Wall clock time and date at job start Wed Apr 1 2020 03:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.88551 * 2 1 4 4 C 1.54910 * 111.00475 * 236.12280 * 2 1 3 5 5 N 1.47429 * 104.92717 * 204.85885 * 4 2 1 6 6 C 1.34773 * 125.64888 * 204.14822 * 5 4 2 7 7 O 1.21276 * 120.00273 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00062 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.87627 * 10.73445 * 8 6 5 10 10 C 1.54322 * 109.88940 * 249.53764 * 8 6 5 11 11 C 1.55139 * 103.02045 * 218.30792 * 10 8 6 12 12 C 1.54909 * 101.65001 * 35.65561 * 11 10 8 13 13 N 1.47437 * 109.88979 * 131.76881 * 8 6 5 14 14 C 1.38408 * 111.00259 * 356.14902 * 13 8 6 15 15 N 1.32495 * 119.21298 * 286.31392 * 14 13 8 16 16 C 1.32279 * 120.73550 * 179.71420 * 15 14 13 17 17 C 1.38607 * 119.19872 * 0.54454 * 16 15 14 18 18 C 1.38605 * 118.55958 * 359.72270 * 17 16 15 19 19 N 1.32285 * 119.19351 * 0.02562 * 18 17 16 20 20 C 1.47288 * 108.55594 * 24.15853 * 5 4 2 21 21 C 1.54319 * 107.31043 * 358.91901 * 20 5 4 22 22 H 1.09001 * 110.72237 * 96.17981 * 21 20 5 23 23 N 1.46495 * 110.72453 * 219.45657 * 21 20 5 24 24 C 1.36929 * 120.00387 * 268.52569 * 23 21 20 25 25 H 1.08003 * 120.00255 * 359.97438 * 24 23 21 26 26 C 1.38816 * 120.00399 * 180.02562 * 24 23 21 27 27 N 1.31618 * 119.99696 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00183 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.46983 * 359.97438 * 28 26 24 30 30 H 1.48490 * 109.47143 * 119.99601 * 28 26 24 31 31 H 1.48504 * 109.46953 * 240.00069 * 28 26 24 32 32 H 1.08996 * 109.47304 * 182.42553 * 1 2 3 33 33 H 1.09001 * 109.47317 * 302.42694 * 1 2 3 34 34 H 1.09008 * 109.46926 * 62.42586 * 1 2 3 35 35 H 1.08995 * 110.36735 * 323.74852 * 4 2 1 36 36 H 1.09000 * 110.36853 * 85.97119 * 4 2 1 37 37 H 1.08998 * 110.70698 * 336.69517 * 10 8 6 38 38 H 1.09009 * 110.70331 * 99.92726 * 10 8 6 39 39 H 1.09002 * 110.99341 * 277.56481 * 11 10 8 40 40 H 1.08994 * 110.99081 * 153.74355 * 11 10 8 41 41 H 1.09004 * 110.37282 * 204.10277 * 12 11 10 42 42 H 1.08994 * 110.47073 * 81.80448 * 12 11 10 43 43 H 1.07996 * 120.40443 * 180.29236 * 16 15 14 44 44 H 1.08000 * 120.72307 * 179.71286 * 17 16 15 45 45 H 1.07998 * 120.40871 * 180.02562 * 18 17 16 46 46 H 1.09003 * 109.85192 * 239.49916 * 20 5 4 47 47 H 1.08999 * 109.87761 * 118.35750 * 20 5 4 48 48 H 0.97007 * 119.99641 * 88.51817 * 23 21 20 49 49 H 0.96998 * 119.99705 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4280 -1.2427 -0.7765 6 6 4.4473 -1.5594 -1.5994 7 8 4.2986 -1.4958 -2.8013 8 6 5.7719 -1.9926 -1.0259 9 1 5.6707 -2.1748 0.0440 10 6 6.8349 -0.9028 -1.2782 11 6 8.1097 -1.7259 -1.6010 12 6 7.5172 -2.9285 -2.3771 13 7 6.2343 -3.2186 -1.7019 14 6 5.2898 -3.6730 -2.6059 15 7 4.1876 -4.2524 -2.1531 16 6 3.2626 -4.6926 -2.9899 17 6 3.4627 -4.5517 -4.3542 18 6 4.6293 -3.9458 -4.7936 19 7 5.5118 -3.5231 -3.9034 20 6 3.4674 -1.2744 0.6955 21 6 2.0861 -0.8084 1.2019 22 1 1.4467 -1.6637 1.4202 23 7 2.2286 0.0486 2.3815 24 6 2.1999 -0.5016 3.6351 25 1 2.0719 -1.5674 3.7543 26 6 2.3344 0.3104 4.7528 27 7 2.4898 1.6093 4.6077 28 14 2.2946 -0.4402 6.4630 29 1 2.1096 -1.9096 6.3544 30 1 3.5737 -0.1520 7.1599 31 1 1.1680 0.1444 7.2340 32 1 -0.3634 -1.0267 0.0435 33 1 -0.3634 0.5511 0.8674 34 1 -0.3633 0.4757 -0.9110 35 1 1.4519 -1.6698 -1.4031 36 1 2.1542 -0.1716 -2.0842 37 1 6.5536 -0.2791 -2.1267 38 1 6.9840 -0.2958 -0.3851 39 1 8.6033 -2.0560 -0.6870 40 1 8.7943 -1.1554 -2.2285 41 1 8.1838 -3.7885 -2.3108 42 1 7.3454 -2.6620 -3.4199 43 1 2.3640 -5.1599 -2.6148 44 1 2.7258 -4.9065 -5.0595 45 1 4.8157 -3.8203 -5.8500 46 1 4.2425 -0.6001 1.0597 47 1 3.6650 -2.2897 1.0391 48 1 2.3433 1.0059 2.2745 49 1 2.5842 2.1767 5.3887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082571170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:37 Heat of formation + Delta-G solvation = 67.521114 kcal Electronic energy + Delta-G solvation = -31859.926372 eV Core-core repulsion = 27823.611756 eV Total energy + Delta-G solvation = -4036.314615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68137 -39.86547 -38.56680 -37.09780 -34.12232 -33.63945 -33.09557 -32.53499 -30.77789 -29.85982 -29.62370 -27.55231 -26.25777 -24.57090 -24.09374 -23.87223 -22.31170 -21.32124 -21.22189 -19.99760 -19.26919 -17.75223 -17.41396 -17.22261 -17.00198 -16.03476 -15.93468 -15.63735 -15.14047 -14.76166 -14.69473 -14.32498 -13.81181 -13.69286 -13.56605 -13.40160 -13.21625 -13.11279 -12.80218 -12.63122 -12.59710 -12.19295 -12.12412 -11.74863 -11.55430 -11.38361 -11.17997 -11.13791 -11.01950 -10.78806 -10.72527 -10.69068 -10.63631 -10.26282 -10.07463 -9.99258 -9.84247 -9.72687 -9.14514 -9.03377 -8.46560 -8.30615 -7.12553 -5.87757 -3.18647 0.96310 1.21202 2.55140 3.11643 3.27685 3.37940 3.44822 3.46284 3.83902 4.19240 4.38553 4.46808 4.50724 4.59681 4.62685 4.83643 4.94738 5.03969 5.09180 5.12366 5.16807 5.18608 5.23908 5.38660 5.54347 5.59695 5.64493 5.67326 5.71709 5.73117 5.77903 5.79042 5.83852 5.87751 5.95193 6.04766 6.17055 6.21608 6.23878 6.35268 6.41541 6.43985 6.51940 6.57898 6.77230 6.82759 7.23973 7.62005 7.71638 8.20530 8.22361 8.29635 9.41811 9.94713 10.29826 11.34128 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.003300 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.877638 B = 8483.193364 C = 9392.694321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.522 3.478 7 O -0.552 6.552 8 C 0.073 3.927 9 H 0.116 0.884 10 C -0.128 4.128 11 C -0.124 4.124 12 C 0.039 3.961 13 N -0.447 5.447 14 C 0.505 3.495 15 N -0.518 5.518 16 C 0.169 3.831 17 C -0.255 4.255 18 C 0.173 3.827 19 N -0.528 5.528 20 C 0.070 3.930 21 C 0.180 3.820 22 H 0.070 0.930 23 N -0.710 5.710 24 C -0.248 4.248 25 H 0.074 0.926 26 C -0.007 4.007 27 N -0.929 5.929 28 Si 0.907 3.093 29 H -0.279 1.279 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.164 0.836 44 H 0.141 0.859 45 H 0.161 0.839 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.387 0.613 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -8.970 -17.747 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.309 3.691 7 O -0.431 6.431 8 C -0.037 4.037 9 H 0.134 0.866 10 C -0.167 4.167 11 C -0.162 4.162 12 C -0.087 4.087 13 N -0.170 5.170 14 C 0.150 3.850 15 N -0.236 5.236 16 C 0.002 3.998 17 C -0.278 4.278 18 C 0.005 3.995 19 N -0.246 5.246 20 C -0.056 4.056 21 C 0.067 3.933 22 H 0.088 0.912 23 N -0.350 5.350 24 C -0.379 4.379 25 H 0.091 0.909 26 C -0.204 4.204 27 N -0.577 5.577 28 Si 0.738 3.262 29 H -0.204 1.204 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.181 0.819 44 H 0.159 0.841 45 H 0.178 0.822 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.221 0.779 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.607 -9.097 -17.153 20.209 hybrid contribution -0.777 0.130 -0.090 0.793 sum 4.830 -8.967 -17.243 20.026 Atomic orbital electron populations 1.21589 0.93828 1.01816 1.01713 1.22657 0.96386 0.99713 0.94673 0.89931 1.22224 0.82810 0.97941 0.97729 1.48528 1.11566 1.64429 1.08306 1.20380 0.85174 0.77189 0.86318 1.90705 1.83047 1.54853 1.14464 1.22584 0.92290 0.88072 1.00796 0.86622 1.22770 0.93593 0.96872 1.03428 1.22707 0.96818 0.95756 1.00953 1.23228 0.87502 0.98522 0.99492 1.60624 1.02416 1.28375 1.25537 1.20752 0.88183 0.89673 0.86374 1.67976 1.02549 1.12761 1.40284 1.22976 0.95953 0.91325 0.89580 1.22653 1.00777 1.06213 0.98199 1.22869 0.88653 0.88737 0.99198 1.68142 1.34691 1.18944 1.02857 1.23480 1.03425 1.01629 0.77053 1.21226 0.91482 0.93775 0.86807 0.91244 1.42361 1.86266 1.06201 1.00135 1.19304 1.42752 0.92663 0.83141 0.90853 1.24758 1.02255 0.95418 0.97977 1.69669 1.56069 1.02873 1.29045 0.86130 0.77244 0.78284 0.84591 1.20395 1.21763 1.21813 0.92806 0.91336 0.93320 0.91855 0.91363 0.90311 0.89125 0.90059 0.89813 0.89662 0.88983 0.81915 0.84118 0.82223 0.90838 0.91654 0.77897 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.29 37.15 0.35 -1.51 16 2 C -0.11 -1.80 3.27 -88.47 -0.29 -2.09 16 3 H 0.08 1.38 8.01 -51.93 -0.42 0.96 16 4 C 0.12 1.77 6.37 -2.53 -0.02 1.76 16 5 N -0.60 -9.80 3.34 -170.31 -0.57 -10.37 16 6 C 0.52 8.78 5.01 -10.99 -0.06 8.72 16 7 O -0.55 -10.34 14.23 5.56 0.08 -10.26 16 8 C 0.07 1.08 3.60 -67.88 -0.24 0.83 16 9 H 0.12 1.73 6.74 -51.93 -0.35 1.38 16 10 C -0.13 -1.57 6.46 -24.91 -0.16 -1.73 16 11 C -0.12 -1.24 7.08 -24.59 -0.17 -1.42 16 12 C 0.04 0.47 6.50 -2.30 -0.01 0.46 16 13 N -0.45 -6.64 5.25 -165.99 -0.87 -7.51 16 14 C 0.51 8.00 4.32 -322.81 -1.39 6.60 16 15 N -0.52 -8.20 9.48 -13.93 -0.13 -8.33 16 16 C 0.17 2.13 11.30 -17.22 -0.19 1.93 16 17 C -0.26 -2.73 10.16 -39.31 -0.40 -3.13 16 18 C 0.17 2.07 11.28 -17.22 -0.19 1.87 16 19 N -0.53 -7.79 7.29 -13.93 -0.10 -7.89 16 20 C 0.07 1.20 5.63 -2.92 -0.02 1.19 16 21 C 0.18 3.31 3.08 -66.10 -0.20 3.10 16 22 H 0.07 1.31 7.96 -51.93 -0.41 0.89 16 23 N -0.71 -16.35 5.15 -51.66 -0.27 -16.62 16 24 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 25 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 26 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 27 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 28 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 32 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 37 H 0.08 1.06 7.79 -51.93 -0.40 0.66 16 38 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.21 6.35 -51.93 -0.33 0.88 16 43 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 47 H 0.07 1.13 7.97 -51.93 -0.41 0.72 16 48 H 0.39 9.58 7.76 -40.82 -0.32 9.26 16 49 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -32.34 391.43 -11.19 -43.52 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.67 Total: 11.37 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -3.26 Total: 9.72 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.21 Total: -76.69 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.34 -11.19 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082571170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.043 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds