Wall clock time and date at job start Wed Apr 1 2020 04:00:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 110.91926 * 2 1
4 4 C 1.54908 * 110.99990 * 236.09980 * 2 1 3
5 5 N 1.47427 * 104.83137 * 204.91476 * 4 2 1
6 6 C 1.36939 * 125.64717 * 204.16352 * 5 4 2
7 7 H 1.07994 * 120.00291 * 359.97438 * 6 5 4
8 8 C 1.38817 * 119.99715 * 179.97438 * 6 5 4
9 9 N 1.31619 * 120.00174 * 359.97438 * 8 6 5
10 10 Si 1.86800 * 120.00097 * 180.02562 * 8 6 5
11 11 H 1.48500 * 109.46897 * 0.02562 * 10 8 6
12 12 H 1.48503 * 109.47105 * 119.99758 * 10 8 6
13 13 H 1.48498 * 109.47239 * 240.00291 * 10 8 6
14 14 C 1.47019 * 108.70334 * 24.13070 * 5 4 2
15 15 C 1.54331 * 107.27070 * 358.93938 * 14 5 4
16 16 H 1.08997 * 110.71916 * 96.34529 * 15 14 5
17 17 N 1.46500 * 110.72051 * 219.44269 * 15 14 5
18 18 C 1.34772 * 120.00099 * 273.54768 * 17 15 14
19 19 O 1.21282 * 120.00008 * 359.97438 * 18 17 15
20 20 C 1.50697 * 119.99978 * 179.97438 * 18 17 15
21 21 H 1.08997 * 110.42368 * 320.85859 * 20 18 17
22 22 C 1.54910 * 110.37394 * 83.17201 * 20 18 17
23 23 C 1.55132 * 101.65536 * 155.89673 * 22 20 18
24 24 C 1.54319 * 103.02328 * 324.34817 * 23 22 20
25 25 N 1.47446 * 107.23045 * 22.27917 * 24 23 22
26 26 C 1.38405 * 110.99967 * 123.25812 * 25 24 23
27 27 N 1.32494 * 119.22088 * 239.60785 * 26 25 24
28 28 C 1.32272 * 120.74414 * 179.75955 * 27 26 25
29 29 C 1.38606 * 119.19379 * 0.50690 * 28 27 26
30 30 C 1.38603 * 118.56259 * 359.74450 * 29 28 27
31 31 N 1.32283 * 119.19111 * 0.02562 * 30 29 28
32 32 H 1.09007 * 109.46794 * 296.09882 * 1 2 3
33 33 H 1.09002 * 109.47464 * 56.09226 * 1 2 3
34 34 H 1.08997 * 109.47343 * 176.09948 * 1 2 3
35 35 H 1.08999 * 110.36984 * 86.08110 * 4 2 1
36 36 H 1.08997 * 110.37053 * 323.75383 * 4 2 1
37 37 H 0.96996 * 120.00206 * 179.97438 * 9 8 6
38 38 H 1.09001 * 109.88409 * 239.52327 * 14 5 4
39 39 H 1.09000 * 109.88241 * 118.35484 * 14 5 4
40 40 H 0.97005 * 119.99707 * 93.54334 * 17 15 14
41 41 H 1.09008 * 110.98693 * 37.80562 * 22 20 18
42 42 H 1.08993 * 110.99108 * 273.99489 * 22 20 18
43 43 H 1.09002 * 110.71058 * 205.96161 * 23 22 20
44 44 H 1.08998 * 110.85416 * 82.80023 * 23 22 20
45 45 H 1.08995 * 109.88733 * 262.87849 * 24 23 22
46 46 H 1.09003 * 110.02762 * 141.76119 * 24 23 22
47 47 H 1.07997 * 120.40668 * 180.22914 * 28 27 26
48 48 H 1.08001 * 120.71716 * 179.73266 * 29 28 27
49 49 H 1.08000 * 120.40445 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9191 1.0181 0.0000
4 6 2.0851 -0.8066 -1.2004
5 7 3.4270 -1.2431 -0.7735
6 6 4.4643 -1.5654 -1.6074
7 1 4.3337 -1.5100 -2.6780
8 6 5.6837 -1.9633 -1.0766
9 7 5.8430 -2.0303 0.2282
10 14 7.0989 -2.4023 -2.2141
11 1 6.6663 -2.2446 -3.6259
12 1 8.2479 -1.5008 -1.9453
13 1 7.5075 -3.8099 -1.9754
14 6 3.4674 -1.2742 0.6958
15 6 2.0861 -0.8080 1.2022
16 1 1.4478 -1.6632 1.4238
17 7 2.2287 0.0494 2.3815
18 6 2.3023 -0.5007 3.6096
19 8 2.2500 -1.7055 3.7386
20 6 2.4495 0.3813 4.8227
21 1 3.1231 1.2114 4.6099
22 6 1.0661 0.9117 5.2749
23 6 1.3214 1.2138 6.7750
24 6 2.2887 0.0878 7.1968
25 7 2.9471 -0.4037 5.9725
26 6 4.3240 -0.3102 6.0780
27 7 4.9911 0.4283 5.2034
28 6 6.3067 0.5425 5.2790
29 6 6.9872 -0.1302 6.2817
30 6 6.2590 -0.8981 7.1768
31 7 4.9442 -0.9660 7.0479
32 1 -0.3633 0.4521 0.9230
33 1 -0.3634 0.5733 -0.8529
34 1 -0.3634 -1.0252 -0.0699
35 1 2.1559 -0.1720 -2.0837
36 1 1.4517 -1.6703 -1.4025
37 1 6.6949 -2.3087 0.5991
38 1 4.2426 -0.5998 1.0598
39 1 3.6650 -2.2895 1.0398
40 1 2.2701 1.0131 2.2783
41 1 0.2972 0.1482 5.1557
42 1 0.7999 1.8194 4.7336
43 1 0.3928 1.1571 7.3431
44 1 1.7889 2.1904 6.9000
45 1 1.7321 -0.7216 7.6690
46 1 3.0356 0.4771 7.8887
47 1 6.8446 1.1489 4.5653
48 1 8.0617 -0.0578 6.3637
49 1 6.7590 -1.4350 7.9693
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001079888854.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:00:18
Heat of formation + Delta-G solvation = 44.070700 kcal
Electronic energy + Delta-G solvation = -31473.901734 eV
Core-core repulsion = 27436.570233 eV
Total energy + Delta-G solvation = -4037.331501 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.44632 -41.04827 -39.73243 -38.57774 -35.62027 -34.77994 -34.34273 -33.94021
-32.19295 -31.00651 -30.78057 -29.20533 -27.37206 -25.64535 -25.54413 -24.97672
-23.52115 -22.13899 -22.02829 -21.54625 -20.77220 -19.06716 -18.90295 -18.58974
-18.15682 -17.32810 -16.97353 -16.71347 -16.44573 -15.92471 -15.67020 -15.54661
-15.48603 -15.14667 -14.74229 -14.61795 -14.45049 -14.27874 -14.07695 -13.90247
-13.73706 -13.34122 -13.21500 -13.05159 -12.92049 -12.74894 -12.61872 -12.34396
-12.15818 -12.08141 -12.02872 -11.89873 -11.87969 -11.68605 -11.64107 -11.46629
-11.17755 -10.79753 -10.69897 -10.22804 -9.98157 -9.41123 -8.95843 -7.86576
-5.25678 -0.03348 0.14921 1.40665 1.43309 1.53725 1.58441 1.93533
2.41320 2.49543 2.73261 3.07677 3.31325 3.44791 3.51523 3.64766
3.72612 3.77165 3.82232 3.96037 4.04075 4.05577 4.10742 4.15470
4.28218 4.36623 4.43462 4.49670 4.60741 4.63045 4.73399 4.77634
4.82605 4.87836 4.88451 5.00971 5.07955 5.08034 5.20048 5.24074
5.27835 5.30059 5.41741 5.45736 5.50481 5.61272 5.70698 5.78654
6.13146 6.21936 6.64658 7.02949 7.10532 7.36714 7.73139 8.37310
9.22183
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.009739 B = 0.004052 C = 0.003003
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2874.392064 B = 6908.068727 C = 9322.908946
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.091 4.091
3 H 0.094 0.906
4 C 0.131 3.869
5 N -0.628 5.628
6 C -0.242 4.242
7 H 0.091 0.909
8 C -0.071 4.071
9 N -0.953 5.953
10 Si 0.981 3.019
11 H -0.258 1.258
12 H -0.289 1.289
13 H -0.298 1.298
14 C 0.195 3.805
15 C 0.139 3.861
16 H 0.066 0.934
17 N -0.698 5.698
18 C 0.522 3.478
19 O -0.579 6.579
20 C 0.064 3.936
21 H 0.116 0.884
22 C -0.110 4.110
23 C -0.124 4.124
24 C 0.059 3.941
25 N -0.460 5.460
26 C 0.471 3.529
27 N -0.576 5.576
28 C 0.156 3.844
29 C -0.250 4.250
30 C 0.162 3.838
31 N -0.555 5.555
32 H 0.072 0.928
33 H 0.080 0.920
34 H 0.048 0.952
35 H 0.058 0.942
36 H 0.024 0.976
37 H 0.241 0.759
38 H 0.013 0.987
39 H -0.022 1.022
40 H 0.412 0.588
41 H 0.076 0.924
42 H 0.123 0.877
43 H 0.114 0.886
44 H 0.090 0.910
45 H 0.091 0.909
46 H 0.065 0.935
47 H 0.186 0.814
48 H 0.184 0.816
49 H 0.206 0.794
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.670 14.367 14.989 22.133
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.111 4.111
3 H 0.112 0.888
4 C 0.006 3.994
5 N -0.354 5.354
6 C -0.371 4.371
7 H 0.108 0.892
8 C -0.264 4.264
9 N -0.602 5.602
10 Si 0.809 3.191
11 H -0.182 1.182
12 H -0.216 1.216
13 H -0.225 1.225
14 C 0.068 3.932
15 C 0.032 3.968
16 H 0.085 0.915
17 N -0.349 5.349
18 C 0.308 3.692
19 O -0.457 6.457
20 C -0.047 4.047
21 H 0.134 0.866
22 C -0.148 4.148
23 C -0.162 4.162
24 C -0.066 4.066
25 N -0.180 5.180
26 C 0.114 3.886
27 N -0.296 5.296
28 C -0.009 4.009
29 C -0.273 4.273
30 C -0.005 4.005
31 N -0.274 5.274
32 H 0.091 0.909
33 H 0.099 0.901
34 H 0.067 0.933
35 H 0.076 0.924
36 H 0.042 0.958
37 H 0.050 0.950
38 H 0.032 0.968
39 H -0.004 1.004
40 H 0.249 0.751
41 H 0.095 0.905
42 H 0.141 0.859
43 H 0.132 0.868
44 H 0.108 0.892
45 H 0.109 0.891
46 H 0.084 0.916
47 H 0.203 0.797
48 H 0.202 0.798
49 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges -8.711 12.842 14.931 21.534
hybrid contribution 2.674 -0.198 -0.531 2.733
sum -6.038 12.644 14.399 20.091
Atomic orbital electron populations
1.21655 0.91382 1.02204 1.03312 1.22534 0.97511 0.98847 0.92167
0.88751 1.21885 0.85115 0.95802 0.96579 1.44760 1.09602 1.79199
1.01877 1.19592 0.90065 1.37518 0.89884 0.89155 1.25769 1.00826
1.02378 0.97380 1.70307 1.23902 1.54703 1.11304 0.84973 0.78870
0.76682 0.78613 1.18212 1.21588 1.22515 1.21009 0.92872 0.95770
0.83510 1.21997 0.96111 0.93538 0.85107 0.91546 1.45650 1.74018
1.10555 1.04704 1.20836 0.74797 0.88526 0.84999 1.90682 1.50745
1.17498 1.86805 1.22625 1.00377 0.94072 0.87589 0.86620 1.22795
0.92170 1.02738 0.97122 1.22828 1.00586 0.97807 0.94973 1.22938
0.97147 0.98496 0.87987 1.59484 0.99692 1.52557 1.06232 1.21272
0.92093 0.87892 0.87312 1.68169 1.11878 1.21041 1.28536 1.23596
0.88720 0.93675 0.94951 1.23109 1.04589 1.01837 0.97750 1.23802
0.87826 0.91944 0.96915 1.68019 1.12977 1.22033 1.24376 0.90918
0.90126 0.93297 0.92363 0.95837 0.94954 0.96845 1.00390 0.75082
0.90503 0.85882 0.86750 0.89159 0.89104 0.91640 0.79699 0.79836
0.77774
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.99 9.31 71.98 0.67 -2.32 16
2 C -0.09 -2.94 3.25 -9.40 -0.03 -2.97 16
3 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16
4 C 0.13 5.37 6.70 86.85 0.58 5.95 16
5 N -0.63 -34.11 3.39 -691.98 -2.35 -36.46 16
6 C -0.24 -14.14 10.28 84.03 0.86 -13.28 16
7 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16
8 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16
9 N -0.95 -62.19 10.31 21.65 0.22 -61.96 16
10 Si 0.98 47.79 29.55 68.60 2.03 49.82 16
11 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16
12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16
13 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16
14 C 0.20 10.79 5.12 86.73 0.44 11.24 16
15 C 0.14 5.71 2.70 46.18 0.12 5.83 16
16 H 0.07 2.99 7.59 -2.39 -0.02 2.97 16
17 N -0.70 -24.10 5.13 -436.92 -2.24 -26.34 16
18 C 0.52 20.02 7.11 87.66 0.62 20.64 16
19 O -0.58 -29.05 16.32 -3.04 -0.05 -29.10 16
20 C 0.06 1.85 2.46 44.64 0.11 1.96 16
21 H 0.12 3.23 6.53 -2.39 -0.02 3.21 16
22 C -0.11 -1.97 6.48 31.98 0.21 -1.76 16
23 C -0.12 -1.74 6.94 31.77 0.22 -1.52 16
24 C 0.06 1.33 6.65 86.65 0.58 1.90 16
25 N -0.46 -14.86 4.49 -679.15 -3.05 -17.91 16
26 C 0.47 16.12 6.86 261.49 1.79 17.91 16
27 N -0.58 -19.26 8.17 -197.99 -1.62 -20.87 16
28 C 0.16 4.24 11.30 84.71 0.96 5.20 16
29 C -0.25 -5.37 10.16 22.44 0.23 -5.14 16
30 C 0.16 3.80 11.30 84.71 0.96 4.76 16
31 N -0.56 -17.61 9.95 -197.99 -1.97 -19.58 16
32 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16
33 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16
34 H 0.05 1.23 8.07 -2.39 -0.02 1.21 16
35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
36 H 0.02 0.97 7.98 -2.39 -0.02 0.95 16
37 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16
38 H 0.01 0.82 7.27 -2.39 -0.02 0.81 16
39 H -0.02 -1.50 7.51 -2.39 -0.02 -1.52 16
40 H 0.41 10.99 8.52 -92.70 -0.79 10.20 16
41 H 0.08 1.54 8.05 -2.38 -0.02 1.53 16
42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16
43 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16
44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
45 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16
46 H 0.07 1.44 7.38 -2.39 -0.02 1.42 16
47 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16
48 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16
49 H 0.21 2.97 8.06 -2.91 -0.02 2.95 16
Total: -1.00 -92.91 394.97 -0.07 -92.97
By element:
Atomic # 1 Polarization: 24.68 SS G_CDS: 0.17 Total: 24.85 kcal
Atomic # 6 Polarization: 35.80 SS G_CDS: 8.79 Total: 44.59 kcal
Atomic # 7 Polarization: -172.12 SS G_CDS: -11.01 Total: -183.12 kcal
Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.10 kcal
Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal
Total: -92.91 -0.07 -92.97 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079888854.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.042 kcal
(2) G-P(sol) polarization free energy of solvation -92.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.137 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.071 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds