Wall clock time and date at job start Wed Apr 1 2020 04:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.91562 * 2 1 4 4 C 1.54908 * 111.00443 * 236.09724 * 2 1 3 5 5 N 1.47426 * 104.83065 * 204.91328 * 4 2 1 6 6 C 1.36939 * 125.64820 * 204.16274 * 5 4 2 7 7 H 1.07998 * 119.99944 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00219 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00124 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46794 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47350 * 119.99879 * 10 8 6 13 13 H 1.48499 * 109.47095 * 240.00025 * 10 8 6 14 14 C 1.47020 * 108.70536 * 24.12856 * 5 4 2 15 15 C 1.54323 * 107.27062 * 358.94088 * 14 5 4 16 16 H 1.08996 * 110.72316 * 96.16702 * 15 14 5 17 17 N 1.46507 * 110.72058 * 219.26743 * 15 14 5 18 18 C 1.34778 * 119.99819 * 271.15332 * 17 15 14 19 19 O 1.21282 * 119.99814 * 0.02562 * 18 17 15 20 20 C 1.50693 * 119.99784 * 179.97438 * 18 17 15 21 21 H 1.09004 * 109.50834 * 59.92543 * 20 18 17 22 22 C 1.53122 * 109.50543 * 299.80497 * 20 18 17 23 23 C 1.53121 * 109.15909 * 182.40750 * 22 20 18 24 24 C 1.53038 * 109.28072 * 57.65541 * 23 22 20 25 25 N 1.46845 * 109.52247 * 300.81907 * 24 23 22 26 26 C 1.46895 * 111.00049 * 185.83807 * 25 24 23 27 27 C 1.52996 * 109.47081 * 312.71203 * 26 25 24 28 28 F 1.39895 * 109.46992 * 306.12218 * 27 26 25 29 29 F 1.39897 * 109.47429 * 66.12682 * 27 26 25 30 30 C 1.46845 * 111.19797 * 61.74032 * 25 24 23 31 31 H 1.08998 * 109.47095 * 296.09676 * 1 2 3 32 32 H 1.08991 * 109.47722 * 56.10121 * 1 2 3 33 33 H 1.09006 * 109.47030 * 176.10598 * 1 2 3 34 34 H 1.08992 * 110.36572 * 86.07771 * 4 2 1 35 35 H 1.08994 * 110.45965 * 323.79791 * 4 2 1 36 36 H 0.96998 * 120.00010 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.88766 * 239.52475 * 14 5 4 38 38 H 1.09003 * 110.01577 * 118.42692 * 14 5 4 39 39 H 0.96994 * 119.99721 * 91.15853 * 17 15 14 40 40 H 1.09005 * 109.51990 * 302.31196 * 22 20 18 41 41 H 1.09003 * 109.52311 * 62.49804 * 22 20 18 42 42 H 1.09001 * 109.50482 * 297.70766 * 23 22 20 43 43 H 1.09004 * 109.53131 * 177.61529 * 23 22 20 44 44 H 1.08997 * 109.45668 * 180.80400 * 24 23 22 45 45 H 1.08999 * 109.46004 * 60.83644 * 24 23 22 46 46 H 1.09004 * 109.46788 * 72.71098 * 26 25 24 47 47 H 1.08996 * 109.47515 * 192.70490 * 26 25 24 48 48 H 1.09005 * 109.46693 * 186.12829 * 27 26 25 49 49 H 1.08999 * 109.46312 * 178.24226 * 30 25 24 50 50 H 1.08999 * 109.46137 * 58.27642 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7733 6 6 4.4645 -1.5653 -1.6071 7 1 4.3339 -1.5100 -2.6778 8 6 5.6838 -1.9631 -1.0763 9 7 5.8428 -2.0309 0.2286 10 14 7.0991 -2.4021 -2.2137 11 1 6.6666 -2.2445 -3.6255 12 1 8.2481 -1.5005 -1.9449 13 1 7.5078 -3.8096 -1.9748 14 6 3.4675 -1.2740 0.6960 15 6 2.0862 -0.8079 1.2023 16 1 1.4468 -1.6631 1.4210 17 7 2.2284 0.0463 2.3840 18 6 2.2518 -0.5038 3.6142 19 8 2.1556 -1.7059 3.7428 20 6 2.3987 0.3747 4.8297 21 1 1.5685 1.0799 4.8717 22 6 3.7202 1.1439 4.7479 23 6 3.8897 1.9878 6.0143 24 6 3.8440 1.0735 7.2407 25 7 2.5605 0.3608 7.2740 26 6 2.4245 -0.4211 8.5101 27 6 3.7085 -1.2165 8.7543 28 9 4.0085 -1.9775 7.6194 29 9 4.7616 -0.3334 9.0155 30 6 2.3963 -0.4928 6.0905 31 1 -0.3633 0.4520 0.9229 32 1 -0.3634 0.5731 -0.8529 33 1 -0.3633 -1.0253 -0.0698 34 1 2.1559 -0.1720 -2.0836 35 1 1.4525 -1.6704 -1.4042 36 1 6.6948 -2.3093 0.5995 37 1 4.2426 -0.5995 1.0600 38 1 3.6663 -2.2882 1.0425 39 1 2.3057 1.0077 2.2811 40 1 4.5476 0.4389 4.6665 41 1 3.7087 1.7959 3.8745 42 1 3.0834 2.7188 6.0751 43 1 4.8484 2.5054 5.9817 44 1 3.9501 1.6731 8.1447 45 1 4.6590 0.3517 7.1860 46 1 2.2494 0.2527 9.3488 47 1 1.5839 -1.1084 8.4146 48 1 3.5687 -1.8784 9.6090 49 1 1.4509 -1.0309 6.1592 50 1 3.2180 -1.2073 6.0412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080342460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:27 Heat of formation + Delta-G solvation = -108.942828 kcal Electronic energy + Delta-G solvation = -32321.836225 eV Core-core repulsion = 27827.180372 eV Total energy + Delta-G solvation = -4494.655852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.36718 -47.24177 -40.06724 -38.52492 -37.29076 -34.25195 -33.74938 -32.51698 -31.07701 -30.34288 -29.25787 -27.68169 -25.61932 -24.57616 -24.22239 -23.12769 -22.42388 -20.76011 -20.11211 -19.91739 -19.26909 -17.91607 -17.61664 -16.93773 -16.85130 -16.47459 -15.95069 -15.36211 -15.01460 -14.95068 -14.55965 -14.30488 -14.16002 -13.81178 -13.71565 -13.55041 -13.44396 -13.11711 -12.97540 -12.77052 -12.75496 -12.56180 -12.37916 -12.08214 -11.90384 -11.83995 -11.65974 -11.30870 -11.25649 -10.99440 -10.92017 -10.77355 -10.70597 -10.58728 -10.45755 -10.33292 -9.93759 -9.88366 -9.67920 -9.28017 -8.59093 -8.45266 -8.38536 -6.79970 -5.65969 -3.01282 3.04131 3.28441 3.42342 3.47335 3.50404 3.54887 3.80678 4.04204 4.21976 4.43019 4.52965 4.64986 4.77178 4.88823 5.01469 5.08207 5.17516 5.25606 5.26666 5.34416 5.38622 5.47924 5.50134 5.57926 5.62775 5.71876 5.79085 5.82123 5.89764 5.97975 6.01901 6.03320 6.11819 6.18300 6.23920 6.30026 6.38662 6.53081 6.65598 6.73624 6.80080 6.84620 6.98478 7.61166 7.63231 7.89259 7.98910 8.29189 8.67310 9.25062 9.85799 10.50858 11.44556 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.003029 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.539834 B = 9242.576275 C =10585.160456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.174 3.826 15 C 0.120 3.880 16 H 0.086 0.914 17 N -0.711 5.711 18 C 0.518 3.482 19 O -0.539 6.539 20 C -0.099 4.099 21 H 0.099 0.901 22 C -0.114 4.114 23 C -0.114 4.114 24 C 0.040 3.960 25 N -0.531 5.531 26 C 0.011 3.989 27 C 0.221 3.779 28 F -0.195 7.195 29 F -0.203 7.203 30 C 0.057 3.943 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.021 0.979 36 H 0.251 0.749 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.395 0.605 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.081 0.919 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 8.891 17.796 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.048 3.952 15 C 0.015 3.985 16 H 0.104 0.896 17 N -0.361 5.361 18 C 0.303 3.697 19 O -0.416 6.416 20 C -0.121 4.121 21 H 0.117 0.883 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.087 4.087 25 N -0.254 5.254 26 C -0.119 4.119 27 C 0.165 3.835 28 F -0.177 7.177 29 F -0.184 7.184 30 C -0.071 4.071 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.228 0.772 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.899 8.293 17.850 22.031 hybrid contribution 1.652 -0.406 -0.629 1.814 sum -8.247 7.887 17.221 20.658 Atomic orbital electron populations 1.21692 0.95093 1.01747 1.00922 1.22605 0.94772 0.99482 0.96479 0.90521 1.21583 0.87670 0.95006 0.94326 1.44422 1.07819 1.79198 1.01855 1.19092 0.89274 1.38502 0.88944 0.90313 1.24824 0.97866 1.01746 0.95980 1.69991 1.24052 1.53301 1.09176 0.86063 0.82445 0.77781 0.79581 1.20504 1.21814 1.21752 1.21455 0.90129 1.00344 0.83233 1.22467 1.00195 0.92804 0.82987 0.89590 1.45902 1.74086 1.10341 1.05771 1.20381 0.76166 0.88768 0.84400 1.90706 1.49318 1.15129 1.86412 1.21255 1.00226 0.97765 0.92874 0.88280 1.21590 0.96345 0.98910 0.98399 1.21589 1.02243 0.97786 0.93529 1.22538 0.89786 0.97286 0.99111 1.62023 1.33994 1.28157 1.01218 1.23417 0.95283 0.97613 0.95596 1.22909 0.86487 0.86773 0.87313 1.92981 1.94255 1.76713 1.53715 1.92963 1.60865 1.70418 1.94202 1.22225 1.03599 0.93891 0.87372 0.93122 0.92835 0.92632 0.94055 0.96086 0.93814 0.93226 0.93554 0.77167 0.91088 0.90971 0.91084 0.90999 0.90353 0.92991 0.87532 0.87645 0.87395 0.90087 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.31 37.16 0.35 -1.49 16 2 C -0.11 -1.91 3.26 -88.47 -0.29 -2.20 16 3 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 4 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 5 N -0.61 -15.76 3.39 -170.08 -0.58 -16.34 16 6 C -0.23 -6.52 10.28 -15.06 -0.15 -6.68 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.91 10.31 55.49 0.57 -27.34 16 10 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 C 0.17 4.40 5.12 -3.07 -0.02 4.38 16 15 C 0.12 2.33 2.74 -66.09 -0.18 2.15 16 16 H 0.09 1.79 7.52 -51.93 -0.39 1.40 16 17 N -0.71 -11.51 5.03 -52.03 -0.26 -11.77 16 18 C 0.52 8.75 7.15 -10.99 -0.08 8.67 16 19 O -0.54 -11.43 15.67 5.56 0.09 -11.34 16 20 C -0.10 -1.28 2.69 -91.69 -0.25 -1.52 16 21 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.11 -1.39 5.16 -26.61 -0.14 -1.53 16 23 C -0.11 -1.14 6.09 -26.65 -0.16 -1.30 16 24 C 0.04 0.42 3.95 -3.83 -0.02 0.40 16 25 N -0.53 -5.45 4.86 -234.68 -1.14 -6.59 16 26 C 0.01 0.08 6.01 -3.83 -0.02 0.06 16 27 C 0.22 1.88 5.14 37.16 0.19 2.07 16 28 F -0.20 -2.49 13.88 2.25 0.03 -2.46 16 29 F -0.20 -2.06 13.93 2.25 0.03 -2.03 16 30 C 0.06 0.73 3.61 -3.83 -0.01 0.72 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 36 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.05 1.37 7.27 -51.93 -0.38 1.00 16 38 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 39 H 0.39 5.25 8.03 -40.82 -0.33 4.92 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.72 7.77 -51.93 -0.40 0.32 16 45 H 0.05 0.64 5.70 -51.93 -0.30 0.35 16 46 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.11 0.67 7.85 -51.93 -0.41 0.26 16 48 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 50 H 0.07 1.11 5.51 -51.93 -0.29 0.82 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -34.59 386.89 -9.63 -44.22 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.29 Total: 3.97 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.89 Total: 6.30 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.41 Total: -62.05 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.06 Total: -4.49 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.59 -9.63 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080342460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.725 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds