Wall clock time and date at job start Wed Apr 1 2020 04:00:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 110.91926 * 2 1
4 4 C 1.54908 * 110.99990 * 236.09980 * 2 1 3
5 5 N 1.47427 * 104.83137 * 204.91476 * 4 2 1
6 6 C 1.36939 * 125.64717 * 204.16352 * 5 4 2
7 7 H 1.07994 * 120.00291 * 359.97438 * 6 5 4
8 8 C 1.38817 * 119.99715 * 179.97438 * 6 5 4
9 9 N 1.31619 * 120.00174 * 359.97438 * 8 6 5
10 10 Si 1.86800 * 120.00097 * 180.02562 * 8 6 5
11 11 H 1.48500 * 109.46897 * 0.02562 * 10 8 6
12 12 H 1.48503 * 109.47105 * 119.99758 * 10 8 6
13 13 H 1.48498 * 109.47239 * 240.00291 * 10 8 6
14 14 C 1.47019 * 108.70334 * 24.13070 * 5 4 2
15 15 C 1.54331 * 107.27070 * 358.93938 * 14 5 4
16 16 H 1.08997 * 110.71916 * 96.34529 * 15 14 5
17 17 N 1.46500 * 110.72051 * 219.44269 * 15 14 5
18 18 C 1.34772 * 120.00099 * 273.54768 * 17 15 14
19 19 O 1.21282 * 120.00008 * 359.97438 * 18 17 15
20 20 C 1.50697 * 119.99978 * 179.97438 * 18 17 15
21 21 H 1.08997 * 110.42368 * 320.85859 * 20 18 17
22 22 C 1.54910 * 110.37394 * 83.17201 * 20 18 17
23 23 C 1.55132 * 101.65536 * 155.89673 * 22 20 18
24 24 C 1.54319 * 103.02328 * 324.34817 * 23 22 20
25 25 N 1.47446 * 107.23045 * 22.27917 * 24 23 22
26 26 C 1.38405 * 110.99967 * 123.25812 * 25 24 23
27 27 N 1.32494 * 119.22088 * 239.60785 * 26 25 24
28 28 C 1.32272 * 120.74414 * 179.75955 * 27 26 25
29 29 C 1.38606 * 119.19379 * 0.50690 * 28 27 26
30 30 C 1.38603 * 118.56259 * 359.74450 * 29 28 27
31 31 N 1.32283 * 119.19111 * 0.02562 * 30 29 28
32 32 H 1.09007 * 109.46794 * 296.09882 * 1 2 3
33 33 H 1.09002 * 109.47464 * 56.09226 * 1 2 3
34 34 H 1.08997 * 109.47343 * 176.09948 * 1 2 3
35 35 H 1.08999 * 110.36984 * 86.08110 * 4 2 1
36 36 H 1.08997 * 110.37053 * 323.75383 * 4 2 1
37 37 H 0.96996 * 120.00206 * 179.97438 * 9 8 6
38 38 H 1.09001 * 109.88409 * 239.52327 * 14 5 4
39 39 H 1.09000 * 109.88241 * 118.35484 * 14 5 4
40 40 H 0.97005 * 119.99707 * 93.54334 * 17 15 14
41 41 H 1.09008 * 110.98693 * 37.80562 * 22 20 18
42 42 H 1.08993 * 110.99108 * 273.99489 * 22 20 18
43 43 H 1.09002 * 110.71058 * 205.96161 * 23 22 20
44 44 H 1.08998 * 110.85416 * 82.80023 * 23 22 20
45 45 H 1.08995 * 109.88733 * 262.87849 * 24 23 22
46 46 H 1.09003 * 110.02762 * 141.76119 * 24 23 22
47 47 H 1.07997 * 120.40668 * 180.22914 * 28 27 26
48 48 H 1.08001 * 120.71716 * 179.73266 * 29 28 27
49 49 H 1.08000 * 120.40445 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9191 1.0181 0.0000
4 6 2.0851 -0.8066 -1.2004
5 7 3.4270 -1.2431 -0.7735
6 6 4.4643 -1.5654 -1.6074
7 1 4.3337 -1.5100 -2.6780
8 6 5.6837 -1.9633 -1.0766
9 7 5.8430 -2.0303 0.2282
10 14 7.0989 -2.4023 -2.2141
11 1 6.6663 -2.2446 -3.6259
12 1 8.2479 -1.5008 -1.9453
13 1 7.5075 -3.8099 -1.9754
14 6 3.4674 -1.2742 0.6958
15 6 2.0861 -0.8080 1.2022
16 1 1.4478 -1.6632 1.4238
17 7 2.2287 0.0494 2.3815
18 6 2.3023 -0.5007 3.6096
19 8 2.2500 -1.7055 3.7386
20 6 2.4495 0.3813 4.8227
21 1 3.1231 1.2114 4.6099
22 6 1.0661 0.9117 5.2749
23 6 1.3214 1.2138 6.7750
24 6 2.2887 0.0878 7.1968
25 7 2.9471 -0.4037 5.9725
26 6 4.3240 -0.3102 6.0780
27 7 4.9911 0.4283 5.2034
28 6 6.3067 0.5425 5.2790
29 6 6.9872 -0.1302 6.2817
30 6 6.2590 -0.8981 7.1768
31 7 4.9442 -0.9660 7.0479
32 1 -0.3633 0.4521 0.9230
33 1 -0.3634 0.5733 -0.8529
34 1 -0.3634 -1.0252 -0.0699
35 1 2.1559 -0.1720 -2.0837
36 1 1.4517 -1.6703 -1.4025
37 1 6.6949 -2.3087 0.5991
38 1 4.2426 -0.5998 1.0598
39 1 3.6650 -2.2895 1.0398
40 1 2.2701 1.0131 2.2783
41 1 0.2972 0.1482 5.1557
42 1 0.7999 1.8194 4.7336
43 1 0.3928 1.1571 7.3431
44 1 1.7889 2.1904 6.9000
45 1 1.7321 -0.7216 7.6690
46 1 3.0356 0.4771 7.8887
47 1 6.8446 1.1489 4.5653
48 1 8.0617 -0.0578 6.3637
49 1 6.7590 -1.4350 7.9693
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001079888854.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:00:19
Heat of formation + Delta-G solvation = 71.468558 kcal
Electronic energy + Delta-G solvation = -31472.713674 eV
Core-core repulsion = 27436.570233 eV
Total energy + Delta-G solvation = -4036.143441 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.39599 -39.69949 -38.37827 -37.02804 -33.79002 -33.72027 -33.12806 -32.49978
-30.32547 -29.85907 -29.83149 -27.47622 -25.58284 -24.57408 -24.28312 -23.58721
-22.19252 -21.32261 -20.38013 -19.87021 -19.35740 -18.01067 -17.41523 -17.05993
-16.80657 -15.93567 -15.64242 -15.26137 -14.97592 -14.77919 -14.51679 -14.17856
-13.93786 -13.69846 -13.49107 -13.35246 -13.18361 -13.00548 -12.72572 -12.57159
-12.35131 -11.99109 -11.65677 -11.63338 -11.57673 -11.28250 -11.20882 -10.97414
-10.85089 -10.76845 -10.75439 -10.50763 -10.30171 -10.18702 -9.91252 -9.85869
-9.65666 -9.24299 -9.17036 -8.56751 -8.36352 -8.32868 -6.77415 -5.63338
-2.98965 0.97057 1.15334 2.86844 3.19089 3.42416 3.47549 3.50484
3.73331 3.75628 4.04218 4.36079 4.48510 4.54336 4.64200 4.67800
4.84014 5.04153 5.08983 5.13443 5.16062 5.21262 5.36158 5.37515
5.44861 5.49972 5.51462 5.60012 5.60444 5.73397 5.75947 5.82444
5.95002 6.03908 6.05237 6.18403 6.20589 6.26270 6.38126 6.42897
6.56249 6.67819 6.73762 6.89096 7.03359 7.23129 7.64079 7.69419
7.93436 8.06061 8.16338 8.31809 8.79537 9.26954 9.88085 10.53421
11.46595
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.009739 B = 0.004052 C = 0.003003
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2874.392064 B = 6908.068727 C = 9322.908946
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.113 4.113
3 H 0.077 0.923
4 C 0.141 3.859
5 N -0.606 5.606
6 C -0.230 4.230
7 H 0.079 0.921
8 C -0.008 4.008
9 N -0.916 5.916
10 Si 0.910 3.090
11 H -0.280 1.280
12 H -0.291 1.291
13 H -0.291 1.291
14 C 0.176 3.824
15 C 0.124 3.876
16 H 0.084 0.916
17 N -0.712 5.712
18 C 0.526 3.474
19 O -0.519 6.519
20 C 0.058 3.942
21 H 0.113 0.887
22 C -0.118 4.118
23 C -0.140 4.140
24 C 0.063 3.937
25 N -0.430 5.430
26 C 0.494 3.506
27 N -0.548 5.548
28 C 0.181 3.819
29 C -0.263 4.263
30 C 0.171 3.829
31 N -0.529 5.529
32 H 0.050 0.950
33 H 0.052 0.948
34 H 0.054 0.946
35 H 0.041 0.959
36 H 0.021 0.979
37 H 0.250 0.750
38 H 0.050 0.950
39 H 0.045 0.955
40 H 0.393 0.607
41 H 0.085 0.915
42 H 0.089 0.911
43 H 0.086 0.914
44 H 0.073 0.927
45 H 0.094 0.906
46 H 0.066 0.934
47 H 0.169 0.831
48 H 0.146 0.854
49 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.617 11.741 15.150 20.277
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.133 4.133
3 H 0.095 0.905
4 C 0.014 3.986
5 N -0.333 5.333
6 C -0.358 4.358
7 H 0.097 0.903
8 C -0.204 4.204
9 N -0.563 5.563
10 Si 0.740 3.260
11 H -0.205 1.205
12 H -0.219 1.219
13 H -0.218 1.218
14 C 0.050 3.950
15 C 0.019 3.981
16 H 0.102 0.898
17 N -0.363 5.363
18 C 0.310 3.690
19 O -0.393 6.393
20 C -0.053 4.053
21 H 0.130 0.870
22 C -0.156 4.156
23 C -0.178 4.178
24 C -0.063 4.063
25 N -0.150 5.150
26 C 0.138 3.862
27 N -0.268 5.268
28 C 0.014 3.986
29 C -0.286 4.286
30 C 0.003 3.997
31 N -0.247 5.247
32 H 0.069 0.931
33 H 0.071 0.929
34 H 0.074 0.926
35 H 0.059 0.941
36 H 0.039 0.961
37 H 0.061 0.939
38 H 0.068 0.932
39 H 0.063 0.937
40 H 0.227 0.773
41 H 0.104 0.896
42 H 0.108 0.892
43 H 0.105 0.895
44 H 0.092 0.908
45 H 0.112 0.888
46 H 0.084 0.916
47 H 0.186 0.814
48 H 0.164 0.836
49 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -7.622 10.146 15.117 19.737
hybrid contribution 2.275 0.705 -0.570 2.449
sum -5.347 10.851 14.547 18.920
Atomic orbital electron populations
1.21695 0.95087 1.01749 1.00902 1.22603 0.94755 0.99497 0.96456
0.90471 1.21583 0.87689 0.94981 0.94310 1.44434 1.07805 1.79179
1.01893 1.19090 0.89293 1.38487 0.88929 0.90325 1.24827 0.97853
1.01796 0.95932 1.70016 1.23912 1.53239 1.09140 0.86078 0.82504
0.77759 0.79632 1.20485 1.21851 1.21795 1.21443 0.90227 1.00264
0.83078 1.22427 1.00117 0.92642 0.82903 0.89792 1.45825 1.74804
1.09901 1.05740 1.19924 0.76666 0.88731 0.83669 1.90715 1.48048
1.14664 1.85877 1.22622 0.97608 0.95486 0.89568 0.86983 1.22710
0.95396 1.01902 0.95619 1.22834 1.00207 0.98483 0.96294 1.22808
0.96758 0.97400 0.89303 1.59449 0.99460 1.51463 1.04584 1.21029
0.91542 0.87036 0.86618 1.68206 1.10485 1.20042 1.28036 1.23080
0.89046 0.92757 0.93686 1.22722 1.02871 1.03673 0.99377 1.23062
0.88629 0.92018 0.95960 1.67987 1.11240 1.21474 1.24001 0.93092
0.92852 0.92640 0.94061 0.96126 0.93946 0.93179 0.93729 0.77338
0.89624 0.89248 0.89490 0.90809 0.88820 0.91560 0.81399 0.83618
0.81465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.83 9.31 37.16 0.35 -1.49 16
2 C -0.11 -1.93 3.25 -88.47 -0.29 -2.22 16
3 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16
4 C 0.14 2.94 6.70 -2.53 -0.02 2.93 16
5 N -0.61 -16.03 3.39 -170.07 -0.58 -16.60 16
6 C -0.23 -6.59 10.28 -15.06 -0.15 -6.75 16
7 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16
8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16
9 N -0.92 -28.27 10.31 55.49 0.57 -27.70 16
10 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16
11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
14 C 0.18 4.57 5.12 -3.06 -0.02 4.56 16
15 C 0.12 2.49 2.70 -66.09 -0.18 2.31 16
16 H 0.08 1.81 7.59 -51.93 -0.39 1.41 16
17 N -0.71 -12.14 5.13 -52.03 -0.27 -12.41 16
18 C 0.53 9.72 7.11 -10.99 -0.08 9.64 16
19 O -0.52 -12.19 16.32 5.56 0.09 -12.10 16
20 C 0.06 0.84 2.46 -67.34 -0.17 0.67 16
21 H 0.11 1.56 6.53 -51.93 -0.34 1.22 16
22 C -0.12 -1.18 6.48 -24.60 -0.16 -1.34 16
23 C -0.14 -1.16 6.94 -24.91 -0.17 -1.33 16
24 C 0.06 0.72 6.65 -2.83 -0.02 0.70 16
25 N -0.43 -6.75 4.49 -166.01 -0.75 -7.49 16
26 C 0.49 8.15 6.86 -322.81 -2.22 5.93 16
27 N -0.55 -8.83 8.17 -13.93 -0.11 -8.95 16
28 C 0.18 2.42 11.30 -17.23 -0.19 2.22 16
29 C -0.26 -2.94 10.16 -39.31 -0.40 -3.34 16
30 C 0.17 2.05 11.30 -17.22 -0.19 1.86 16
31 N -0.53 -8.18 9.95 -13.93 -0.14 -8.32 16
32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16
35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
36 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16
37 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16
38 H 0.05 1.44 7.27 -51.93 -0.38 1.06 16
39 H 0.04 1.37 7.51 -51.93 -0.39 0.98 16
40 H 0.39 5.46 8.52 -40.82 -0.35 5.11 16
41 H 0.09 0.93 8.05 -51.92 -0.42 0.51 16
42 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16
43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
46 H 0.07 0.73 7.38 -51.93 -0.38 0.35 16
47 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16
48 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16
49 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16
LS Contribution 394.97 15.07 5.95 5.95
Total: -1.00 -38.36 394.97 -11.93 -50.28
By element:
Atomic # 1 Polarization: 13.27 SS G_CDS: -7.67 Total: 5.60 kcal
Atomic # 6 Polarization: 18.04 SS G_CDS: -4.00 Total: 14.04 kcal
Atomic # 7 Polarization: -80.20 SS G_CDS: -1.27 Total: -81.47 kcal
Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal
Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -38.36 -11.93 -50.28 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079888854.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.752 kcal
(2) G-P(sol) polarization free energy of solvation -38.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds