -43.24 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -8.06 Total: -3.88 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.27 Total: 8.37 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -1.53 Total: -57.52 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.28 -8.96 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046062038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.549 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds