Wall clock time and date at job start Wed Apr 1 2020 04:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.91562 * 2 1 4 4 C 1.54908 * 111.00443 * 236.09724 * 2 1 3 5 5 N 1.47426 * 104.83065 * 204.91328 * 4 2 1 6 6 C 1.36939 * 125.64820 * 204.16274 * 5 4 2 7 7 H 1.07998 * 119.99944 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00219 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00124 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46794 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47350 * 119.99879 * 10 8 6 13 13 H 1.48499 * 109.47095 * 240.00025 * 10 8 6 14 14 C 1.47020 * 108.70536 * 24.12856 * 5 4 2 15 15 C 1.54323 * 107.27062 * 358.94088 * 14 5 4 16 16 H 1.08996 * 110.72316 * 96.16702 * 15 14 5 17 17 N 1.46507 * 110.72058 * 219.26743 * 15 14 5 18 18 C 1.34778 * 119.99819 * 271.15332 * 17 15 14 19 19 O 1.21282 * 119.99814 * 0.02562 * 18 17 15 20 20 C 1.50693 * 119.99784 * 179.97438 * 18 17 15 21 21 H 1.09004 * 109.50834 * 59.92543 * 20 18 17 22 22 C 1.53122 * 109.50543 * 299.80497 * 20 18 17 23 23 C 1.53121 * 109.15909 * 182.40750 * 22 20 18 24 24 C 1.53038 * 109.28072 * 57.65541 * 23 22 20 25 25 N 1.46845 * 109.52247 * 300.81907 * 24 23 22 26 26 C 1.46895 * 111.00049 * 185.83807 * 25 24 23 27 27 C 1.52996 * 109.47081 * 312.71203 * 26 25 24 28 28 F 1.39895 * 109.46992 * 306.12218 * 27 26 25 29 29 F 1.39897 * 109.47429 * 66.12682 * 27 26 25 30 30 C 1.46845 * 111.19797 * 61.74032 * 25 24 23 31 31 H 1.08998 * 109.47095 * 296.09676 * 1 2 3 32 32 H 1.08991 * 109.47722 * 56.10121 * 1 2 3 33 33 H 1.09006 * 109.47030 * 176.10598 * 1 2 3 34 34 H 1.08992 * 110.36572 * 86.07771 * 4 2 1 35 35 H 1.08994 * 110.45965 * 323.79791 * 4 2 1 36 36 H 0.96998 * 120.00010 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.88766 * 239.52475 * 14 5 4 38 38 H 1.09003 * 110.01577 * 118.42692 * 14 5 4 39 39 H 0.96994 * 119.99721 * 91.15853 * 17 15 14 40 40 H 1.09005 * 109.51990 * 302.31196 * 22 20 18 41 41 H 1.09003 * 109.52311 * 62.49804 * 22 20 18 42 42 H 1.09001 * 109.50482 * 297.70766 * 23 22 20 43 43 H 1.09004 * 109.53131 * 177.61529 * 23 22 20 44 44 H 1.08997 * 109.45668 * 180.80400 * 24 23 22 45 45 H 1.08999 * 109.46004 * 60.83644 * 24 23 22 46 46 H 1.09004 * 109.46788 * 72.71098 * 26 25 24 47 47 H 1.08996 * 109.47515 * 192.70490 * 26 25 24 48 48 H 1.09005 * 109.46693 * 186.12829 * 27 26 25 49 49 H 1.08999 * 109.46312 * 178.24226 * 30 25 24 50 50 H 1.08999 * 109.46137 * 58.27642 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7733 6 6 4.4645 -1.5653 -1.6071 7 1 4.3339 -1.5100 -2.6778 8 6 5.6838 -1.9631 -1.0763 9 7 5.8428 -2.0309 0.2286 10 14 7.0991 -2.4021 -2.2137 11 1 6.6666 -2.2445 -3.6255 12 1 8.2481 -1.5005 -1.9449 13 1 7.5078 -3.8096 -1.9748 14 6 3.4675 -1.2740 0.6960 15 6 2.0862 -0.8079 1.2023 16 1 1.4468 -1.6631 1.4210 17 7 2.2284 0.0463 2.3840 18 6 2.2518 -0.5038 3.6142 19 8 2.1556 -1.7059 3.7428 20 6 2.3987 0.3747 4.8297 21 1 1.5685 1.0799 4.8717 22 6 3.7202 1.1439 4.7479 23 6 3.8897 1.9878 6.0143 24 6 3.8440 1.0735 7.2407 25 7 2.5605 0.3608 7.2740 26 6 2.4245 -0.4211 8.5101 27 6 3.7085 -1.2165 8.7543 28 9 4.0085 -1.9775 7.6194 29 9 4.7616 -0.3334 9.0155 30 6 2.3963 -0.4928 6.0905 31 1 -0.3633 0.4520 0.9229 32 1 -0.3634 0.5731 -0.8529 33 1 -0.3633 -1.0253 -0.0698 34 1 2.1559 -0.1720 -2.0836 35 1 1.4525 -1.6704 -1.4042 36 1 6.6948 -2.3093 0.5995 37 1 4.2426 -0.5995 1.0600 38 1 3.6663 -2.2882 1.0425 39 1 2.3057 1.0077 2.2811 40 1 4.5476 0.4389 4.6665 41 1 3.7087 1.7959 3.8745 42 1 3.0834 2.7188 6.0751 43 1 4.8484 2.5054 5.9817 44 1 3.9501 1.6731 8.1447 45 1 4.6590 0.3517 7.1860 46 1 2.2494 0.2527 9.3488 47 1 1.5839 -1.1084 8.4146 48 1 3.5687 -1.8784 9.6090 49 1 1.4509 -1.0309 6.1592 50 1 3.2180 -1.2073 6.0412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080342460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:26 Heat of formation + Delta-G solvation = -134.129720 kcal Electronic energy + Delta-G solvation = -32322.928410 eV Core-core repulsion = 27827.180372 eV Total energy + Delta-G solvation = -4495.748038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.13724 -48.04260 -41.36895 -39.78688 -38.77045 -35.67063 -35.09267 -34.12687 -32.21102 -32.04343 -30.09720 -29.37687 -27.39405 -25.79117 -25.32078 -24.51771 -23.21541 -22.30424 -21.54801 -21.29898 -20.56497 -18.91215 -18.69725 -18.38499 -18.06747 -17.44332 -17.36518 -16.90727 -16.36603 -16.04626 -15.80835 -15.61328 -15.35948 -15.13198 -14.90479 -14.66737 -14.63136 -14.30250 -14.17640 -14.09726 -14.05430 -13.72606 -13.55211 -13.34294 -13.18802 -13.04105 -12.91380 -12.80355 -12.62475 -12.56094 -12.25409 -12.14311 -12.01743 -11.88107 -11.81080 -11.69060 -11.63707 -11.47960 -11.38323 -10.79046 -10.68384 -9.98106 -9.29753 -8.94925 -7.86845 -5.25083 1.42001 1.44036 1.54559 1.65496 2.13284 2.47075 2.71543 3.05210 3.31655 3.39767 3.52573 3.58333 3.63603 3.73596 3.81128 3.86119 3.90607 4.06471 4.10499 4.17167 4.20503 4.37524 4.49334 4.52523 4.57071 4.61336 4.70647 4.71856 4.73430 4.78689 4.87824 4.92587 4.97631 5.06609 5.07806 5.08323 5.15223 5.24571 5.29978 5.37304 5.43274 5.49825 5.61733 5.78741 5.89013 5.95415 6.14281 6.61864 7.04169 7.32387 7.73790 8.37558 9.22341 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.003029 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.539834 B = 9242.576275 C =10585.160456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 H 0.093 0.907 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.240 4.240 7 H 0.090 0.910 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.980 3.020 11 H -0.259 1.259 12 H -0.291 1.291 13 H -0.297 1.297 14 C 0.190 3.810 15 C 0.136 3.864 16 H 0.070 0.930 17 N -0.699 5.699 18 C 0.512 3.488 19 O -0.588 6.588 20 C -0.087 4.087 21 H 0.133 0.867 22 C -0.113 4.113 23 C -0.107 4.107 24 C 0.040 3.960 25 N -0.524 5.524 26 C 0.009 3.991 27 C 0.208 3.792 28 F -0.225 7.225 29 F -0.214 7.214 30 C 0.062 3.938 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.024 0.976 36 H 0.243 0.757 37 H 0.016 0.984 38 H -0.016 1.016 39 H 0.413 0.587 40 H 0.031 0.969 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.025 0.975 46 H 0.138 0.862 47 H 0.118 0.882 48 H 0.148 0.852 49 H 0.078 0.922 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 11.648 18.119 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.112 4.112 3 H 0.111 0.889 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.107 0.893 8 C -0.263 4.263 9 N -0.603 5.603 10 Si 0.808 3.192 11 H -0.183 1.183 12 H -0.218 1.218 13 H -0.224 1.224 14 C 0.064 3.936 15 C 0.029 3.971 16 H 0.088 0.912 17 N -0.350 5.350 18 C 0.300 3.700 19 O -0.468 6.468 20 C -0.108 4.108 21 H 0.151 0.849 22 C -0.151 4.151 23 C -0.145 4.145 24 C -0.087 4.087 25 N -0.246 5.246 26 C -0.120 4.120 27 C 0.153 3.847 28 F -0.207 7.207 29 F -0.195 7.195 30 C -0.066 4.066 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.034 0.966 38 H 0.003 0.997 39 H 0.250 0.750 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.043 0.957 46 H 0.156 0.844 47 H 0.136 0.864 48 H 0.165 0.835 49 H 0.097 0.903 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.028 11.105 18.154 24.446 hybrid contribution 2.296 -1.321 -0.719 2.745 sum -9.732 9.784 17.436 22.236 Atomic orbital electron populations 1.21647 0.91586 1.02207 1.03137 1.22530 0.97366 0.98869 0.92435 0.88888 1.21874 0.85175 0.95803 0.96531 1.44749 1.09529 1.79203 1.01984 1.19570 0.90047 1.37419 0.89869 0.89261 1.25742 1.00769 1.02430 0.97397 1.70266 1.24039 1.54788 1.11226 0.84981 0.78876 0.76717 0.78610 1.18286 1.21800 1.22411 1.21077 0.92850 0.96229 0.83487 1.22024 0.96215 0.93683 0.85132 0.91151 1.45738 1.73548 1.10939 1.04773 1.21228 0.74602 0.88637 0.85554 1.90686 1.51398 1.17605 1.87136 1.21244 1.01685 0.97366 0.90555 0.84907 1.21584 0.94460 0.98477 1.00541 1.21583 1.03615 0.97533 0.91725 1.22553 0.89019 0.96938 1.00198 1.62065 1.33599 1.27800 1.01185 1.23644 0.94999 0.98237 0.95134 1.23465 0.86370 0.87329 0.87509 1.92934 1.94516 1.77569 1.55686 1.92935 1.61562 1.70851 1.94180 1.22058 1.02050 0.93697 0.88819 0.91168 0.90270 0.93187 0.92548 0.95776 0.94795 0.96579 0.99747 0.75018 0.94961 0.89748 0.88835 0.90145 0.88412 0.95690 0.84440 0.86354 0.83469 0.90308 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.31 71.98 0.67 -2.31 16 2 C -0.09 -2.93 3.26 -9.40 -0.03 -2.96 16 3 H 0.09 2.70 8.01 -2.38 -0.02 2.68 16 4 C 0.13 5.29 6.70 86.85 0.58 5.87 16 5 N -0.63 -33.51 3.39 -692.01 -2.35 -35.86 16 6 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 7 H 0.09 4.85 7.83 -2.91 -0.02 4.82 16 8 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 9 N -0.95 -61.43 10.31 21.65 0.22 -61.20 16 10 Si 0.98 47.62 29.55 68.60 2.03 49.64 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 13 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 14 C 0.19 10.18 5.12 86.73 0.44 10.62 16 15 C 0.14 5.36 2.74 46.18 0.13 5.49 16 16 H 0.07 3.03 7.52 -2.39 -0.02 3.01 16 17 N -0.70 -22.61 5.03 -436.91 -2.20 -24.81 16 18 C 0.51 17.78 7.15 87.65 0.63 18.41 16 19 O -0.59 -26.49 15.67 -3.04 -0.05 -26.54 16 20 C -0.09 -2.19 2.69 -11.49 -0.03 -2.22 16 21 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 22 C -0.11 -2.72 5.16 30.68 0.16 -2.56 16 23 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 24 C 0.04 0.79 3.95 86.33 0.34 1.13 16 25 N -0.52 -9.94 4.86 -896.40 -4.35 -14.30 16 26 C 0.01 0.11 6.01 86.30 0.52 0.63 16 27 C 0.21 3.40 5.14 71.98 0.37 3.77 16 28 F -0.23 -6.10 13.88 44.97 0.62 -5.48 16 29 F -0.21 -4.24 13.93 44.97 0.63 -3.61 16 30 C 0.06 1.61 3.61 86.33 0.31 1.92 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.24 8.08 -2.38 -0.02 1.22 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.02 0.97 7.99 -2.39 -0.02 0.96 16 36 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.02 0.95 7.27 -2.39 -0.02 0.93 16 38 H -0.02 -1.02 7.51 -2.39 -0.02 -1.04 16 39 H 0.41 10.30 8.03 -92.71 -0.74 9.56 16 40 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.08 1.80 7.66 -2.39 -0.02 1.78 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.10 1.56 7.77 -2.39 -0.02 1.54 16 45 H 0.02 0.64 5.70 -2.39 -0.01 0.62 16 46 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.12 1.25 7.85 -2.39 -0.02 1.23 16 48 H 0.15 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 50 H 0.04 1.19 5.51 -2.39 -0.01 1.17 16 Total: -1.00 -83.01 386.89 0.35 -82.66 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.20 Total: 20.24 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 5.60 Total: 19.25 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -8.68 Total: -136.17 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 1.25 Total: -9.09 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -83.01 0.35 -82.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080342460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.471 kcal (2) G-P(sol) polarization free energy of solvation -83.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds