Wall clock time and date at job start Wed Apr 1 2020 04:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47166 * 2 1 4 4 C 1.50697 * 109.47057 * 239.99605 * 2 1 3 5 5 O 1.21279 * 120.00491 * 255.00843 * 4 2 1 6 6 N 1.34777 * 119.99622 * 75.00932 * 4 2 1 7 7 C 1.47087 * 120.88029 * 174.29187 * 6 4 2 8 8 C 1.53232 * 108.52017 * 231.16286 * 7 6 4 9 9 N 1.46896 * 109.33936 * 306.16675 * 8 7 6 10 10 C 1.46903 * 110.99905 * 187.25528 * 9 8 7 11 11 H 1.09000 * 110.88901 * 303.88051 * 10 9 8 12 12 C 1.55157 * 111.00242 * 180.02562 * 10 9 8 13 13 C 1.54330 * 102.94020 * 206.42354 * 12 10 9 14 14 N 1.47015 * 107.27319 * 22.19299 * 13 12 10 15 15 C 1.36939 * 125.64986 * 181.02155 * 14 13 12 16 16 H 1.08000 * 119.99950 * 186.11827 * 15 14 13 17 17 C 1.38806 * 119.99937 * 6.11744 * 15 14 13 18 18 N 1.31618 * 119.99909 * 7.94751 * 17 15 14 19 19 Si 1.86798 * 120.00125 * 187.94487 * 17 15 14 20 20 H 1.48504 * 109.47172 * 84.99086 * 19 17 15 21 21 H 1.48501 * 109.47071 * 324.99149 * 19 17 15 22 22 H 1.48498 * 109.47600 * 204.99306 * 19 17 15 23 23 C 1.47427 * 108.69927 * 1.28669 * 14 13 12 24 24 C 1.46901 * 111.26705 * 63.11088 * 9 8 7 25 25 C 1.47072 * 120.88542 * 354.26706 * 6 4 2 26 26 C 1.53006 * 109.46974 * 119.99799 * 2 1 3 27 27 C 1.52997 * 109.47065 * 294.99986 * 26 2 1 28 28 F 1.39903 * 109.46945 * 55.00329 * 26 2 1 29 29 F 1.39901 * 109.46852 * 174.99848 * 26 2 1 30 30 H 1.09003 * 109.47287 * 304.44749 * 1 2 3 31 31 H 1.08997 * 109.47204 * 64.44734 * 1 2 3 32 32 H 1.08997 * 109.47420 * 184.45015 * 1 2 3 33 33 H 1.09001 * 109.62808 * 111.45343 * 7 6 4 34 34 H 1.09000 * 109.78723 * 350.96926 * 7 6 4 35 35 H 1.09009 * 109.49145 * 186.21467 * 8 7 6 36 36 H 1.08998 * 109.49720 * 66.13107 * 8 7 6 37 37 H 1.09000 * 110.71860 * 88.06339 * 12 10 9 38 38 H 1.09001 * 110.87735 * 324.85782 * 12 10 9 39 39 H 1.09003 * 109.88278 * 262.77300 * 13 12 10 40 40 H 1.08994 * 110.00981 * 141.68684 * 13 12 10 41 41 H 0.97000 * 119.99848 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.36561 * 94.48761 * 23 14 13 43 43 H 1.09004 * 110.36606 * 216.80009 * 23 14 13 44 44 H 1.08993 * 109.49556 * 56.85540 * 24 9 8 45 45 H 1.09001 * 109.48795 * 176.93398 * 24 9 8 46 46 H 1.09004 * 109.62991 * 248.55091 * 25 6 4 47 47 H 1.09005 * 109.62870 * 8.93539 * 25 6 4 48 48 H 1.08997 * 109.47114 * 60.00260 * 27 26 2 49 49 H 1.09003 * 109.46908 * 179.97438 * 27 26 2 50 50 H 1.09004 * 109.47210 * 299.99839 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4906 -1.8297 -1.1398 6 7 1.9722 -0.1021 -2.4315 7 6 2.5687 -0.7240 -3.6235 8 6 3.4772 0.3040 -4.3060 9 7 2.7144 1.5329 -4.5625 10 6 3.4969 2.4797 -5.3682 11 1 4.4494 2.7041 -4.8880 12 6 2.6915 3.7780 -5.6387 13 6 3.3007 4.2937 -6.9596 14 7 3.9252 3.1443 -7.6304 15 6 4.5942 3.1839 -8.8246 16 1 4.9331 2.2673 -9.2844 17 6 4.8369 4.4021 -9.4440 18 7 4.5659 5.5259 -8.8148 19 14 5.5480 4.4467 -11.1708 20 1 4.4492 4.3228 -12.1620 21 1 6.4997 3.3198 -11.3434 22 1 6.2606 5.7326 -11.3798 23 6 3.7064 1.9407 -6.8076 24 6 2.2663 2.1534 -3.3087 25 6 1.3081 1.2011 -2.5853 26 6 2.0400 -0.7212 1.2493 27 6 1.6352 0.0690 2.4953 28 9 1.4821 -2.0029 1.3082 29 9 3.4342 -0.8217 1.1933 30 1 -0.3634 0.5813 0.8475 31 1 -0.3633 0.4433 -0.9271 32 1 -0.3634 -1.0245 0.0797 33 1 1.7797 -1.0290 -4.3110 34 1 3.1559 -1.5945 -3.3308 35 1 3.8409 -0.1020 -5.2500 36 1 4.3230 0.5298 -3.6566 37 1 2.8431 4.5000 -4.8363 38 1 1.6311 3.5585 -5.7629 39 1 4.0531 5.0538 -6.7490 40 1 2.5184 4.7123 -7.5927 41 1 4.7358 6.3772 -9.2475 42 1 2.8200 1.4049 -7.1474 43 1 4.5809 1.2911 -6.8455 44 1 3.1289 2.3535 -2.6732 45 1 1.7519 3.0887 -3.5293 46 1 0.3979 1.0812 -3.1730 47 1 1.0594 1.6036 -1.6033 48 1 0.5489 0.1472 2.5390 49 1 1.9981 -0.4451 3.3854 50 1 2.0699 1.0676 2.4494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046062038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:54 Heat of formation + Delta-G solvation = -116.949333 kcal Electronic energy + Delta-G solvation = -31943.592620 eV Core-core repulsion = 27448.589580 eV Total energy + Delta-G solvation = -4495.003040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.91466 -47.92605 -41.46955 -39.93426 -38.09691 -36.05027 -35.41581 -33.81044 -32.42727 -30.96940 -30.72430 -29.38543 -27.58866 -26.49287 -25.76055 -24.76404 -23.33226 -21.89455 -21.71733 -21.13840 -20.16280 -18.94707 -18.73071 -18.30003 -17.89753 -17.24046 -16.83779 -16.65423 -16.53606 -16.21164 -15.95571 -15.89743 -15.40511 -15.10376 -14.88548 -14.66239 -14.37812 -14.34849 -14.12846 -13.91321 -13.84917 -13.72401 -13.58552 -13.56204 -13.21602 -12.97622 -12.90119 -12.87092 -12.73799 -12.69455 -12.55845 -12.41048 -12.22757 -11.98793 -11.83128 -11.77431 -11.67442 -11.58902 -11.49070 -10.81931 -10.72450 -9.88438 -9.30416 -8.88605 -7.83323 -5.22294 1.44623 1.45718 1.48036 1.55777 1.78264 2.47555 2.71024 2.77849 3.08076 3.23456 3.32171 3.42096 3.63770 3.72805 3.82422 3.93868 3.97939 4.06570 4.11316 4.13934 4.21009 4.27176 4.30654 4.41407 4.48640 4.61569 4.63230 4.70796 4.72017 4.74718 4.77617 4.80496 4.85484 4.90640 4.98371 5.03763 5.05321 5.10026 5.20560 5.25627 5.35837 5.44251 5.61321 5.80234 6.00071 6.09144 6.23088 6.30968 6.99476 7.10014 7.77534 8.41744 9.23946 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.002109 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.763743 B =13273.153640 C =13580.688626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.152 4.152 3 H 0.153 0.847 4 C 0.511 3.489 5 O -0.577 6.577 6 N -0.608 5.608 7 C 0.124 3.876 8 C 0.047 3.953 9 N -0.525 5.525 10 C 0.087 3.913 11 H 0.037 0.963 12 C -0.112 4.112 13 C 0.176 3.824 14 N -0.627 5.627 15 C -0.244 4.244 16 H 0.079 0.921 17 C -0.065 4.065 18 N -0.948 5.948 19 Si 0.977 3.023 20 H -0.285 1.285 21 H -0.270 1.270 22 H -0.293 1.293 23 C 0.146 3.854 24 C 0.034 3.966 25 C 0.110 3.890 26 C 0.288 3.712 27 C -0.188 4.188 28 F -0.211 7.211 29 F -0.220 7.220 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.027 0.973 40 H -0.004 1.004 41 H 0.247 0.753 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.035 0.965 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.125 0.875 48 H 0.117 0.883 49 H 0.082 0.918 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 -7.028 24.328 28.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 H 0.171 0.829 4 C 0.300 3.700 5 O -0.457 6.457 6 N -0.341 5.341 7 C 0.001 3.999 8 C -0.082 4.082 9 N -0.250 5.250 10 C -0.022 4.022 11 H 0.055 0.945 12 C -0.151 4.151 13 C 0.051 3.949 14 N -0.354 5.354 15 C -0.373 4.373 16 H 0.097 0.903 17 C -0.258 4.258 18 N -0.596 5.596 19 Si 0.805 3.195 20 H -0.212 1.212 21 H -0.195 1.195 22 H -0.220 1.220 23 C 0.021 3.979 24 C -0.094 4.094 25 C -0.012 4.012 26 C 0.251 3.749 27 C -0.245 4.245 28 F -0.192 7.192 29 F -0.201 7.201 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.143 0.857 48 H 0.136 0.864 49 H 0.101 0.899 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.201 -7.645 23.967 27.960 hybrid contribution 1.771 0.101 -1.081 2.078 sum -10.430 -7.544 22.887 26.258 Atomic orbital electron populations 1.21982 0.87903 1.04151 1.06397 1.22610 1.02126 1.02790 0.89817 0.82940 1.20909 0.77958 0.85910 0.85263 1.90745 1.47767 1.20812 1.86352 1.48231 1.56287 1.22110 1.07434 1.21585 0.97199 0.95173 0.85928 1.22411 0.94451 0.91093 1.00207 1.61936 1.39873 1.05020 1.18143 1.22565 0.94248 0.92429 0.92932 0.94464 1.22721 0.99786 0.95522 0.97034 1.21022 0.94026 0.89594 0.90258 1.44733 1.63639 1.04892 1.22128 1.19404 1.28756 0.93104 0.96003 0.90337 1.25642 1.02449 0.95036 1.02711 1.70162 1.55086 0.96775 1.37613 0.85115 0.77861 0.76809 0.79672 1.21217 1.19535 1.21984 1.21623 0.97583 0.89158 0.89555 1.22652 0.98664 0.98741 0.89349 1.22268 0.95491 0.80570 1.02848 1.21438 0.73891 0.80499 0.99023 1.22881 1.06343 1.01739 0.93558 1.92984 1.84976 1.43741 1.97543 1.92989 1.32860 1.96583 1.97696 0.86840 0.89016 0.92597 0.89902 0.90266 0.89642 0.95425 0.89915 0.89949 0.95467 0.98627 0.94343 0.94954 0.95078 0.94643 0.87435 0.88846 0.85735 0.86435 0.89906 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.36 71.98 0.60 -0.42 16 2 C -0.15 -1.98 1.55 -11.54 -0.02 -2.00 16 3 H 0.15 1.00 7.11 -2.39 -0.02 0.98 16 4 C 0.51 11.55 6.65 87.66 0.58 12.13 16 5 O -0.58 -18.93 14.50 -3.03 -0.04 -18.98 16 6 N -0.61 -11.91 3.01 -817.94 -2.46 -14.37 16 7 C 0.12 2.82 6.57 86.35 0.57 3.39 16 8 C 0.05 1.16 5.52 86.38 0.48 1.64 16 9 N -0.52 -13.07 4.52 -861.48 -3.90 -16.97 16 10 C 0.09 2.85 2.73 46.38 0.13 2.98 16 11 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 12 C -0.11 -3.77 5.03 31.79 0.16 -3.61 16 13 C 0.18 8.54 5.46 86.73 0.47 9.01 16 14 N -0.63 -32.41 3.39 -691.56 -2.35 -34.76 16 15 C -0.24 -13.81 10.26 84.03 0.86 -12.95 16 16 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 17 C -0.07 -3.73 5.44 84.86 0.46 -3.27 16 18 N -0.95 -56.92 10.47 21.65 0.23 -56.69 16 19 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 C 0.15 5.97 5.96 86.93 0.52 6.49 16 24 C 0.03 0.60 5.43 86.38 0.47 1.07 16 25 C 0.11 1.39 5.43 86.35 0.47 1.86 16 26 C 0.29 4.97 1.51 30.60 0.05 5.01 16 27 C -0.19 -1.29 9.14 71.98 0.66 -0.64 16 28 F -0.21 -5.05 15.36 44.97 0.69 -4.36 16 29 F -0.22 -5.50 16.21 44.97 0.73 -4.77 16 30 H 0.11 0.02 6.79 -2.39 -0.02 0.00 16 31 H 0.09 0.43 6.23 -2.39 -0.01 0.41 16 32 H 0.05 0.65 7.55 -2.39 -0.02 0.63 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.05 7.12 -2.39 -0.02 2.03 16 35 H 0.09 2.21 7.05 -2.38 -0.02 2.20 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 2.36 7.96 -2.39 -0.02 2.34 16 38 H 0.08 2.53 8.10 -2.39 -0.02 2.52 16 39 H 0.03 1.49 6.86 -2.39 -0.02 1.48 16 40 H 0.00 -0.24 7.99 -2.39 -0.02 -0.26 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.03 1.27 7.87 -2.38 -0.02 1.25 16 44 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.11 1.67 6.64 -2.39 -0.02 1.65 16 46 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.12 0.66 4.91 -2.38 -0.01 0.65 16 48 H 0.12 0.21 6.67 -2.39 -0.02 0.20 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -79.83 383.51 2.31 -77.52 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.94 Total: 4.67 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.45 Total: 20.69 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -8.48 Total: -122.79 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.04 Total: -18.98 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 1.42 Total: -9.13 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -79.83 2.31 -77.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046062038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.429 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds