Wall clock time and date at job start Wed Apr 1 2020 04:22:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08995 * 109.47498 * 2 1
4 4 C 1.50704 * 109.47114 * 119.99950 * 2 1 3
5 5 O 1.21282 * 119.99803 * 113.26530 * 4 2 1
6 6 N 1.34769 * 120.00116 * 293.26348 * 4 2 1
7 7 C 1.47085 * 120.88022 * 5.52499 * 6 4 2
8 8 C 1.53238 * 108.52091 * 231.20501 * 7 6 4
9 9 N 1.46894 * 109.34096 * 306.16890 * 8 7 6
10 10 C 1.46904 * 111.00075 * 187.25266 * 9 8 7
11 11 H 1.09002 * 110.88350 * 303.87723 * 10 9 8
12 12 C 1.55155 * 111.00148 * 179.97438 * 10 9 8
13 13 C 1.54324 * 102.94219 * 206.42289 * 12 10 9
14 14 N 1.47030 * 107.27079 * 22.19195 * 13 12 10
15 15 C 1.36933 * 125.64822 * 181.01959 * 14 13 12
16 16 H 1.08001 * 119.99494 * 171.60929 * 15 14 13
17 17 C 1.38810 * 120.00425 * 351.60407 * 15 14 13
18 18 N 1.31615 * 119.99845 * 151.58002 * 17 15 14
19 19 Si 1.86797 * 120.00001 * 331.58525 * 17 15 14
20 20 H 1.48503 * 109.47173 * 84.60762 * 19 17 15
21 21 H 1.48510 * 109.47247 * 324.61105 * 19 17 15
22 22 H 1.48492 * 109.47131 * 204.61041 * 19 17 15
23 23 C 1.47423 * 108.69872 * 1.29274 * 14 13 12
24 24 C 1.46898 * 111.26896 * 63.10529 * 9 8 7
25 25 C 1.47077 * 120.88734 * 185.54570 * 6 4 2
26 26 C 1.53002 * 109.47094 * 239.99545 * 2 1 3
27 27 C 1.53005 * 109.47011 * 64.99957 * 26 2 1
28 28 F 1.39897 * 109.47337 * 185.00123 * 26 2 1
29 29 F 1.39899 * 109.47580 * 305.00387 * 26 2 1
30 30 H 1.08999 * 109.47233 * 304.44781 * 1 2 3
31 31 H 1.09000 * 109.47251 * 64.44830 * 1 2 3
32 32 H 1.09000 * 109.47214 * 184.44402 * 1 2 3
33 33 H 1.08996 * 109.63088 * 111.49395 * 7 6 4
34 34 H 1.08999 * 109.62564 * 350.91599 * 7 6 4
35 35 H 1.09004 * 109.49389 * 186.20664 * 8 7 6
36 36 H 1.09003 * 109.49208 * 66.12864 * 8 7 6
37 37 H 1.09000 * 110.72058 * 88.06782 * 12 10 9
38 38 H 1.08998 * 110.87892 * 324.86013 * 12 10 9
39 39 H 1.08997 * 109.88399 * 262.77856 * 13 12 10
40 40 H 1.08996 * 110.01417 * 141.68297 * 13 12 10
41 41 H 0.97003 * 120.00315 * 5.01980 * 18 17 15
42 42 H 1.08995 * 110.37171 * 94.48046 * 23 14 13
43 43 H 1.09002 * 110.36246 * 216.80520 * 23 14 13
44 44 H 1.09001 * 109.49341 * 56.85466 * 24 9 8
45 45 H 1.09004 * 109.49467 * 176.93662 * 24 9 8
46 46 H 1.08996 * 109.62913 * 248.50958 * 25 6 4
47 47 H 1.09005 * 109.62444 * 8.88971 * 25 6 4
48 48 H 1.09006 * 109.46457 * 60.00261 * 27 26 2
49 49 H 1.08993 * 109.47339 * 179.97438 * 27 26 2
50 50 H 1.08995 * 109.47157 * 300.00299 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 2.6256 -1.7628 1.1234
6 7 1.8223 -0.1763 2.4499
7 6 1.0028 1.0341 2.6129
8 6 1.7942 2.0495 3.4441
9 7 2.2276 1.4193 4.6982
10 6 2.8402 2.4052 5.5986
11 1 3.6708 2.9145 5.1098
12 6 3.2974 1.7398 6.9235
13 6 3.2491 2.9074 7.9314
14 7 2.3291 3.9166 7.3866
15 6 2.0249 5.1172 7.9706
16 1 1.4436 5.8490 7.4293
17 6 2.4635 5.3937 9.2582
18 7 2.6876 6.6380 9.6241
19 14 2.7358 3.9999 10.4716
20 1 4.0934 3.4308 10.2754
21 1 1.7183 2.9417 10.2466
22 1 2.6121 4.5188 11.8574
23 6 1.7834 3.4189 6.1107
24 6 3.1430 0.2991 4.4431
25 6 2.4069 -0.7880 3.6529
26 6 2.0399 -0.7214 -1.2492
27 6 1.6351 0.0688 -2.4954
28 9 3.4342 -0.8218 -1.1932
29 9 1.4821 -2.0030 -1.3082
30 1 -0.3634 0.5813 0.8474
31 1 -0.3634 0.4433 -0.9271
32 1 -0.3633 -1.0246 0.0796
33 1 0.0759 0.7822 3.1282
34 1 0.7773 1.4582 1.6344
35 1 1.1613 2.9082 3.6682
36 1 2.6679 2.3781 2.8813
37 1 4.3120 1.3524 6.8305
38 1 2.6091 0.9475 7.2180
39 1 4.2438 3.3374 8.0485
40 1 2.8827 2.5535 8.8950
41 1 2.4774 7.3667 9.0194
42 1 0.8269 2.9229 6.2749
43 1 1.6698 4.2387 5.4013
44 1 3.9979 0.6522 3.8664
45 1 3.4884 -0.1117 5.3919
46 1 1.6150 -1.2152 4.2681
47 1 3.1072 -1.5710 3.3621
48 1 2.0699 1.0673 -2.4494
49 1 1.9988 -0.4448 -3.3853
50 1 0.5489 0.1470 -2.5390
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046062043.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:02
Heat of formation + Delta-G solvation = -110.551799 kcal
Electronic energy + Delta-G solvation = -32047.295188 eV
Core-core repulsion = 27552.569566 eV
Total energy + Delta-G solvation = -4494.725623 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 345.197 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-49.92205 -47.93161 -41.51927 -40.08004 -38.26169 -36.16612 -35.46157 -34.15914
-32.44777 -31.39994 -30.50537 -29.84888 -27.77831 -26.36462 -25.45258 -24.73904
-23.33179 -22.31086 -21.78507 -21.23256 -20.22772 -19.52102 -18.78399 -18.33950
-17.91579 -17.40206 -17.02369 -16.78715 -16.74582 -16.17022 -15.96888 -15.76037
-15.57572 -15.16268 -15.13870 -14.88576 -14.51154 -14.47643 -14.36883 -14.18662
-13.91417 -13.79458 -13.61019 -13.56396 -13.29038 -13.02858 -12.99451 -12.93147
-12.77895 -12.69747 -12.56196 -12.34395 -12.27290 -12.19772 -11.83360 -11.75318
-11.61027 -11.57894 -11.09318 -10.83401 -10.56395 -9.90530 -9.33979 -9.16609
-8.64935 -5.40141 1.40354 1.43652 1.51900 1.71157 1.76462 2.51883
2.65020 2.69339 3.05154 3.08334 3.21420 3.39662 3.43154 3.58890
3.71771 3.84616 3.93611 3.98518 4.04245 4.09827 4.14114 4.20492
4.24018 4.33976 4.37527 4.46886 4.56074 4.58923 4.66909 4.71847
4.73082 4.74958 4.78772 4.82198 4.85053 4.91176 4.95176 5.02804
5.02955 5.13866 5.22039 5.24786 5.35597 5.57512 5.95553 6.03613
6.11823 6.27450 6.83137 6.97551 7.49813 8.14062 8.85029
Molecular weight = 345.20amu
Principal moments of inertia in cm(-1)
A = 0.028543 B = 0.002246 C = 0.002169
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 980.740166 B =12464.671662 C =12904.340363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.153 4.153
3 H 0.152 0.848
4 C 0.512 3.488
5 O -0.575 6.575
6 N -0.607 5.607
7 C 0.108 3.892
8 C 0.035 3.965
9 N -0.526 5.526
10 C 0.087 3.913
11 H 0.047 0.953
12 C -0.109 4.109
13 C 0.108 3.892
14 N -0.632 5.632
15 C -0.320 4.320
16 H 0.048 0.952
17 C -0.077 4.077
18 N -0.952 5.952
19 Si 1.109 2.891
20 H -0.271 1.271
21 H -0.277 1.277
22 H -0.306 1.306
23 C 0.148 3.852
24 C 0.047 3.953
25 C 0.121 3.879
26 C 0.290 3.710
27 C -0.189 4.189
28 F -0.218 7.218
29 F -0.212 7.212
30 H 0.099 0.901
31 H 0.108 0.892
32 H 0.055 0.945
33 H 0.092 0.908
34 H 0.125 0.875
35 H 0.095 0.905
36 H 0.038 0.962
37 H 0.092 0.908
38 H 0.091 0.909
39 H 0.025 0.975
40 H 0.024 0.976
41 H 0.249 0.751
42 H 0.036 0.964
43 H 0.036 0.964
44 H 0.031 0.969
45 H 0.100 0.900
46 H 0.083 0.917
47 H 0.082 0.918
48 H 0.110 0.890
49 H 0.083 0.917
50 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.130 -15.182 -24.894 29.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.174 4.174
3 H 0.169 0.831
4 C 0.301 3.699
5 O -0.455 6.455
6 N -0.340 5.340
7 C -0.014 4.014
8 C -0.094 4.094
9 N -0.251 5.251
10 C -0.023 4.023
11 H 0.065 0.935
12 C -0.147 4.147
13 C -0.017 4.017
14 N -0.360 5.360
15 C -0.449 4.449
16 H 0.066 0.934
17 C -0.271 4.271
18 N -0.596 5.596
19 Si 0.937 3.063
20 H -0.197 1.197
21 H -0.204 1.204
22 H -0.235 1.235
23 C 0.022 3.978
24 C -0.082 4.082
25 C -0.002 4.002
26 C 0.253 3.747
27 C -0.247 4.247
28 F -0.199 7.199
29 F -0.193 7.193
30 H 0.117 0.883
31 H 0.127 0.873
32 H 0.074 0.926
33 H 0.110 0.890
34 H 0.143 0.857
35 H 0.113 0.887
36 H 0.056 0.944
37 H 0.111 0.889
38 H 0.109 0.891
39 H 0.043 0.957
40 H 0.041 0.959
41 H 0.058 0.942
42 H 0.054 0.946
43 H 0.054 0.946
44 H 0.049 0.951
45 H 0.119 0.881
46 H 0.101 0.899
47 H 0.100 0.900
48 H 0.129 0.871
49 H 0.102 0.898
50 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -4.716 -16.225 -23.194 28.696
hybrid contribution 0.439 1.069 -1.435 1.842
sum -4.278 -15.156 -24.629 29.234
Atomic orbital electron populations
1.22130 0.88125 1.04081 1.06697 1.22588 1.01996 1.02824 0.90042
0.83067 1.20845 0.78806 0.84969 0.85328 1.90749 1.43721 1.24271
1.86732 1.48200 1.51068 1.28890 1.05850 1.22345 0.93789 0.83195
1.02032 1.22615 0.99579 0.97625 0.89550 1.61909 1.40092 1.09305
1.13806 1.22580 0.94951 0.92070 0.92666 0.93543 1.22595 1.02735
0.96427 0.92905 1.21793 0.93069 0.90112 0.96749 1.44882 1.50172
1.17745 1.23153 1.19908 1.34979 0.91276 0.98713 0.93393 1.26952
0.99123 1.02663 0.98410 1.71040 1.46605 0.99567 1.42372 0.83203
0.77551 0.72326 0.73230 1.19736 1.20397 1.23510 1.21618 0.95273
0.94255 0.86612 1.22471 0.93296 0.91746 1.00672 1.21660 0.98403
0.95129 0.84990 1.21383 0.74008 0.80409 0.98859 1.22892 1.06288
1.01753 0.93719 1.92991 1.32667 1.96556 1.97676 1.92980 1.85023
1.43763 1.97556 0.88264 0.87318 0.92590 0.88964 0.85703 0.88660
0.94418 0.88905 0.89094 0.95740 0.95868 0.94150 0.94577 0.94593
0.95108 0.88146 0.89903 0.90008 0.87093 0.89829 0.86498
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.03 8.37 71.98 0.60 -0.43 16
2 C -0.15 -1.93 1.58 -11.54 -0.02 -1.95 16
3 H 0.15 1.01 7.57 -2.39 -0.02 0.99 16
4 C 0.51 10.94 6.79 87.66 0.60 11.54 16
5 O -0.58 -17.96 14.35 -3.04 -0.04 -18.01 16
6 N -0.61 -10.91 3.01 -817.95 -2.46 -13.37 16
7 C 0.11 1.33 5.32 86.35 0.46 1.79 16
8 C 0.03 0.60 5.52 86.38 0.48 1.08 16
9 N -0.53 -11.55 4.52 -861.46 -3.90 -15.45 16
10 C 0.09 2.48 2.73 46.38 0.13 2.61 16
11 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
12 C -0.11 -3.19 5.03 31.78 0.16 -3.03 16
13 C 0.11 4.46 4.92 86.73 0.43 4.89 16
14 N -0.63 -30.26 3.30 -691.55 -2.28 -32.54 16
15 C -0.32 -18.49 10.42 84.03 0.88 -17.61 16
16 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16
17 C -0.08 -4.59 5.42 84.86 0.46 -4.13 16
18 N -0.95 -61.02 13.70 21.65 0.30 -60.72 16
19 Si 1.11 54.20 24.66 68.60 1.69 55.89 16
20 H -0.27 -12.14 6.67 99.48 0.66 -11.48 16
21 H -0.28 -12.66 6.75 99.48 0.67 -11.99 16
22 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16
23 C 0.15 5.48 5.95 86.93 0.52 5.99 16
24 C 0.05 0.92 5.43 86.38 0.47 1.39 16
25 C 0.12 2.36 6.58 86.35 0.57 2.93 16
26 C 0.29 4.85 1.50 30.60 0.05 4.89 16
27 C -0.19 -1.28 9.14 71.98 0.66 -0.63 16
28 F -0.22 -5.30 15.99 44.97 0.72 -4.58 16
29 F -0.21 -4.88 15.69 44.97 0.71 -4.18 16
30 H 0.10 0.37 5.29 -2.39 -0.01 0.35 16
31 H 0.11 0.10 6.37 -2.39 -0.02 0.09 16
32 H 0.05 0.62 7.83 -2.39 -0.02 0.60 16
33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
34 H 0.13 0.71 4.50 -2.39 -0.01 0.70 16
35 H 0.10 1.66 7.05 -2.38 -0.02 1.64 16
36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16
37 H 0.09 2.25 7.96 -2.39 -0.02 2.23 16
38 H 0.09 2.46 8.11 -2.39 -0.02 2.44 16
39 H 0.02 1.08 7.73 -2.39 -0.02 1.07 16
40 H 0.02 1.02 3.88 -2.39 -0.01 1.01 16
41 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16
42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16
43 H 0.04 1.34 7.87 -2.39 -0.02 1.32 16
44 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16
45 H 0.10 1.84 6.64 -2.39 -0.02 1.82 16
46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
47 H 0.08 1.83 7.10 -2.38 -0.02 1.82 16
48 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16
49 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16
50 H 0.12 0.22 6.47 -2.39 -0.02 0.20 16
Total: -1.00 -81.74 376.74 1.98 -79.76
By element:
Atomic # 1 Polarization: 3.05 SS G_CDS: 0.83 Total: 3.88 kcal
Atomic # 6 Polarization: 2.90 SS G_CDS: 6.42 Total: 9.32 kcal
Atomic # 7 Polarization: -113.74 SS G_CDS: -8.34 Total: -122.09 kcal
Atomic # 8 Polarization: -17.96 SS G_CDS: -0.04 Total: -18.01 kcal
Atomic # 9 Polarization: -10.19 SS G_CDS: 1.42 Total: -8.76 kcal
Atomic # 14 Polarization: 54.20 SS G_CDS: 1.69 Total: 55.89 kcal
Total: -81.74 1.98 -79.76 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046062043.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.787 kcal
(2) G-P(sol) polarization free energy of solvation -81.744 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds