Wall clock time and date at job start Wed Apr 1 2020 03:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.64153 * 2 1 4 4 C 1.54326 * 110.71916 * 236.86187 * 2 1 3 5 5 N 1.47021 * 107.27106 * 219.26620 * 4 2 1 6 6 C 1.34778 * 125.65021 * 178.90285 * 5 4 2 7 7 O 1.21277 * 120.00045 * 174.75144 * 6 5 4 8 8 C 1.50702 * 119.99810 * 354.75464 * 6 5 4 9 9 H 1.08999 * 109.50455 * 328.13538 * 8 6 5 10 10 C 1.53119 * 109.50216 * 88.20888 * 8 6 5 11 11 C 1.53120 * 109.15758 * 177.55362 * 10 8 6 12 12 C 1.53037 * 109.31174 * 302.40580 * 11 10 8 13 13 N 1.46846 * 109.52374 * 59.15822 * 12 11 10 14 14 C 1.46895 * 111.00285 * 174.16020 * 13 12 11 15 15 C 1.52995 * 109.47132 * 48.15688 * 14 13 12 16 16 F 1.39902 * 109.46862 * 294.03091 * 15 14 13 17 17 F 1.39901 * 109.47461 * 54.02898 * 15 14 13 18 18 C 1.46845 * 111.19780 * 298.26197 * 13 12 11 19 19 C 1.47428 * 108.70405 * 358.93944 * 5 4 2 20 20 C 1.54907 * 104.83189 * 24.12573 * 19 5 4 21 21 H 1.09009 * 111.00102 * 81.06658 * 20 19 5 22 22 N 1.46496 * 111.00763 * 204.91722 * 20 19 5 23 23 C 1.36939 * 119.99913 * 267.20033 * 22 20 19 24 24 H 1.07996 * 120.00375 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99743 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99799 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99944 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47246 * 89.99974 * 27 25 23 29 29 H 1.48500 * 109.46714 * 209.99843 * 27 25 23 30 30 H 1.48493 * 109.47171 * 329.99795 * 27 25 23 31 31 H 1.08999 * 109.47238 * 179.29618 * 1 2 3 32 32 H 1.09004 * 109.46857 * 299.29669 * 1 2 3 33 33 H 1.08999 * 109.47350 * 59.29520 * 1 2 3 34 34 H 1.08999 * 109.88137 * 338.68021 * 4 2 1 35 35 H 1.09000 * 109.88591 * 99.84505 * 4 2 1 36 36 H 1.08997 * 109.52659 * 297.49745 * 10 8 6 37 37 H 1.09000 * 109.52278 * 57.69206 * 10 8 6 38 38 H 1.09000 * 109.50944 * 182.44518 * 11 10 8 39 39 H 1.09008 * 109.50420 * 62.36596 * 11 10 8 40 40 H 1.08992 * 109.46390 * 299.14266 * 12 11 10 41 41 H 1.09006 * 109.45160 * 179.16571 * 12 11 10 42 42 H 1.09000 * 109.47073 * 168.15448 * 14 13 12 43 43 H 1.09004 * 109.47059 * 288.15687 * 14 13 12 44 44 H 1.08998 * 109.47575 * 174.03542 * 15 14 13 45 45 H 1.09004 * 109.45746 * 301.72153 * 18 13 12 46 46 H 1.09005 * 109.45781 * 181.75472 * 18 13 12 47 47 H 1.08993 * 110.37218 * 142.96862 * 19 5 4 48 48 H 1.09004 * 110.36281 * 265.18449 * 19 5 4 49 49 H 0.97003 * 119.99913 * 87.20296 * 22 20 19 50 50 H 0.97002 * 119.99919 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2087 5 7 3.2470 -1.5461 -0.7428 6 6 3.9948 -2.3777 -1.4949 7 8 4.9974 -2.8784 -1.0312 8 6 3.5852 -2.6854 -2.9122 9 1 2.4983 -2.6626 -2.9899 10 6 4.1872 -1.6411 -3.8564 11 6 3.8171 -1.9956 -5.2993 12 6 4.3216 -3.4045 -5.6196 13 7 3.7157 -4.3660 -4.6896 14 6 4.0686 -5.7446 -5.0537 15 6 5.5761 -5.8377 -5.2976 16 9 5.9139 -5.0798 -6.4240 17 9 6.2606 -5.3446 -4.1815 18 6 4.0964 -4.0743 -3.3017 19 6 3.4674 -1.2455 0.6836 20 6 2.0829 -0.7948 1.2124 21 1 1.4515 -1.6547 1.4366 22 7 2.2251 0.0698 2.3864 23 6 2.1938 -0.4721 3.6436 24 1 2.0638 -1.5367 3.7697 25 6 2.3291 0.3472 4.7560 26 7 2.2985 -0.1735 5.9644 27 14 2.5533 2.1889 4.5379 28 1 1.2241 2.8508 4.5210 29 1 3.3595 2.7261 5.6634 30 1 3.2545 2.4538 3.2561 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3633 0.5029 0.8963 33 1 -0.3634 0.5247 -0.8836 34 1 1.3140 -1.4753 -1.5782 35 1 2.3711 -0.0991 -1.9992 36 1 3.7915 -0.6559 -3.6098 37 1 5.2720 -1.6361 -3.7500 38 1 4.2790 -1.2803 -5.9798 39 1 2.7338 -1.9617 -5.4160 40 1 5.4062 -3.4340 -5.5168 41 1 4.0463 -3.6650 -6.6417 42 1 3.7896 -6.4173 -4.2426 43 1 3.5355 -6.0286 -5.9610 44 1 5.8538 -6.8786 -5.4635 45 1 5.1822 -4.1006 -3.2098 46 1 3.6578 -4.8214 -2.6402 47 1 3.8032 -2.1378 1.2119 48 1 4.1970 -0.4432 0.7938 49 1 2.3415 1.0262 2.2731 50 1 2.3927 0.3990 6.7418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082710308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:45 Heat of formation + Delta-G solvation = -114.312396 kcal Electronic energy + Delta-G solvation = -31957.790140 eV Core-core repulsion = 27462.901446 eV Total energy + Delta-G solvation = -4494.888694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.52131 -47.39815 -40.38172 -38.84374 -37.46426 -34.45654 -34.11657 -32.39040 -31.34378 -30.99562 -29.44084 -28.03765 -26.25480 -24.76784 -24.41031 -23.18336 -22.56578 -21.37795 -20.44302 -20.06822 -19.03332 -18.02494 -17.77721 -17.57680 -17.05908 -16.67728 -16.22883 -15.77560 -15.19411 -14.96500 -14.78476 -14.38097 -14.18911 -14.07181 -13.96093 -13.62517 -13.59184 -13.36208 -13.26300 -13.20805 -12.90389 -12.70274 -12.59163 -12.50398 -12.22017 -12.06604 -11.99740 -11.77047 -11.41694 -11.31748 -11.19040 -11.10035 -10.93746 -10.80763 -10.68296 -10.64621 -10.39143 -10.00751 -9.65392 -9.53326 -9.03272 -8.58304 -8.37975 -7.38206 -5.83313 -3.21211 2.75476 3.03071 3.32736 3.33393 3.35553 3.42069 3.57858 3.88282 4.08035 4.27693 4.44491 4.52900 4.56492 4.66792 4.71157 4.82388 4.87228 4.98305 5.03694 5.13873 5.19090 5.21462 5.30807 5.37331 5.43451 5.49828 5.54782 5.55238 5.63353 5.69318 5.72411 5.75543 5.78358 5.82093 5.91605 6.06739 6.09131 6.13105 6.29697 6.42388 6.47410 6.53388 6.57807 6.64688 6.77596 7.75581 7.91084 8.34316 8.35901 9.11636 9.83555 10.01479 11.34434 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.002376 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.662417 B =11780.825989 C =12335.254269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.109 3.891 5 N -0.613 5.613 6 C 0.530 3.470 7 O -0.542 6.542 8 C -0.097 4.097 9 H 0.097 0.903 10 C -0.110 4.110 11 C -0.114 4.114 12 C 0.041 3.959 13 N -0.530 5.530 14 C 0.010 3.990 15 C 0.221 3.779 16 F -0.203 7.203 17 F -0.196 7.196 18 C 0.053 3.947 19 C 0.081 3.919 20 C 0.183 3.817 21 H 0.077 0.923 22 N -0.734 5.734 23 C -0.251 4.251 24 H 0.092 0.908 25 C 0.009 3.991 26 N -0.929 5.929 27 Si 0.884 3.116 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.364 0.636 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -8.087 -28.700 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.015 4.015 5 N -0.347 5.347 6 C 0.317 3.683 7 O -0.420 6.420 8 C -0.119 4.119 9 H 0.115 0.885 10 C -0.148 4.148 11 C -0.151 4.151 12 C -0.087 4.087 13 N -0.253 5.253 14 C -0.119 4.119 15 C 0.165 3.835 16 F -0.184 7.184 17 F -0.178 7.178 18 C -0.075 4.075 19 C -0.044 4.044 20 C 0.071 3.929 21 H 0.095 0.905 22 N -0.375 5.375 23 C -0.381 4.381 24 H 0.110 0.890 25 C -0.187 4.187 26 N -0.576 5.576 27 Si 0.714 3.286 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.197 0.803 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.358 -8.460 -28.271 29.512 hybrid contribution 1.184 1.366 0.083 1.810 sum 1.543 -7.094 -28.188 29.108 Atomic orbital electron populations 1.21675 0.93684 1.01993 1.01909 1.22546 0.96650 0.99719 0.94911 0.90042 1.22109 0.87661 0.94519 0.97198 1.48521 1.29729 1.44167 1.12292 1.20148 0.82856 0.78214 0.87047 1.90704 1.25294 1.52256 1.73716 1.21228 1.02471 0.96373 0.91779 0.88528 1.21514 1.01236 0.97859 0.94203 1.21589 1.02027 0.95664 0.95869 1.22532 0.97939 0.92105 0.96080 1.61992 1.58989 1.00975 1.03319 1.23429 0.90315 0.93065 1.05119 1.22937 0.94361 0.93749 0.72457 1.92960 1.93870 1.78830 1.52788 1.92966 1.82041 1.89702 1.53066 1.22286 1.01692 0.95571 0.87912 1.23329 1.01172 1.01197 0.78669 1.21347 0.92273 0.93557 0.85732 0.90528 1.42632 1.87882 1.05029 1.01909 1.19077 1.43069 0.94776 0.81166 0.89005 1.24681 1.01479 0.97496 0.95058 1.69699 1.56360 1.34514 0.97022 0.86566 0.77902 0.87038 0.77103 1.20956 1.21657 1.20279 0.92530 0.91432 0.93115 0.91346 0.91898 0.91132 0.91450 0.90993 0.90870 0.93020 0.90222 0.87537 0.87356 0.87260 0.90668 0.90367 0.90737 0.91769 0.80286 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.15 37.16 0.34 -1.31 16 2 C -0.12 -1.64 3.19 -88.79 -0.28 -1.92 16 3 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 4 C 0.11 1.31 5.89 -3.06 -0.02 1.29 16 5 N -0.61 -9.39 3.33 -170.52 -0.57 -9.96 16 6 C 0.53 8.31 6.92 -10.98 -0.08 8.23 16 7 O -0.54 -10.70 16.43 5.56 0.09 -10.61 16 8 C -0.10 -1.12 2.20 -91.69 -0.20 -1.32 16 9 H 0.10 1.01 7.15 -51.93 -0.37 0.64 16 10 C -0.11 -1.12 5.27 -26.61 -0.14 -1.26 16 11 C -0.11 -0.92 6.09 -26.65 -0.16 -1.09 16 12 C 0.04 0.35 3.97 -3.83 -0.02 0.34 16 13 N -0.53 -4.70 4.86 -234.68 -1.14 -5.84 16 14 C 0.01 0.06 6.00 -3.83 -0.02 0.04 16 15 C 0.22 1.52 5.14 37.16 0.19 1.71 16 16 F -0.20 -1.71 13.94 2.25 0.03 -1.68 16 17 F -0.20 -2.11 13.91 2.25 0.03 -2.07 16 18 C 0.05 0.60 3.89 -3.84 -0.01 0.59 16 19 C 0.08 1.50 6.58 -2.53 -0.02 1.48 16 20 C 0.18 3.33 3.17 -65.79 -0.21 3.12 16 21 H 0.08 1.46 8.00 -51.92 -0.42 1.04 16 22 N -0.73 -16.47 5.05 -51.35 -0.26 -16.73 16 23 C -0.25 -6.86 10.44 -15.06 -0.16 -7.01 16 24 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 25 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 26 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 27 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 31 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 7.32 -51.93 -0.38 0.33 16 35 H 0.06 0.65 7.46 -51.93 -0.39 0.26 16 36 H 0.07 0.67 7.46 -51.93 -0.39 0.28 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.05 0.53 5.72 -51.93 -0.30 0.23 16 41 H 0.08 0.60 7.82 -51.93 -0.41 0.20 16 42 H 0.11 0.55 7.87 -51.93 -0.41 0.14 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 1.02 5.22 -51.93 -0.27 0.75 16 46 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 47 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.36 8.01 5.62 -40.82 -0.23 7.78 16 50 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -33.50 386.65 -9.00 -42.50 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.20 Total: 6.63 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.88 Total: 3.05 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -1.19 Total: -60.49 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.06 Total: -3.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.50 -9.00 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082710308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.809 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds