Wall clock time and date at job start Wed Apr 1 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.34776 * 125.65202 * 178.90366 * 5 4 2 7 7 O 1.21473 * 119.99954 * 0.02562 * 6 5 4 8 8 C 1.48467 * 120.00155 * 179.97438 * 6 5 4 9 9 C 1.39503 * 120.50127 * 179.72645 * 8 6 5 10 10 C 1.38783 * 118.42136 * 179.73413 * 9 8 6 11 11 N 1.32137 * 119.24477 * 0.53912 * 10 9 8 12 12 C 1.32570 * 120.95670 * 359.72104 * 11 10 9 13 13 N 1.38435 * 119.13499 * 180.02562 * 12 11 10 14 14 C 1.48530 * 110.99687 * 242.58124 * 13 12 11 15 15 C 1.54932 * 103.22906 * 159.72044 * 14 13 12 16 16 C 1.54598 * 102.91889 * 322.58553 * 15 14 13 17 17 C 1.47894 * 111.00044 * 359.97438 * 13 12 11 18 18 N 1.32287 * 121.72537 * 359.97438 * 12 11 10 19 19 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 20 20 C 1.55118 * 104.94414 * 24.00601 * 19 5 4 21 21 H 1.09001 * 111.16500 * 205.13121 * 20 19 5 22 22 N 1.46502 * 110.93754 * 81.21163 * 20 19 5 23 23 C 1.36943 * 119.99898 * 92.95693 * 22 20 19 24 24 H 1.08000 * 119.99653 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99718 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00623 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99709 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46982 * 60.00518 * 27 25 23 29 29 H 1.48502 * 109.47133 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47469 * 300.00385 * 27 25 23 31 31 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 32 32 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 33 33 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 34 34 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 35 35 H 1.08997 * 109.89082 * 99.87264 * 4 2 1 36 36 H 1.07996 * 120.79406 * 359.97438 * 9 8 6 37 37 H 1.07995 * 120.37402 * 180.25707 * 10 9 8 38 38 H 1.09010 * 110.66531 * 278.15736 * 14 13 12 39 39 H 1.09006 * 110.66938 * 41.27996 * 14 13 12 40 40 H 1.09000 * 110.72664 * 204.22498 * 15 14 13 41 41 H 1.09004 * 110.72295 * 80.94146 * 15 14 13 42 42 H 1.09002 * 110.30471 * 263.03960 * 16 15 14 43 43 H 1.09001 * 110.30726 * 140.87510 * 16 15 14 44 44 H 1.09008 * 109.92099 * 333.51049 * 17 13 12 45 45 H 1.09001 * 109.92249 * 94.80496 * 17 13 12 46 46 H 1.09003 * 110.36619 * 142.96814 * 19 5 4 47 47 H 1.09004 * 110.37083 * 265.18300 * 19 5 4 48 48 H 0.96998 * 120.00200 * 272.96262 * 22 20 19 49 49 H 0.96998 * 120.00478 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 3.9915 -2.3822 -1.4932 7 8 3.7178 -2.5537 -2.6642 8 6 5.1497 -3.0889 -0.8904 9 6 5.9265 -3.9575 -1.6574 10 6 7.0024 -4.5911 -1.0516 11 7 7.2501 -4.3628 0.2261 12 6 6.4905 -3.5359 0.9309 13 7 6.7845 -3.3238 2.2669 14 6 5.6695 -3.7793 3.1360 15 6 6.3487 -3.9647 4.5162 16 6 7.7375 -4.5329 4.1444 17 6 7.9659 -4.1112 2.6810 18 7 5.4595 -2.9073 0.3906 19 6 3.4633 -1.2509 0.6855 20 6 2.0790 -0.7933 1.2152 21 1 2.1850 -0.1481 2.0874 22 7 1.2271 -1.9461 1.5179 23 6 1.2021 -2.4652 2.7849 24 1 1.8102 -2.0244 3.5610 25 6 0.3954 -3.5578 3.0714 26 7 -0.3452 -4.0952 2.1254 27 14 0.3608 -4.2654 4.7999 28 1 -0.0964 -3.2221 5.7528 29 1 -0.5726 -5.4196 4.8437 30 1 1.7241 -4.7172 5.1773 31 1 -0.3633 -1.0276 -0.0125 32 1 -0.3633 0.5246 -0.8837 33 1 -0.3634 0.5030 0.8962 34 1 1.3130 -1.4732 -1.5800 35 1 2.3716 -0.0992 -1.9990 36 1 5.6986 -4.1297 -2.6989 37 1 7.6273 -5.2666 -1.6168 38 1 4.8891 -3.0201 3.1901 39 1 5.2633 -4.7249 2.7770 40 1 5.7923 -4.6751 5.1276 41 1 6.4480 -3.0078 5.0288 42 1 7.7367 -5.6196 4.2293 43 1 8.5064 -4.1031 4.7864 44 1 8.0626 -4.9953 2.0507 45 1 8.8648 -3.4991 2.6070 46 1 3.7960 -2.1446 1.2135 47 1 4.1946 -0.4504 0.7979 48 1 0.6808 -2.3418 0.8208 49 1 -0.9087 -4.8590 2.3256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054819352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:24 Heat of formation + Delta-G solvation = 48.572907 kcal Electronic energy + Delta-G solvation = -31864.700423 eV Core-core repulsion = 27827.564152 eV Total energy + Delta-G solvation = -4037.136271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58672 -41.06847 -39.66097 -38.92684 -35.75380 -35.15679 -34.10798 -33.72040 -32.21062 -30.87964 -30.03253 -29.35774 -28.11383 -26.12998 -25.69976 -24.99915 -23.55899 -22.55665 -21.95720 -20.85101 -20.67341 -19.45956 -18.98585 -18.67691 -17.48528 -17.35351 -17.03293 -16.79255 -16.59851 -16.32011 -16.11153 -15.64808 -15.42052 -15.04081 -14.85476 -14.64959 -14.42494 -14.18686 -13.99223 -13.64065 -13.57159 -13.39011 -13.28435 -13.01144 -12.87991 -12.76951 -12.46329 -12.28937 -12.20924 -12.20106 -12.12805 -11.98718 -11.81118 -11.60515 -11.49232 -11.44232 -11.30134 -11.20503 -10.94753 -10.27614 -9.78230 -9.50552 -8.92988 -7.89799 -5.16968 -0.64258 -0.13100 1.47775 1.49850 1.54704 1.55501 1.75269 2.10245 2.58207 2.64043 2.85757 3.25436 3.41636 3.46176 3.64382 3.67450 3.78319 3.86781 3.92366 3.96835 4.04495 4.10980 4.12623 4.26857 4.42343 4.47296 4.52575 4.62863 4.69858 4.72051 4.79279 4.83908 4.89691 4.92104 4.97554 5.00861 5.03359 5.09275 5.11242 5.20511 5.23258 5.29631 5.47460 5.50659 5.53635 5.56159 5.61317 6.01792 6.30593 6.36299 6.77832 6.97104 7.38041 8.13012 8.36598 9.33534 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.007653 B = 0.005423 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.903327 B = 5162.387518 C = 7700.862272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 H 0.116 0.884 4 C 0.112 3.888 5 N -0.580 5.580 6 C 0.570 3.430 7 O -0.566 6.566 8 C 0.138 3.862 9 C -0.199 4.199 10 C 0.184 3.816 11 N -0.541 5.541 12 C 0.468 3.532 13 N -0.451 5.451 14 C 0.054 3.946 15 C -0.119 4.119 16 C -0.122 4.122 17 C 0.038 3.962 18 N -0.505 5.505 19 C 0.086 3.914 20 C 0.158 3.842 21 H 0.085 0.915 22 N -0.717 5.717 23 C -0.226 4.226 24 H 0.081 0.919 25 C -0.073 4.073 26 N -0.972 5.972 27 Si 0.962 3.038 28 H -0.276 1.276 29 H -0.305 1.305 30 H -0.275 1.275 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.172 0.828 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.372 0.628 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.403 3.159 -1.271 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.120 4.120 3 H 0.134 0.866 4 C -0.010 4.010 5 N -0.310 5.310 6 C 0.356 3.644 7 O -0.446 6.446 8 C -0.010 4.010 9 C -0.224 4.224 10 C 0.015 3.985 11 N -0.261 5.261 12 C 0.111 3.889 13 N -0.172 5.172 14 C -0.072 4.072 15 C -0.157 4.157 16 C -0.160 4.160 17 C -0.088 4.088 18 N -0.225 5.225 19 C -0.039 4.039 20 C 0.047 3.953 21 H 0.103 0.897 22 N -0.356 5.356 23 C -0.358 4.358 24 H 0.099 0.901 25 C -0.265 4.265 26 N -0.623 5.623 27 Si 0.791 3.209 28 H -0.202 1.202 29 H -0.232 1.232 30 H -0.201 1.201 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.190 0.810 37 H 0.242 0.758 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.205 0.795 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.583 3.770 -0.637 17.994 hybrid contribution -1.105 -1.636 -0.621 2.070 sum 16.478 2.134 -1.258 16.663 Atomic orbital electron populations 1.21510 0.93534 1.01172 1.01929 1.22536 0.96871 0.99651 0.92981 0.86593 1.22152 0.86645 0.94286 0.97905 1.48324 1.28372 1.41514 1.12755 1.17764 0.82259 0.79306 0.85041 1.90716 1.71713 1.65608 1.16548 1.21440 0.94759 0.95143 0.89699 1.23020 0.96822 0.98524 1.04001 1.23927 0.92329 0.93329 0.88871 1.68321 1.32107 1.15862 1.09783 1.21502 0.86573 0.87199 0.93588 1.61363 1.07170 1.51330 0.97321 1.23192 0.92483 0.98635 0.92873 1.22540 0.95976 1.02923 0.94255 1.22454 0.97344 1.01684 0.94556 1.23052 0.91345 0.97626 0.96784 1.68243 1.17447 1.25020 1.11829 1.23565 0.99268 1.02011 0.79057 1.21756 0.88679 0.88820 0.96013 0.89697 1.42476 1.50120 1.33954 1.09007 1.19574 1.19117 1.08714 0.88376 0.90103 1.25431 1.00402 1.00024 1.00678 1.69820 1.32524 1.26337 1.33606 0.85380 0.77252 0.77452 0.80781 1.20217 1.23212 1.20137 0.94783 0.91049 0.92290 0.93312 0.89915 0.81005 0.75817 0.90096 0.94966 0.89676 0.89359 0.90180 0.88355 0.90395 0.88893 0.89452 0.90951 0.79516 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 8.75 71.98 0.63 -3.21 16 2 C -0.10 -3.02 3.41 -9.61 -0.03 -3.05 16 3 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 4 C 0.11 3.71 6.46 86.73 0.56 4.27 16 5 N -0.58 -21.37 3.33 -814.06 -2.71 -24.08 16 6 C 0.57 21.93 7.86 86.97 0.68 22.61 16 7 O -0.57 -23.48 16.75 -3.63 -0.06 -23.54 16 8 C 0.14 4.74 6.75 42.00 0.28 5.03 16 9 C -0.20 -5.29 9.71 22.71 0.22 -5.07 16 10 C 0.18 3.92 11.30 84.78 0.96 4.88 16 11 N -0.54 -14.28 8.12 -198.01 -1.61 -15.89 16 12 C 0.47 14.58 6.98 261.53 1.83 16.41 16 13 N -0.45 -12.70 5.35 -696.36 -3.73 -16.43 16 14 C 0.05 1.59 6.31 86.65 0.55 2.14 16 15 C -0.12 -2.52 7.06 31.80 0.22 -2.29 16 16 C -0.12 -2.06 6.93 31.47 0.22 -1.84 16 17 C 0.04 0.82 6.33 86.45 0.55 1.36 16 18 N -0.50 -17.58 6.57 -187.10 -1.23 -18.81 16 19 C 0.09 3.09 5.66 86.93 0.49 3.58 16 20 C 0.16 5.80 3.49 46.46 0.16 5.96 16 21 H 0.09 2.96 8.09 -2.39 -0.02 2.94 16 22 N -0.72 -34.05 4.58 -316.02 -1.45 -35.50 16 23 C -0.23 -11.81 9.96 84.03 0.84 -10.97 16 24 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 25 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 26 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 27 Si 0.96 44.90 29.55 68.60 2.03 46.93 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 29 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 30 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 31 H 0.03 1.31 6.43 -2.39 -0.02 1.29 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.05 1.82 7.80 -2.39 -0.02 1.80 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.17 3.98 7.73 -2.91 -0.02 3.96 16 37 H 0.23 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 39 H 0.03 1.06 7.99 -2.38 -0.02 1.04 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.74 6.46 -2.38 -0.02 1.73 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.09 3.63 5.92 -2.39 -0.01 3.61 16 47 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 48 H 0.37 19.76 6.35 -92.71 -0.59 19.17 16 49 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.50 391.61 0.53 -69.98 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.38 Total: 39.92 kcal Atomic # 6 Polarization: 27.54 SS G_CDS: 8.62 Total: 36.17 kcal Atomic # 7 Polarization: -159.01 SS G_CDS: -10.44 Total: -169.45 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.06 Total: -23.54 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.50 0.53 -69.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054819352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.549 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds