Wall clock time and date at job start Wed Apr 1 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.29114 * 126.00806 * 2 1 4 4 N 1.29016 * 110.25594 * 180.02562 * 3 2 1 5 5 C 1.32906 * 108.64072 * 0.03059 * 4 3 2 6 6 C 1.34397 * 126.00854 * 179.97438 * 2 1 3 7 7 C 1.50541 * 129.25276 * 359.80085 * 6 2 1 8 8 C 1.53434 * 108.32703 * 196.45661 * 7 6 2 9 9 H 1.09007 * 109.45421 * 70.31308 * 8 7 6 10 10 C 1.50698 * 109.45898 * 190.26793 * 8 7 6 11 11 O 1.21277 * 120.00293 * 85.19492 * 10 8 7 12 12 N 1.34779 * 119.99886 * 265.19337 * 10 8 7 13 13 C 1.46658 * 125.33513 * 185.20806 * 12 10 8 14 14 C 1.53671 * 107.96947 * 180.71171 * 13 12 10 15 15 H 1.09003 * 112.77353 * 140.61044 * 14 13 12 16 16 C 1.53982 * 109.29434 * 266.92779 * 14 13 12 17 17 N 1.46762 * 106.67663 * 138.84045 * 16 14 13 18 18 C 1.36938 * 125.33797 * 161.58594 * 17 16 14 19 19 H 1.07999 * 119.99496 * 5.07503 * 18 17 16 20 20 C 1.38806 * 119.99913 * 185.06957 * 18 17 16 21 21 N 1.31614 * 120.00238 * 354.45683 * 20 18 17 22 22 Si 1.86803 * 119.99827 * 174.45153 * 20 18 17 23 23 H 1.48501 * 109.47053 * 94.99863 * 22 20 18 24 24 H 1.48500 * 109.47431 * 214.99844 * 22 20 18 25 25 H 1.48500 * 109.47234 * 335.00070 * 22 20 18 26 26 C 1.46659 * 109.32804 * 341.54957 * 17 16 14 27 27 C 1.53672 * 107.97168 * 0.70939 * 26 17 16 28 28 H 1.09003 * 112.77374 * 139.89133 * 27 26 17 29 29 C 1.46763 * 125.33160 * 4.90360 * 12 10 8 30 30 C 1.53108 * 109.54966 * 310.29263 * 8 7 6 31 31 C 1.50597 * 129.16488 * 179.76944 * 5 4 3 32 32 H 1.09007 * 109.46552 * 89.97839 * 1 2 3 33 33 H 1.08994 * 109.47236 * 209.97617 * 1 2 3 34 34 H 1.08994 * 109.47179 * 329.97886 * 1 2 3 35 35 H 1.08998 * 109.69279 * 316.17285 * 7 6 2 36 36 H 1.08997 * 109.68886 * 76.75077 * 7 6 2 37 37 H 1.08999 * 109.76669 * 300.33869 * 13 12 10 38 38 H 1.08999 * 109.76853 * 61.06389 * 13 12 10 39 39 H 1.08998 * 110.01715 * 258.13989 * 16 14 13 40 40 H 1.08998 * 110.02026 * 19.53483 * 16 14 13 41 41 H 0.97009 * 120.00125 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.76705 * 120.34382 * 26 17 16 43 43 H 1.09007 * 109.76713 * 241.08451 * 26 17 16 44 44 H 1.09003 * 110.01728 * 280.84813 * 29 12 10 45 45 H 1.08995 * 110.02281 * 42.24262 * 29 12 10 46 46 H 1.09001 * 109.45210 * 190.10781 * 30 8 7 47 47 H 1.08997 * 109.45659 * 310.04227 * 30 8 7 48 48 H 1.09001 * 109.69384 * 76.87494 * 31 5 4 49 49 H 1.09002 * 109.69385 * 316.29896 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0016 6 6 2.2551 -1.0872 0.0005 7 6 1.8721 -2.5430 0.0052 8 6 3.1014 -3.3640 0.4164 9 1 3.3145 -3.1948 1.4720 10 6 2.8266 -4.8280 0.1884 11 8 3.0144 -5.3172 -0.9054 12 7 2.3720 -5.5939 1.2000 13 6 2.1693 -7.0452 1.1403 14 6 1.6257 -7.5044 2.5023 15 1 0.8564 -8.2714 2.4127 16 6 2.8000 -7.9388 3.3985 17 7 2.5166 -7.4237 4.7432 18 6 3.0983 -7.8681 5.9005 19 1 3.8890 -8.6026 5.8599 20 6 2.6716 -7.3745 7.1257 21 7 1.7862 -6.4018 7.1711 22 14 3.3540 -8.0910 8.7101 23 1 4.4968 -7.2646 9.1753 24 1 2.2924 -8.0968 9.7485 25 1 3.8155 -9.4813 8.4663 26 6 1.5133 -6.3577 4.6532 27 6 1.1243 -6.1964 3.1753 28 1 0.0563 -6.0282 3.0361 29 6 2.0084 -5.1071 2.5359 30 6 4.3081 -2.9348 -0.4226 31 6 4.7468 -1.5242 -0.0072 32 1 -0.3633 0.0004 -1.0278 33 1 -0.3633 -0.8901 0.5134 34 1 -0.3633 0.8897 0.5141 35 1 1.0647 -2.7081 0.7185 36 1 1.5484 -2.8408 -0.9921 37 1 1.4506 -7.2850 0.3567 38 1 3.1176 -7.5418 0.9351 39 1 2.8686 -9.0264 3.4225 40 1 3.7317 -7.5139 3.0249 41 1 1.4877 -6.0571 8.0274 42 1 0.6345 -6.6283 5.2384 43 1 1.9329 -5.4240 5.0280 44 1 2.9065 -4.9530 3.1341 45 1 1.4496 -4.1749 2.4541 46 1 5.1296 -3.6328 -0.2606 47 1 4.0351 -2.9348 -1.4778 48 1 5.1850 -1.5543 0.9903 49 1 5.4789 -1.1430 -0.7192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049006667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:40 Heat of formation + Delta-G solvation = 68.302310 kcal Electronic energy + Delta-G solvation = -31107.478538 eV Core-core repulsion = 27071.197798 eV Total energy + Delta-G solvation = -4036.280740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.44559 -41.65926 -39.95983 -37.60240 -36.57935 -35.91022 -34.08975 -32.09308 -31.57260 -31.53045 -30.93017 -28.73189 -27.38576 -27.04961 -25.78905 -24.69921 -23.61485 -22.40006 -21.93446 -21.16545 -20.75786 -19.88585 -18.89609 -18.24240 -18.05039 -17.68371 -17.19603 -16.69153 -16.33472 -16.11996 -15.55356 -15.44544 -14.98562 -14.93434 -14.83650 -14.69463 -14.30479 -14.20583 -14.05290 -13.64726 -13.54695 -13.44823 -13.39938 -13.21844 -13.08654 -12.96111 -12.68698 -12.63970 -12.52862 -12.18028 -11.99979 -11.97111 -11.84988 -11.69547 -11.57083 -11.50051 -11.42203 -10.95565 -10.83990 -10.63719 -9.89946 -9.63598 -8.84520 -7.84680 -5.17763 0.52612 1.35281 1.45446 1.48096 1.48884 1.57709 1.60991 1.97108 2.51059 3.06632 3.30229 3.34911 3.48037 3.52929 3.67677 3.72276 3.77794 3.83703 3.92061 3.98264 4.11142 4.23970 4.25727 4.28276 4.33208 4.39141 4.47036 4.50836 4.56928 4.61837 4.65604 4.74869 4.80816 4.86479 4.90567 4.95162 4.99775 5.04858 5.05489 5.18013 5.19295 5.23943 5.32000 5.39257 5.51141 5.61761 5.67783 5.82622 6.24467 6.50363 7.09778 7.15241 7.43706 7.82591 8.43529 9.25161 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.002771 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.405307 B =10101.826778 C =10902.078919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.275 5.275 3 N -0.127 5.127 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.011 4.011 7 C -0.022 4.022 8 C -0.094 4.094 9 H 0.103 0.897 10 C 0.539 3.461 11 O -0.571 6.571 12 N -0.608 5.608 13 C 0.123 3.877 14 C -0.095 4.095 15 H 0.116 0.884 16 C 0.138 3.862 17 N -0.624 5.624 18 C -0.243 4.243 19 H 0.077 0.923 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.970 3.030 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.195 3.805 27 C -0.108 4.108 28 H 0.118 0.882 29 C 0.118 3.882 30 C -0.094 4.094 31 C -0.028 4.028 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.014 0.986 41 H 0.247 0.753 42 H 0.017 0.983 43 H 0.015 0.985 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 7.817 -16.435 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.067 5.067 3 N -0.104 5.104 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.061 4.061 8 C -0.116 4.116 9 H 0.121 0.879 10 C 0.329 3.671 11 O -0.451 6.451 12 N -0.340 5.340 13 C 0.000 4.000 14 C -0.115 4.115 15 H 0.134 0.866 16 C 0.013 3.987 17 N -0.350 5.350 18 C -0.372 4.372 19 H 0.095 0.905 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.799 3.201 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.070 3.930 27 C -0.128 4.128 28 H 0.136 0.864 29 C -0.005 4.005 30 C -0.132 4.132 31 C -0.067 4.067 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.087 9.240 -16.860 19.887 hybrid contribution 0.340 -1.272 1.430 1.944 sum -4.748 7.968 -15.429 18.003 Atomic orbital electron populations 1.22793 0.69881 1.07880 1.06930 1.47213 1.10733 1.03728 1.45060 1.78494 0.96325 1.12484 1.23121 1.74738 1.10467 1.13325 1.17795 1.22129 0.96520 0.90996 1.07791 1.21860 0.90926 0.92643 1.09232 1.20014 0.97433 0.84001 1.04701 1.21297 0.97289 0.89631 1.03398 0.87883 1.20345 0.75808 0.88517 0.82451 1.90686 1.53989 1.75564 1.24836 1.48408 1.64197 1.08595 1.12777 1.21696 1.00966 0.80376 0.96967 1.22799 0.97868 0.97998 0.92832 0.86632 1.21486 0.95363 0.96959 0.84900 1.44520 1.47644 1.40912 1.01906 1.19362 1.14206 1.19349 0.84271 0.90525 1.25521 0.99938 0.99334 1.00340 1.70138 1.35905 1.29163 1.24064 0.85186 0.76908 0.78271 0.79708 1.21688 1.21979 1.19639 1.20738 0.91187 0.90457 0.90613 1.23079 1.00379 0.94066 0.95254 0.86409 1.22133 0.98408 0.98182 0.81769 1.21430 0.96451 0.95372 0.99964 1.20012 0.92099 0.90803 1.03817 0.87003 0.85711 0.86946 0.87122 0.88056 0.90007 0.91940 0.94496 0.96850 0.94356 0.96513 0.96702 0.92877 0.88251 0.90007 0.90638 0.89091 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 11.27 127.77 1.44 1.92 16 2 N -0.27 -5.15 3.73 -356.42 -1.33 -6.48 16 3 N -0.13 -3.33 13.19 37.02 0.49 -2.84 16 4 N -0.30 -8.63 12.40 -48.99 -0.61 -9.24 16 5 C -0.03 -0.78 7.11 41.75 0.30 -0.48 16 6 C -0.01 -0.22 6.76 41.50 0.28 0.06 16 7 C -0.02 -0.32 5.26 29.94 0.16 -0.17 16 8 C -0.09 -1.74 1.97 -11.36 -0.02 -1.77 16 9 H 0.10 1.89 7.16 -2.38 -0.02 1.87 16 10 C 0.54 12.91 6.79 87.66 0.60 13.50 16 11 O -0.57 -17.15 16.76 -3.02 -0.05 -17.20 16 12 N -0.61 -14.80 3.31 -817.14 -2.71 -17.50 16 13 C 0.12 3.05 6.19 86.57 0.54 3.58 16 14 C -0.10 -2.68 4.10 -9.41 -0.04 -2.72 16 15 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 16 C 0.14 5.15 6.42 86.66 0.56 5.71 16 17 N -0.62 -29.63 3.38 -697.72 -2.36 -31.98 16 18 C -0.24 -13.01 10.24 84.03 0.86 -12.15 16 19 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.06 -3.14 5.48 84.86 0.47 -2.68 16 21 N -0.94 -53.47 10.28 21.65 0.22 -53.25 16 22 Si 0.97 44.19 29.56 68.60 2.03 46.22 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C 0.20 8.45 4.73 86.58 0.41 8.86 16 27 C -0.11 -3.15 4.12 -9.34 -0.04 -3.19 16 28 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 29 C 0.12 2.95 5.22 86.73 0.45 3.40 16 30 C -0.09 -1.72 4.72 30.78 0.15 -1.58 16 31 C -0.03 -0.53 6.30 29.97 0.19 -0.34 16 32 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.12 0.32 7.71 -2.39 -0.02 0.30 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 1.12 7.51 -2.39 -0.02 1.10 16 36 H 0.10 1.41 8.12 -2.39 -0.02 1.39 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.66 7.63 -2.39 -0.02 1.64 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 41 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 42 H 0.02 0.83 7.24 -2.39 -0.02 0.82 16 43 H 0.01 0.72 7.07 -2.38 -0.02 0.71 16 44 H 0.05 1.63 7.58 -2.39 -0.02 1.61 16 45 H 0.10 1.86 7.51 -2.39 -0.02 1.84 16 46 H 0.08 1.51 8.11 -2.39 -0.02 1.50 16 47 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -74.77 383.22 2.93 -71.85 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.95 Total: 8.44 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.29 Total: 11.98 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -6.29 Total: -121.30 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -74.77 2.93 -71.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049006667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.148 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds