Wall clock time and date at job start Wed Apr 1 2020 03:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99679 * 2 1 4 4 N 1.46497 * 109.47340 * 124.99990 * 3 2 1 5 5 C 1.34809 * 126.60036 * 125.29375 * 4 3 2 6 6 C 1.36594 * 106.84289 * 180.13016 * 5 4 3 7 7 C 1.47523 * 125.77249 * 179.89703 * 6 5 4 8 8 O 1.21597 * 120.00139 * 359.71064 * 7 6 5 9 9 N 1.34777 * 120.00248 * 179.71741 * 7 6 5 10 10 C 1.46500 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46900 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.43554 * 59.82854 * 11 10 9 13 13 C 1.53153 * 109.43487 * 179.69415 * 11 10 9 14 14 C 1.54245 * 108.84149 * 66.08408 * 13 11 10 15 15 H 1.09003 * 112.33394 * 187.68952 * 14 13 11 16 16 C 1.54612 * 107.85985 * 312.47604 * 14 13 11 17 17 C 1.53793 * 104.84767 * 88.46883 * 16 14 13 18 18 C 1.54605 * 104.85403 * 0.02562 * 17 16 14 19 19 H 1.09000 * 112.69780 * 146.96041 * 18 17 16 20 20 C 1.53140 * 109.43617 * 299.91976 * 11 10 9 21 21 N 1.48290 * 106.99158 * 64.13340 * 14 13 11 22 22 C 1.36935 * 128.21074 * 107.52883 * 21 14 13 23 23 H 1.07998 * 120.00212 * 154.74284 * 22 21 14 24 24 C 1.38809 * 120.00049 * 334.73788 * 22 21 14 25 25 N 1.31625 * 120.00079 * 354.98212 * 24 22 21 26 26 Si 1.86799 * 120.00272 * 174.97930 * 24 22 21 27 27 H 1.48498 * 109.47293 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.47079 * 300.00517 * 26 24 22 29 29 H 1.48496 * 109.47059 * 60.00221 * 26 24 22 30 30 N 1.34399 * 108.46071 * 359.63518 * 6 5 4 31 31 N 1.28760 * 109.51988 * 0.22348 * 30 6 5 32 32 H 1.08001 * 119.99923 * 0.02562 * 1 2 3 33 33 H 1.08001 * 119.99600 * 180.02562 * 1 2 3 34 34 H 1.07995 * 120.00210 * 179.97438 * 2 1 3 35 35 H 1.08998 * 109.47360 * 4.99224 * 3 2 1 36 36 H 1.09010 * 109.46882 * 244.99742 * 3 2 1 37 37 H 1.08006 * 126.57858 * 359.97438 * 5 4 3 38 38 H 0.96996 * 119.99758 * 359.97438 * 9 7 6 39 39 H 1.08991 * 109.47386 * 59.99751 * 10 9 7 40 40 H 1.09004 * 109.47065 * 299.99629 * 10 9 7 41 41 H 1.09004 * 109.57097 * 185.99514 * 13 11 10 42 42 H 1.09007 * 109.56777 * 306.23684 * 13 11 10 43 43 H 1.08997 * 110.38536 * 207.17397 * 16 14 13 44 44 H 1.09000 * 110.38032 * 329.54206 * 16 14 13 45 45 H 1.09001 * 110.43537 * 241.09801 * 17 16 14 46 46 H 1.09003 * 110.24096 * 118.80256 * 17 16 14 47 47 H 1.09005 * 109.57260 * 174.00759 * 20 11 10 48 48 H 1.09000 * 109.67132 * 53.70424 * 20 11 10 49 49 H 0.96998 * 120.00242 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3219 1.5554 1.0747 6 6 4.7898 1.4871 2.3562 7 6 6.1936 1.6671 2.7725 8 8 7.0504 1.8936 1.9400 9 7 6.5265 1.5805 4.0756 10 6 7.9204 1.7599 4.4891 11 6 8.0245 1.6138 6.0085 12 1 7.6802 0.6222 6.3020 13 6 9.4832 1.7939 6.4391 14 6 9.9106 3.2484 6.1545 15 1 10.9774 3.4055 6.3144 16 6 9.4648 3.6010 4.7166 17 6 8.0324 4.1398 4.8691 18 6 7.7404 4.0656 6.3855 19 1 7.0885 4.8692 6.7282 20 6 7.1523 2.6764 6.6835 21 7 9.0799 4.1212 7.0189 22 6 9.4609 4.8186 8.1340 23 1 8.9155 5.7022 8.4310 24 6 10.5481 4.3898 8.8830 25 7 11.1517 3.2600 8.5798 26 14 11.1548 5.4160 10.3211 27 1 12.3197 4.7447 10.9517 28 1 11.5616 6.7586 9.8343 29 1 10.0658 5.5607 11.3201 30 7 3.7541 1.2338 3.1745 31 7 2.6729 1.1357 2.4822 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5399 -0.9353 0.0004 34 1 1.8500 -0.9352 0.0004 35 1 1.3585 2.1317 0.0894 36 1 2.6213 1.4026 -0.9315 37 1 4.9048 1.7485 0.1862 38 1 5.8430 1.4001 4.7398 39 1 8.2616 2.7525 4.1956 40 1 8.5422 1.0049 4.0077 41 1 9.5777 1.5857 7.5048 42 1 10.1173 1.1093 5.8756 43 1 10.1137 4.3688 4.2955 44 1 9.4714 2.7105 4.0881 45 1 7.3303 3.5161 4.3159 46 1 7.9789 5.1720 4.5227 47 1 7.1402 2.5086 7.7605 48 1 6.1361 2.6187 6.2936 49 1 11.9116 2.9605 9.1029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048572384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:32 Heat of formation + Delta-G solvation = 204.661095 kcal Electronic energy + Delta-G solvation = -30885.109328 eV Core-core repulsion = 26854.741549 eV Total energy + Delta-G solvation = -4030.367779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.38467 -41.12318 -38.68584 -36.40627 -34.67681 -33.22841 -32.67630 -31.43663 -31.03780 -30.51046 -29.55629 -27.66639 -26.51539 -24.07825 -23.22737 -22.90914 -22.53105 -20.96005 -20.57482 -20.28753 -19.30411 -18.83880 -18.15820 -16.92359 -16.53965 -16.27118 -15.90744 -15.72107 -15.38937 -14.74634 -14.70654 -14.46235 -14.04834 -13.96068 -13.37656 -13.01290 -12.90352 -12.63647 -12.56130 -12.33338 -12.05946 -11.93372 -11.61726 -11.51725 -11.42034 -11.29360 -11.14142 -10.81347 -10.73283 -10.69638 -10.46549 -10.22305 -10.10669 -10.04348 -9.62542 -9.61460 -9.46278 -9.35130 -9.26724 -9.10841 -8.51606 -8.07513 -6.62634 -5.75437 -3.13432 0.92673 1.26480 1.65096 2.07891 3.35898 3.38623 3.41358 3.46399 3.46928 3.94389 4.06741 4.15550 4.41622 4.50530 4.61192 4.81774 4.83255 5.09720 5.22210 5.31099 5.37275 5.49471 5.59245 5.62570 5.71207 5.85527 5.88046 5.89449 5.92169 5.98915 6.10947 6.17809 6.20159 6.27652 6.38384 6.49613 6.51293 6.66771 6.74309 6.75981 6.83710 6.97148 7.05692 7.16643 7.22164 7.60380 7.60688 7.70990 7.81584 7.88553 8.31740 8.37046 9.18230 9.79325 10.64656 11.38477 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.030358 B = 0.002192 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.104191 B =12771.201361 C =13028.345005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.182 4.182 3 C 0.151 3.849 4 N -0.362 5.362 5 C 0.089 3.911 6 C -0.096 4.096 7 C 0.595 3.405 8 O -0.545 6.545 9 N -0.702 5.702 10 C 0.002 3.998 11 C -0.086 4.086 12 H 0.051 0.949 13 C -0.109 4.109 14 C 0.186 3.814 15 H 0.095 0.905 16 C -0.172 4.172 17 C -0.162 4.162 18 C 0.150 3.850 19 H 0.064 0.936 20 C -0.124 4.124 21 N -0.582 5.582 22 C -0.227 4.227 23 H 0.069 0.931 24 C 0.002 3.998 25 N -0.906 5.906 26 Si 0.907 3.093 27 H -0.291 1.291 28 H -0.285 1.285 29 H -0.285 1.285 30 N -0.205 5.205 31 N -0.061 5.061 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.205 0.795 38 H 0.402 0.598 39 H 0.196 0.804 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.042 0.958 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.406 -6.026 -18.986 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.201 4.201 3 C 0.031 3.969 4 N -0.147 5.147 5 C -0.068 4.068 6 C -0.236 4.236 7 C 0.379 3.621 8 O -0.423 6.423 9 N -0.352 5.352 10 C -0.116 4.116 11 C -0.105 4.105 12 H 0.069 0.931 13 C -0.148 4.148 14 C 0.079 3.921 15 H 0.113 0.887 16 C -0.210 4.210 17 C -0.200 4.200 18 C 0.043 3.957 19 H 0.082 0.918 20 C -0.163 4.163 21 N -0.303 5.303 22 C -0.356 4.356 23 H 0.086 0.914 24 C -0.196 4.196 25 N -0.551 5.551 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.212 1.212 29 H -0.211 1.211 30 N -0.079 5.079 31 N -0.042 5.042 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.221 0.779 38 H 0.237 0.763 39 H 0.211 0.789 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.707 -6.140 -18.353 26.231 hybrid contribution 0.547 0.220 0.357 0.689 sum -17.160 -5.920 -17.996 25.561 Atomic orbital electron populations 1.24004 0.95470 1.02873 0.96247 1.22866 0.96380 0.97396 1.03414 1.21098 0.91972 0.98182 0.85653 1.50537 1.06704 1.48352 1.09101 1.23408 0.84543 0.97999 1.00801 1.21654 0.95739 1.15724 0.90457 1.16745 0.84625 0.77549 0.83206 1.90794 1.49254 1.50457 1.51766 1.46203 1.11933 1.70119 1.06970 1.25331 0.79903 1.09839 0.96533 1.21274 0.98836 0.97960 0.92397 0.93054 1.22140 0.91433 0.98631 1.02643 1.21402 0.97189 0.88577 0.84920 0.88659 1.23413 0.95872 1.00501 1.01244 1.23312 0.97249 1.00201 0.99274 1.21536 0.89334 0.94065 0.90802 0.91807 1.22185 0.96303 0.97336 1.00508 1.45051 1.02767 1.54439 1.28051 1.18854 1.12722 1.03967 1.00061 0.91351 1.25028 1.00266 0.96371 0.97960 1.69878 1.23355 1.20732 1.41165 0.86293 0.78033 0.79406 0.82511 1.21684 1.21195 1.21105 1.74668 0.96455 1.09863 1.26889 1.82012 1.16966 1.21897 0.83276 0.87860 0.87370 0.86441 0.88004 0.86822 0.77868 0.76256 0.78904 0.93002 0.89564 0.94327 0.92735 0.89328 0.88843 0.93108 0.91806 0.93959 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 14.32 29.01 0.42 -0.16 16 2 C -0.18 -0.87 9.72 -36.03 -0.35 -1.22 16 3 C 0.15 0.67 6.98 -5.19 -0.04 0.63 16 4 N -0.36 -3.17 3.68 -62.24 -0.23 -3.40 16 5 C 0.09 0.85 11.27 -16.84 -0.19 0.66 16 6 C -0.10 -1.25 6.99 -83.55 -0.58 -1.84 16 7 C 0.60 9.01 7.58 -12.48 -0.09 8.92 16 8 O -0.55 -9.39 16.86 5.28 0.09 -9.30 16 9 N -0.70 -10.57 4.38 -61.35 -0.27 -10.84 16 10 C 0.00 0.04 2.68 -4.04 -0.01 0.03 16 11 C -0.09 -1.54 2.76 -90.47 -0.25 -1.79 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.11 -2.29 5.21 -26.00 -0.14 -2.42 16 14 C 0.19 4.22 3.13 -65.45 -0.20 4.02 16 15 H 0.10 2.47 6.91 -51.93 -0.36 2.11 16 16 C -0.17 -3.30 5.70 -25.47 -0.15 -3.44 16 17 C -0.16 -2.98 5.70 -25.48 -0.15 -3.13 16 18 C 0.15 3.10 4.33 -65.71 -0.28 2.81 16 19 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 20 C -0.12 -2.31 5.27 -26.26 -0.14 -2.45 16 21 N -0.58 -14.23 2.78 -152.42 -0.42 -14.65 16 22 C -0.23 -6.16 10.34 -15.06 -0.16 -6.32 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C 0.00 0.05 5.43 -17.43 -0.09 -0.04 16 25 N -0.91 -25.38 10.33 55.49 0.57 -24.80 16 26 Si 0.91 21.70 29.56 -169.99 -5.02 16.68 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 N -0.20 -2.82 12.04 32.85 0.40 -2.42 16 31 N -0.06 -0.75 13.63 60.35 0.82 0.07 16 32 H 0.10 0.30 7.84 -52.49 -0.41 -0.12 16 33 H 0.11 0.34 8.06 -52.49 -0.42 -0.08 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.10 0.33 7.79 -51.93 -0.40 -0.07 16 36 H 0.11 0.17 8.08 -51.92 -0.42 -0.25 16 37 H 0.20 1.28 8.06 -52.48 -0.42 0.85 16 38 H 0.40 5.74 7.01 -40.82 -0.29 5.46 16 39 H 0.20 3.37 1.11 -166.17 -0.18 3.19 16 40 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 41 H 0.09 2.11 7.39 -51.93 -0.38 1.73 16 42 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.09 1.58 4.85 -51.93 -0.25 1.33 16 45 H 0.09 1.61 3.95 -51.93 -0.21 1.41 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 48 H 0.04 0.69 6.73 -51.93 -0.35 0.34 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -32.04 380.83 -7.75 -39.79 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.02 Total: 8.90 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.40 Total: -5.76 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.87 Total: -56.04 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.04 -7.75 -39.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048572384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.449 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds