Wall clock time and date at job start Wed Apr 1 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99679 * 2 1 4 4 N 1.46497 * 109.47340 * 124.99990 * 3 2 1 5 5 C 1.34809 * 126.60036 * 125.29375 * 4 3 2 6 6 C 1.36594 * 106.84289 * 180.13016 * 5 4 3 7 7 C 1.47523 * 125.77249 * 179.89703 * 6 5 4 8 8 O 1.21597 * 120.00139 * 359.71064 * 7 6 5 9 9 N 1.34777 * 120.00248 * 179.71741 * 7 6 5 10 10 C 1.46500 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46900 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.43554 * 59.82854 * 11 10 9 13 13 C 1.53153 * 109.43487 * 179.69415 * 11 10 9 14 14 C 1.54245 * 108.84149 * 66.08408 * 13 11 10 15 15 H 1.09003 * 112.33394 * 187.68952 * 14 13 11 16 16 C 1.54612 * 107.85985 * 312.47604 * 14 13 11 17 17 C 1.53793 * 104.84767 * 88.46883 * 16 14 13 18 18 C 1.54605 * 104.85403 * 0.02562 * 17 16 14 19 19 H 1.09000 * 112.69780 * 146.96041 * 18 17 16 20 20 C 1.53140 * 109.43617 * 299.91976 * 11 10 9 21 21 N 1.48290 * 106.99158 * 64.13340 * 14 13 11 22 22 C 1.36935 * 128.21074 * 107.52883 * 21 14 13 23 23 H 1.07998 * 120.00212 * 154.74284 * 22 21 14 24 24 C 1.38809 * 120.00049 * 334.73788 * 22 21 14 25 25 N 1.31625 * 120.00079 * 354.98212 * 24 22 21 26 26 Si 1.86799 * 120.00272 * 174.97930 * 24 22 21 27 27 H 1.48498 * 109.47293 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.47079 * 300.00517 * 26 24 22 29 29 H 1.48496 * 109.47059 * 60.00221 * 26 24 22 30 30 N 1.34399 * 108.46071 * 359.63518 * 6 5 4 31 31 N 1.28760 * 109.51988 * 0.22348 * 30 6 5 32 32 H 1.08001 * 119.99923 * 0.02562 * 1 2 3 33 33 H 1.08001 * 119.99600 * 180.02562 * 1 2 3 34 34 H 1.07995 * 120.00210 * 179.97438 * 2 1 3 35 35 H 1.08998 * 109.47360 * 4.99224 * 3 2 1 36 36 H 1.09010 * 109.46882 * 244.99742 * 3 2 1 37 37 H 1.08006 * 126.57858 * 359.97438 * 5 4 3 38 38 H 0.96996 * 119.99758 * 359.97438 * 9 7 6 39 39 H 1.08991 * 109.47386 * 59.99751 * 10 9 7 40 40 H 1.09004 * 109.47065 * 299.99629 * 10 9 7 41 41 H 1.09004 * 109.57097 * 185.99514 * 13 11 10 42 42 H 1.09007 * 109.56777 * 306.23684 * 13 11 10 43 43 H 1.08997 * 110.38536 * 207.17397 * 16 14 13 44 44 H 1.09000 * 110.38032 * 329.54206 * 16 14 13 45 45 H 1.09001 * 110.43537 * 241.09801 * 17 16 14 46 46 H 1.09003 * 110.24096 * 118.80256 * 17 16 14 47 47 H 1.09005 * 109.57260 * 174.00759 * 20 11 10 48 48 H 1.09000 * 109.67132 * 53.70424 * 20 11 10 49 49 H 0.96998 * 120.00242 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3219 1.5554 1.0747 6 6 4.7898 1.4871 2.3562 7 6 6.1936 1.6671 2.7725 8 8 7.0504 1.8936 1.9400 9 7 6.5265 1.5805 4.0756 10 6 7.9204 1.7599 4.4891 11 6 8.0245 1.6138 6.0085 12 1 7.6802 0.6222 6.3020 13 6 9.4832 1.7939 6.4391 14 6 9.9106 3.2484 6.1545 15 1 10.9774 3.4055 6.3144 16 6 9.4648 3.6010 4.7166 17 6 8.0324 4.1398 4.8691 18 6 7.7404 4.0656 6.3855 19 1 7.0885 4.8692 6.7282 20 6 7.1523 2.6764 6.6835 21 7 9.0799 4.1212 7.0189 22 6 9.4609 4.8186 8.1340 23 1 8.9155 5.7022 8.4310 24 6 10.5481 4.3898 8.8830 25 7 11.1517 3.2600 8.5798 26 14 11.1548 5.4160 10.3211 27 1 12.3197 4.7447 10.9517 28 1 11.5616 6.7586 9.8343 29 1 10.0658 5.5607 11.3201 30 7 3.7541 1.2338 3.1745 31 7 2.6729 1.1357 2.4822 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5399 -0.9353 0.0004 34 1 1.8500 -0.9352 0.0004 35 1 1.3585 2.1317 0.0894 36 1 2.6213 1.4026 -0.9315 37 1 4.9048 1.7485 0.1862 38 1 5.8430 1.4001 4.7398 39 1 8.2616 2.7525 4.1956 40 1 8.5422 1.0049 4.0077 41 1 9.5777 1.5857 7.5048 42 1 10.1173 1.1093 5.8756 43 1 10.1137 4.3688 4.2955 44 1 9.4714 2.7105 4.0881 45 1 7.3303 3.5161 4.3159 46 1 7.9789 5.1720 4.5227 47 1 7.1402 2.5086 7.7605 48 1 6.1361 2.6187 6.2936 49 1 11.9116 2.9605 9.1029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048572384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:31 Heat of formation + Delta-G solvation = 184.215738 kcal Electronic energy + Delta-G solvation = -30885.995905 eV Core-core repulsion = 26854.741549 eV Total energy + Delta-G solvation = -4031.254357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.21752 -42.62845 -39.92791 -36.88930 -36.17599 -34.52809 -33.72396 -32.96103 -32.35191 -31.88016 -31.22980 -28.53492 -27.79258 -25.63396 -24.81388 -24.18392 -23.27321 -22.14118 -21.78080 -21.09694 -20.78129 -20.40323 -19.20434 -18.59491 -17.68900 -17.08245 -17.03628 -16.85337 -16.33790 -16.11011 -15.91197 -15.48923 -15.38416 -14.91918 -14.53612 -14.49208 -14.36772 -14.14920 -13.65595 -13.47388 -13.31111 -13.10839 -13.03648 -13.02372 -12.79509 -12.65179 -12.49998 -12.47847 -12.27125 -12.25144 -11.97074 -11.51098 -11.34313 -11.26959 -11.12014 -10.95516 -10.82480 -10.76325 -10.56054 -10.45981 -10.27546 -9.44066 -8.57390 -7.82494 -5.20842 0.19503 0.67791 0.81780 1.48298 1.49604 1.55771 1.61935 2.25124 2.31921 2.52816 3.25524 3.35705 3.47115 3.64408 3.82026 3.87049 3.98368 3.98992 4.02099 4.09992 4.14080 4.28526 4.33236 4.42199 4.49091 4.55895 4.59209 4.64044 4.76111 4.77293 4.83135 4.94271 4.95072 5.03680 5.07058 5.14770 5.23630 5.33364 5.43100 5.44158 5.52406 5.56893 5.57858 5.58540 5.64622 5.68439 5.80863 5.96480 6.34618 6.52768 6.95876 7.14634 7.22529 7.79077 8.65637 9.29796 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.030358 B = 0.002192 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.104191 B =12771.201361 C =13028.345005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.197 4.197 3 C 0.142 3.858 4 N -0.347 5.347 5 C 0.110 3.890 6 C -0.125 4.125 7 C 0.599 3.401 8 O -0.568 6.568 9 N -0.701 5.701 10 C 0.015 3.985 11 C -0.076 4.076 12 H 0.064 0.936 13 C -0.101 4.101 14 C 0.181 3.819 15 H 0.055 0.945 16 C -0.162 4.162 17 C -0.149 4.149 18 C 0.142 3.858 19 H 0.062 0.938 20 C -0.115 4.115 21 N -0.603 5.603 22 C -0.240 4.240 23 H 0.066 0.934 24 C -0.050 4.050 25 N -0.927 5.927 26 Si 0.968 3.032 27 H -0.295 1.295 28 H -0.282 1.282 29 H -0.280 1.280 30 N -0.228 5.228 31 N -0.086 5.086 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.150 0.850 37 H 0.239 0.761 38 H 0.407 0.593 39 H 0.189 0.811 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.037 0.963 48 H 0.072 0.928 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.463 -5.922 -21.543 29.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.216 4.216 3 C 0.024 3.976 4 N -0.132 5.132 5 C -0.048 4.048 6 C -0.265 4.265 7 C 0.384 3.616 8 O -0.447 6.447 9 N -0.352 5.352 10 C -0.104 4.104 11 C -0.095 4.095 12 H 0.082 0.918 13 C -0.141 4.141 14 C 0.074 3.926 15 H 0.073 0.927 16 C -0.200 4.200 17 C -0.187 4.187 18 C 0.035 3.965 19 H 0.080 0.920 20 C -0.155 4.155 21 N -0.325 5.325 22 C -0.370 4.370 23 H 0.084 0.916 24 C -0.245 4.245 25 N -0.573 5.573 26 Si 0.797 3.203 27 H -0.221 1.221 28 H -0.208 1.208 29 H -0.206 1.206 30 N -0.102 5.102 31 N -0.066 5.066 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.167 0.833 37 H 0.255 0.745 38 H 0.243 0.757 39 H 0.204 0.796 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.832 -6.039 -20.928 29.458 hybrid contribution 1.072 0.170 1.046 1.507 sum -18.760 -5.868 -19.882 27.959 Atomic orbital electron populations 1.24202 0.95377 1.03729 0.94849 1.22872 0.96723 0.97334 1.04660 1.21596 0.92220 0.98424 0.85401 1.50839 1.07106 1.46330 1.08882 1.23898 0.84760 0.95493 1.00635 1.21511 0.94709 1.18354 0.91894 1.16943 0.85393 0.76579 0.82647 1.90779 1.50186 1.51530 1.52177 1.46072 1.11177 1.70454 1.07451 1.24957 0.81127 1.09418 0.94901 1.21124 0.96407 0.98338 0.93585 0.91805 1.21943 0.93979 0.97899 1.00296 1.21339 0.95018 0.89329 0.86896 0.92678 1.23352 0.96280 1.01444 0.98919 1.23230 0.96944 1.00992 0.97556 1.21749 0.87770 0.95022 0.91928 0.91990 1.22063 0.97955 0.96361 0.99089 1.45247 1.04843 1.54539 1.27920 1.19126 1.12705 1.04207 1.00921 0.91625 1.25715 1.00826 0.97597 1.00365 1.70058 1.23458 1.21971 1.41854 0.85336 0.77217 0.77987 0.79774 1.22130 1.20785 1.20650 1.74635 0.96914 1.10645 1.27960 1.81928 1.16786 1.22851 0.85035 0.86661 0.86984 0.87357 0.86437 0.83284 0.74478 0.75701 0.79589 0.92833 0.93625 0.93177 0.92695 0.87350 0.86994 0.92506 0.94445 0.90973 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 14.32 67.78 0.97 0.17 16 2 C -0.20 -1.43 9.72 25.65 0.25 -1.18 16 3 C 0.14 0.75 6.98 85.63 0.60 1.35 16 4 N -0.35 -5.05 3.68 -350.83 -1.29 -6.34 16 5 C 0.11 1.73 11.27 83.85 0.95 2.68 16 6 C -0.12 -2.96 6.99 40.82 0.29 -2.68 16 7 C 0.60 16.77 7.58 86.69 0.66 17.42 16 8 O -0.57 -18.12 16.86 -4.02 -0.07 -18.19 16 9 N -0.70 -19.59 4.38 -466.28 -2.04 -21.63 16 10 C 0.02 0.47 2.68 86.38 0.23 0.70 16 11 C -0.08 -2.66 2.76 -10.70 -0.03 -2.69 16 12 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.10 -4.34 5.21 31.07 0.16 -4.17 16 14 C 0.18 8.39 3.13 45.62 0.14 8.54 16 15 H 0.05 2.98 6.91 -2.39 -0.02 2.97 16 16 C -0.16 -6.07 5.70 31.41 0.18 -5.89 16 17 C -0.15 -5.25 5.70 31.41 0.18 -5.08 16 18 C 0.14 5.79 4.33 45.45 0.20 5.99 16 19 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 20 C -0.12 -4.24 5.27 30.90 0.16 -4.07 16 21 N -0.60 -30.13 2.78 -636.15 -1.77 -31.90 16 22 C -0.24 -13.36 10.34 84.03 0.87 -12.49 16 23 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 24 C -0.05 -2.78 5.43 84.86 0.46 -2.32 16 25 N -0.93 -54.00 10.33 21.65 0.22 -53.77 16 26 Si 0.97 45.73 29.56 68.60 2.03 47.76 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 29 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 30 N -0.23 -5.91 12.04 -50.00 -0.60 -6.51 16 31 N -0.09 -1.96 13.63 37.02 0.50 -1.45 16 32 H 0.12 0.34 7.84 -2.91 -0.02 0.32 16 33 H 0.11 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.12 0.32 7.79 -2.39 -0.02 0.30 16 36 H 0.15 -0.24 8.08 -2.38 -0.02 -0.26 16 37 H 0.24 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.41 10.77 7.01 -92.71 -0.65 10.12 16 39 H 0.19 6.11 1.11 -109.69 -0.12 5.99 16 40 H 0.05 1.69 8.00 -2.39 -0.02 1.67 16 41 H 0.04 2.32 7.39 -2.38 -0.02 2.30 16 42 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.11 3.67 4.85 -2.39 -0.01 3.66 16 45 H 0.11 3.58 3.95 -2.39 -0.01 3.57 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.04 1.56 8.14 -2.38 -0.02 1.55 16 48 H 0.07 2.22 6.73 -2.39 -0.02 2.21 16 49 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -71.90 380.83 3.46 -68.44 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.22 Total: 27.29 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 6.26 Total: -3.71 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -4.98 Total: -121.59 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.07 Total: -18.19 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.90 3.46 -68.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048572384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.658 kcal (2) G-P(sol) polarization free energy of solvation -71.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds