Wall clock time and date at job start Wed Apr 1 2020 03:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.88551 * 2 1 4 4 C 1.54910 * 111.00475 * 236.12280 * 2 1 3 5 5 N 1.47429 * 104.92717 * 204.85885 * 4 2 1 6 6 C 1.34773 * 125.64888 * 204.14822 * 5 4 2 7 7 O 1.21276 * 120.00273 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00062 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.87627 * 10.73445 * 8 6 5 10 10 C 1.54322 * 109.88940 * 249.53764 * 8 6 5 11 11 C 1.55139 * 103.02045 * 218.30792 * 10 8 6 12 12 C 1.54909 * 101.65001 * 35.65561 * 11 10 8 13 13 N 1.47437 * 109.88979 * 131.76881 * 8 6 5 14 14 C 1.38408 * 111.00259 * 356.14902 * 13 8 6 15 15 N 1.32495 * 119.21298 * 286.31392 * 14 13 8 16 16 C 1.32279 * 120.73550 * 179.71420 * 15 14 13 17 17 C 1.38607 * 119.19872 * 0.54454 * 16 15 14 18 18 C 1.38605 * 118.55958 * 359.72270 * 17 16 15 19 19 N 1.32285 * 119.19351 * 0.02562 * 18 17 16 20 20 C 1.47288 * 108.55594 * 24.15853 * 5 4 2 21 21 C 1.54319 * 107.31043 * 358.91901 * 20 5 4 22 22 H 1.09001 * 110.72237 * 96.17981 * 21 20 5 23 23 N 1.46495 * 110.72453 * 219.45657 * 21 20 5 24 24 C 1.36929 * 120.00387 * 268.52569 * 23 21 20 25 25 H 1.08003 * 120.00255 * 359.97438 * 24 23 21 26 26 C 1.38816 * 120.00399 * 180.02562 * 24 23 21 27 27 N 1.31618 * 119.99696 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00183 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.46983 * 359.97438 * 28 26 24 30 30 H 1.48490 * 109.47143 * 119.99601 * 28 26 24 31 31 H 1.48504 * 109.46953 * 240.00069 * 28 26 24 32 32 H 1.08996 * 109.47304 * 182.42553 * 1 2 3 33 33 H 1.09001 * 109.47317 * 302.42694 * 1 2 3 34 34 H 1.09008 * 109.46926 * 62.42586 * 1 2 3 35 35 H 1.08995 * 110.36735 * 323.74852 * 4 2 1 36 36 H 1.09000 * 110.36853 * 85.97119 * 4 2 1 37 37 H 1.08998 * 110.70698 * 336.69517 * 10 8 6 38 38 H 1.09009 * 110.70331 * 99.92726 * 10 8 6 39 39 H 1.09002 * 110.99341 * 277.56481 * 11 10 8 40 40 H 1.08994 * 110.99081 * 153.74355 * 11 10 8 41 41 H 1.09004 * 110.37282 * 204.10277 * 12 11 10 42 42 H 1.08994 * 110.47073 * 81.80448 * 12 11 10 43 43 H 1.07996 * 120.40443 * 180.29236 * 16 15 14 44 44 H 1.08000 * 120.72307 * 179.71286 * 17 16 15 45 45 H 1.07998 * 120.40871 * 180.02562 * 18 17 16 46 46 H 1.09003 * 109.85192 * 239.49916 * 20 5 4 47 47 H 1.08999 * 109.87761 * 118.35750 * 20 5 4 48 48 H 0.97007 * 119.99641 * 88.51817 * 23 21 20 49 49 H 0.96998 * 119.99705 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4280 -1.2427 -0.7765 6 6 4.4473 -1.5594 -1.5994 7 8 4.2986 -1.4958 -2.8013 8 6 5.7719 -1.9926 -1.0259 9 1 5.6707 -2.1748 0.0440 10 6 6.8349 -0.9028 -1.2782 11 6 8.1097 -1.7259 -1.6010 12 6 7.5172 -2.9285 -2.3771 13 7 6.2343 -3.2186 -1.7019 14 6 5.2898 -3.6730 -2.6059 15 7 4.1876 -4.2524 -2.1531 16 6 3.2626 -4.6926 -2.9899 17 6 3.4627 -4.5517 -4.3542 18 6 4.6293 -3.9458 -4.7936 19 7 5.5118 -3.5231 -3.9034 20 6 3.4674 -1.2744 0.6955 21 6 2.0861 -0.8084 1.2019 22 1 1.4467 -1.6637 1.4202 23 7 2.2286 0.0486 2.3815 24 6 2.1999 -0.5016 3.6351 25 1 2.0719 -1.5674 3.7543 26 6 2.3344 0.3104 4.7528 27 7 2.4898 1.6093 4.6077 28 14 2.2946 -0.4402 6.4630 29 1 2.1096 -1.9096 6.3544 30 1 3.5737 -0.1520 7.1599 31 1 1.1680 0.1444 7.2340 32 1 -0.3634 -1.0267 0.0435 33 1 -0.3634 0.5511 0.8674 34 1 -0.3633 0.4757 -0.9110 35 1 1.4519 -1.6698 -1.4031 36 1 2.1542 -0.1716 -2.0842 37 1 6.5536 -0.2791 -2.1267 38 1 6.9840 -0.2958 -0.3851 39 1 8.6033 -2.0560 -0.6870 40 1 8.7943 -1.1554 -2.2285 41 1 8.1838 -3.7885 -2.3108 42 1 7.3454 -2.6620 -3.4199 43 1 2.3640 -5.1599 -2.6148 44 1 2.7258 -4.9065 -5.0595 45 1 4.8157 -3.8203 -5.8500 46 1 4.2425 -0.6001 1.0597 47 1 3.6650 -2.2897 1.0391 48 1 2.3433 1.0059 2.2745 49 1 2.5842 2.1767 5.3887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082571170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:36 Heat of formation + Delta-G solvation = 46.446288 kcal Electronic energy + Delta-G solvation = -31860.840245 eV Core-core repulsion = 27823.611756 eV Total energy + Delta-G solvation = -4037.228488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.73846 -41.04712 -39.74959 -38.39328 -35.88114 -34.63829 -34.15585 -33.84257 -32.54835 -30.83925 -30.65042 -29.17588 -27.44816 -25.88692 -25.50250 -24.92409 -23.59455 -22.54758 -22.21675 -21.42790 -20.44985 -19.11426 -18.95778 -18.42242 -18.15038 -17.32158 -17.04795 -16.82464 -16.30442 -16.23643 -15.66265 -15.58371 -15.36284 -15.12813 -14.71126 -14.63137 -14.48863 -14.27065 -14.10486 -13.90131 -13.73476 -13.46922 -13.25734 -13.01566 -12.88011 -12.85656 -12.74514 -12.30431 -12.22149 -12.13097 -12.04194 -12.02479 -11.75587 -11.71472 -11.64363 -11.47998 -11.15613 -11.00309 -10.86609 -10.13470 -9.74847 -9.40519 -9.05975 -7.93621 -5.23421 0.00515 0.27656 1.31938 1.50514 1.52161 1.60975 1.83913 2.26349 2.57478 2.88068 3.12412 3.36304 3.38577 3.45258 3.57593 3.70801 3.77190 3.80414 3.85110 3.88566 4.07245 4.17368 4.21739 4.30383 4.30960 4.37024 4.41857 4.47562 4.57400 4.57886 4.72569 4.75505 4.80401 4.82484 4.87198 4.91662 4.96934 5.05809 5.08202 5.15551 5.20937 5.29280 5.34631 5.43958 5.45763 5.56462 5.77969 6.26644 6.28699 6.37216 6.92344 7.22181 7.35159 8.04909 8.29859 9.29243 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.003300 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.877638 B = 8483.193364 C = 9392.694321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 H 0.071 0.929 4 C 0.122 3.878 5 N -0.599 5.599 6 C 0.523 3.477 7 O -0.571 6.571 8 C 0.070 3.930 9 H 0.108 0.892 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.039 3.961 13 N -0.458 5.458 14 C 0.483 3.517 15 N -0.551 5.551 16 C 0.149 3.851 17 C -0.240 4.240 18 C 0.156 3.844 19 N -0.545 5.545 20 C 0.087 3.913 21 C 0.176 3.824 22 H 0.070 0.930 23 N -0.719 5.719 24 C -0.240 4.240 25 H 0.079 0.921 26 C -0.067 4.067 27 N -0.966 5.966 28 Si 0.966 3.034 29 H -0.266 1.266 30 H -0.296 1.296 31 H -0.296 1.296 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.188 0.812 44 H 0.180 0.820 45 H 0.192 0.808 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.376 0.624 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 -10.338 -19.140 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.122 4.122 3 H 0.090 0.910 4 C 0.000 4.000 5 N -0.331 5.331 6 C 0.311 3.689 7 O -0.451 6.451 8 C -0.040 4.040 9 H 0.126 0.874 10 C -0.164 4.164 11 C -0.149 4.149 12 C -0.088 4.088 13 N -0.182 5.182 14 C 0.128 3.872 15 N -0.269 5.269 16 C -0.017 4.017 17 C -0.262 4.262 18 C -0.011 4.011 19 N -0.263 5.263 20 C -0.039 4.039 21 C 0.065 3.935 22 H 0.088 0.912 23 N -0.357 5.357 24 C -0.372 4.372 25 H 0.097 0.903 26 C -0.259 4.259 27 N -0.616 5.616 28 Si 0.796 3.204 29 H -0.190 1.190 30 H -0.223 1.223 31 H -0.223 1.223 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.205 0.795 44 H 0.198 0.802 45 H 0.209 0.791 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.208 0.792 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.373 -10.517 -18.593 22.027 hybrid contribution -0.761 0.467 0.176 0.910 sum 4.611 -10.050 -18.417 21.482 Atomic orbital electron populations 1.21545 0.92209 1.02523 1.02066 1.22542 0.97628 0.98681 0.93392 0.91023 1.22213 0.82429 0.98163 0.97223 1.48546 1.12143 1.64635 1.07739 1.20706 0.85651 0.76478 0.86044 1.90676 1.83467 1.55687 1.15237 1.22618 0.91997 0.89167 1.00211 0.87418 1.22775 0.94028 0.96394 1.03229 1.22723 0.95950 0.94625 1.01645 1.23296 0.86822 0.99760 0.98902 1.60681 1.03186 1.28092 1.26206 1.20883 0.88700 0.90671 0.86956 1.67955 1.03372 1.13809 1.41763 1.23559 0.96253 0.91373 0.90492 1.23061 1.00810 1.04243 0.98121 1.23572 0.88744 0.88368 1.00387 1.68158 1.35751 1.19601 1.02838 1.23085 1.02045 1.01049 0.77739 1.21362 0.92147 0.93602 0.86351 0.91180 1.42443 1.86442 1.06107 1.00744 1.19640 1.40416 0.92864 0.84248 0.90313 1.25461 1.03364 0.95832 1.01274 1.69808 1.58295 1.04055 1.29419 0.85180 0.76498 0.78154 0.80566 1.18995 1.22289 1.22341 0.91703 0.93198 0.90942 0.90749 0.91333 0.91718 0.88217 0.88745 0.87625 0.88552 0.90230 0.79483 0.80218 0.79071 0.92102 0.91787 0.79157 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.29 71.98 0.67 -2.68 16 2 C -0.10 -3.15 3.27 -9.40 -0.03 -3.18 16 3 H 0.07 2.39 8.01 -2.39 -0.02 2.37 16 4 C 0.12 3.60 6.37 86.85 0.55 4.15 16 5 N -0.60 -19.46 3.34 -811.13 -2.71 -22.17 16 6 C 0.52 17.48 5.01 87.66 0.44 17.92 16 7 O -0.57 -21.16 14.23 -3.02 -0.04 -21.21 16 8 C 0.07 2.08 3.60 44.51 0.16 2.24 16 9 H 0.11 3.28 6.74 -2.39 -0.02 3.26 16 10 C -0.13 -3.02 6.46 31.78 0.21 -2.82 16 11 C -0.11 -2.07 7.08 31.98 0.23 -1.84 16 12 C 0.04 0.90 6.50 86.77 0.56 1.46 16 13 N -0.46 -13.54 5.25 -679.07 -3.56 -17.10 16 14 C 0.48 15.12 4.32 261.49 1.13 16.25 16 15 N -0.55 -17.11 9.48 -197.98 -1.88 -18.99 16 16 C 0.15 3.51 11.30 84.71 0.96 4.47 16 17 C -0.24 -4.52 10.16 22.45 0.23 -4.29 16 18 C 0.16 3.43 11.28 84.71 0.96 4.38 16 19 N -0.54 -15.64 7.29 -197.98 -1.44 -17.08 16 20 C 0.09 2.99 5.63 86.68 0.49 3.48 16 21 C 0.18 6.43 3.08 46.18 0.14 6.57 16 22 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 23 N -0.72 -33.37 5.15 -317.34 -1.63 -35.00 16 24 C -0.24 -12.42 9.96 84.04 0.84 -11.58 16 25 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 26 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 27 N -0.97 -56.47 13.06 21.65 0.28 -56.18 16 28 Si 0.97 44.31 29.55 68.60 2.03 46.34 16 29 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 30 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 31 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 32 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 36 H 0.07 2.04 8.03 -2.39 -0.02 2.03 16 37 H 0.06 1.74 7.79 -2.39 -0.02 1.72 16 38 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.08 2.06 6.35 -2.39 -0.02 2.05 16 43 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 46 H 0.06 2.26 8.03 -2.39 -0.02 2.24 16 47 H 0.06 2.22 7.97 -2.39 -0.02 2.20 16 48 H 0.38 19.01 7.76 -92.70 -0.72 18.29 16 49 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -70.48 391.43 -0.73 -71.21 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.24 Total: 38.82 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 7.99 Total: 31.37 kcal Atomic # 7 Polarization: -155.59 SS G_CDS: -10.94 Total: -166.53 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.21 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.48 -0.73 -71.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082571170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.652 kcal (2) G-P(sol) polarization free energy of solvation -70.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds