Wall clock time and date at job start Wed Apr 1 2020 03:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.64153 * 2 1 4 4 C 1.54326 * 110.71916 * 236.86187 * 2 1 3 5 5 N 1.47021 * 107.27106 * 219.26620 * 4 2 1 6 6 C 1.34778 * 125.65021 * 178.90285 * 5 4 2 7 7 O 1.21277 * 120.00045 * 174.75144 * 6 5 4 8 8 C 1.50702 * 119.99810 * 354.75464 * 6 5 4 9 9 H 1.08999 * 109.50455 * 328.13538 * 8 6 5 10 10 C 1.53119 * 109.50216 * 88.20888 * 8 6 5 11 11 C 1.53120 * 109.15758 * 177.55362 * 10 8 6 12 12 C 1.53037 * 109.31174 * 302.40580 * 11 10 8 13 13 N 1.46846 * 109.52374 * 59.15822 * 12 11 10 14 14 C 1.46895 * 111.00285 * 174.16020 * 13 12 11 15 15 C 1.52995 * 109.47132 * 48.15688 * 14 13 12 16 16 F 1.39902 * 109.46862 * 294.03091 * 15 14 13 17 17 F 1.39901 * 109.47461 * 54.02898 * 15 14 13 18 18 C 1.46845 * 111.19780 * 298.26197 * 13 12 11 19 19 C 1.47428 * 108.70405 * 358.93944 * 5 4 2 20 20 C 1.54907 * 104.83189 * 24.12573 * 19 5 4 21 21 H 1.09009 * 111.00102 * 81.06658 * 20 19 5 22 22 N 1.46496 * 111.00763 * 204.91722 * 20 19 5 23 23 C 1.36939 * 119.99913 * 267.20033 * 22 20 19 24 24 H 1.07996 * 120.00375 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99743 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99799 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99944 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47246 * 89.99974 * 27 25 23 29 29 H 1.48500 * 109.46714 * 209.99843 * 27 25 23 30 30 H 1.48493 * 109.47171 * 329.99795 * 27 25 23 31 31 H 1.08999 * 109.47238 * 179.29618 * 1 2 3 32 32 H 1.09004 * 109.46857 * 299.29669 * 1 2 3 33 33 H 1.08999 * 109.47350 * 59.29520 * 1 2 3 34 34 H 1.08999 * 109.88137 * 338.68021 * 4 2 1 35 35 H 1.09000 * 109.88591 * 99.84505 * 4 2 1 36 36 H 1.08997 * 109.52659 * 297.49745 * 10 8 6 37 37 H 1.09000 * 109.52278 * 57.69206 * 10 8 6 38 38 H 1.09000 * 109.50944 * 182.44518 * 11 10 8 39 39 H 1.09008 * 109.50420 * 62.36596 * 11 10 8 40 40 H 1.08992 * 109.46390 * 299.14266 * 12 11 10 41 41 H 1.09006 * 109.45160 * 179.16571 * 12 11 10 42 42 H 1.09000 * 109.47073 * 168.15448 * 14 13 12 43 43 H 1.09004 * 109.47059 * 288.15687 * 14 13 12 44 44 H 1.08998 * 109.47575 * 174.03542 * 15 14 13 45 45 H 1.09004 * 109.45746 * 301.72153 * 18 13 12 46 46 H 1.09005 * 109.45781 * 181.75472 * 18 13 12 47 47 H 1.08993 * 110.37218 * 142.96862 * 19 5 4 48 48 H 1.09004 * 110.36281 * 265.18449 * 19 5 4 49 49 H 0.97003 * 119.99913 * 87.20296 * 22 20 19 50 50 H 0.97002 * 119.99919 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2087 5 7 3.2470 -1.5461 -0.7428 6 6 3.9948 -2.3777 -1.4949 7 8 4.9974 -2.8784 -1.0312 8 6 3.5852 -2.6854 -2.9122 9 1 2.4983 -2.6626 -2.9899 10 6 4.1872 -1.6411 -3.8564 11 6 3.8171 -1.9956 -5.2993 12 6 4.3216 -3.4045 -5.6196 13 7 3.7157 -4.3660 -4.6896 14 6 4.0686 -5.7446 -5.0537 15 6 5.5761 -5.8377 -5.2976 16 9 5.9139 -5.0798 -6.4240 17 9 6.2606 -5.3446 -4.1815 18 6 4.0964 -4.0743 -3.3017 19 6 3.4674 -1.2455 0.6836 20 6 2.0829 -0.7948 1.2124 21 1 1.4515 -1.6547 1.4366 22 7 2.2251 0.0698 2.3864 23 6 2.1938 -0.4721 3.6436 24 1 2.0638 -1.5367 3.7697 25 6 2.3291 0.3472 4.7560 26 7 2.2985 -0.1735 5.9644 27 14 2.5533 2.1889 4.5379 28 1 1.2241 2.8508 4.5210 29 1 3.3595 2.7261 5.6634 30 1 3.2545 2.4538 3.2561 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3633 0.5029 0.8963 33 1 -0.3634 0.5247 -0.8836 34 1 1.3140 -1.4753 -1.5782 35 1 2.3711 -0.0991 -1.9992 36 1 3.7915 -0.6559 -3.6098 37 1 5.2720 -1.6361 -3.7500 38 1 4.2790 -1.2803 -5.9798 39 1 2.7338 -1.9617 -5.4160 40 1 5.4062 -3.4340 -5.5168 41 1 4.0463 -3.6650 -6.6417 42 1 3.7896 -6.4173 -4.2426 43 1 3.5355 -6.0286 -5.9610 44 1 5.8538 -6.8786 -5.4635 45 1 5.1822 -4.1006 -3.2098 46 1 3.6578 -4.8214 -2.6402 47 1 3.8032 -2.1378 1.2119 48 1 4.1970 -0.4432 0.7938 49 1 2.3415 1.0262 2.2731 50 1 2.3927 0.3990 6.7418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082710308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:44 Heat of formation + Delta-G solvation = -138.283687 kcal Electronic energy + Delta-G solvation = -31958.829613 eV Core-core repulsion = 27462.901446 eV Total energy + Delta-G solvation = -4495.928167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.13820 -48.04084 -41.53286 -39.83419 -38.70156 -36.08340 -35.04133 -33.86754 -32.81742 -32.14275 -30.15698 -29.47295 -27.30369 -26.04022 -25.33006 -24.49764 -23.26669 -22.69601 -21.64127 -21.12281 -20.22047 -19.51256 -18.60330 -18.40483 -18.16014 -17.57910 -17.40050 -16.70321 -16.39412 -16.05379 -15.87631 -15.72586 -15.32941 -15.09680 -14.85600 -14.66823 -14.57479 -14.55469 -14.42345 -14.29962 -14.14621 -13.77305 -13.68030 -13.47337 -13.19467 -13.10466 -12.96967 -12.92105 -12.79577 -12.56658 -12.32160 -12.18749 -12.09850 -11.96980 -11.86808 -11.78412 -11.67030 -11.44786 -11.37090 -11.03488 -10.75387 -9.72095 -9.36168 -9.28341 -8.04773 -5.40662 1.37387 1.41650 1.48178 1.53325 1.88274 2.46771 2.66620 3.02396 3.24034 3.37513 3.43798 3.46603 3.58314 3.65770 3.77009 3.80539 3.87404 3.96219 4.08143 4.15857 4.19467 4.29393 4.33996 4.40888 4.50048 4.54728 4.59667 4.66553 4.70361 4.70936 4.77948 4.87445 4.89450 4.93300 4.96267 5.04891 5.07522 5.11120 5.17252 5.23667 5.33907 5.37988 5.51663 5.74018 5.87866 5.95488 6.18755 6.53606 7.03425 7.10250 7.76881 7.96961 9.16486 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.002376 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.662417 B =11780.825989 C =12335.254269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 H 0.088 0.912 4 C 0.109 3.891 5 N -0.612 5.612 6 C 0.524 3.476 7 O -0.594 6.594 8 C -0.085 4.085 9 H 0.120 0.880 10 C -0.107 4.107 11 C -0.107 4.107 12 C 0.040 3.960 13 N -0.527 5.527 14 C 0.008 3.992 15 C 0.210 3.790 16 F -0.212 7.212 17 F -0.223 7.223 18 C 0.057 3.943 19 C 0.089 3.911 20 C 0.176 3.824 21 H 0.064 0.936 22 N -0.734 5.734 23 C -0.236 4.236 24 H 0.054 0.946 25 C -0.061 4.061 26 N -0.983 5.983 27 Si 0.957 3.043 28 H -0.271 1.271 29 H -0.300 1.300 30 H -0.251 1.251 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.370 0.630 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 -6.729 -32.881 33.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 H 0.106 0.894 4 C -0.013 4.013 5 N -0.345 5.345 6 C 0.314 3.686 7 O -0.475 6.475 8 C -0.106 4.106 9 H 0.138 0.862 10 C -0.145 4.145 11 C -0.145 4.145 12 C -0.087 4.087 13 N -0.249 5.249 14 C -0.121 4.121 15 C 0.155 3.845 16 F -0.194 7.194 17 F -0.205 7.205 18 C -0.071 4.071 19 C -0.037 4.037 20 C 0.066 3.934 21 H 0.082 0.918 22 N -0.376 5.376 23 C -0.367 4.367 24 H 0.072 0.928 25 C -0.253 4.253 26 N -0.632 5.632 27 Si 0.784 3.216 28 H -0.197 1.197 29 H -0.227 1.227 30 H -0.176 1.176 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.164 0.836 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.204 0.796 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.464 -7.102 -32.546 33.344 hybrid contribution 1.768 0.780 1.347 2.355 sum 0.304 -6.322 -31.199 31.835 Atomic orbital electron populations 1.21663 0.91975 1.02604 1.02619 1.22492 0.97957 0.99442 0.92696 0.89365 1.22376 0.86829 0.95155 0.96909 1.48577 1.30732 1.44453 1.10715 1.21016 0.81978 0.77151 0.88478 1.90681 1.27677 1.54072 1.75021 1.21227 1.03685 0.96971 0.88755 0.86194 1.21525 0.99676 0.98000 0.95322 1.21590 1.03042 0.95516 0.94340 1.22567 0.96756 0.92628 0.96758 1.62030 1.58691 1.02432 1.01772 1.23628 0.90006 0.91750 1.06717 1.23414 0.94662 0.95125 0.71252 1.92936 1.93987 1.79340 1.53116 1.92923 1.82711 1.90203 1.54627 1.22127 0.99903 0.95374 0.89701 1.22928 1.00752 0.99087 0.80973 1.21489 0.92098 0.93625 0.86228 0.91841 1.42534 1.88013 1.05702 1.01386 1.18994 1.41048 0.93228 0.83414 0.92801 1.25539 1.02216 1.02976 0.94570 1.69893 1.58799 1.36459 0.98083 0.85389 0.78286 0.80307 0.77647 1.19700 1.22663 1.17573 0.92135 0.93492 0.89522 0.88546 0.88595 0.89734 0.93910 0.89562 0.89270 0.95128 0.88587 0.86616 0.84596 0.83598 0.93464 0.91111 0.94327 0.93079 0.79606 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.15 71.98 0.66 -2.08 16 2 C -0.11 -2.63 3.19 -9.61 -0.03 -2.66 16 3 H 0.09 2.13 8.00 -2.39 -0.02 2.11 16 4 C 0.11 2.21 5.89 86.73 0.51 2.72 16 5 N -0.61 -18.15 3.33 -811.79 -2.70 -20.85 16 6 C 0.52 16.36 6.92 87.66 0.61 16.97 16 7 O -0.59 -24.58 16.43 -3.02 -0.05 -24.63 16 8 C -0.08 -1.82 2.20 -11.49 -0.03 -1.84 16 9 H 0.12 2.03 7.15 -2.39 -0.02 2.02 16 10 C -0.11 -1.93 5.27 30.67 0.16 -1.77 16 11 C -0.11 -1.38 6.09 30.65 0.19 -1.20 16 12 C 0.04 0.60 3.97 86.33 0.34 0.94 16 13 N -0.53 -8.18 4.86 -896.39 -4.35 -12.53 16 14 C 0.01 0.08 6.00 86.30 0.52 0.60 16 15 C 0.21 2.62 5.14 71.98 0.37 2.99 16 16 F -0.21 -3.29 13.94 44.97 0.63 -2.67 16 17 F -0.22 -4.90 13.91 44.97 0.63 -4.27 16 18 C 0.06 1.27 3.89 86.32 0.34 1.60 16 19 C 0.09 3.36 6.58 86.85 0.57 3.93 16 20 C 0.18 6.39 3.17 46.38 0.15 6.54 16 21 H 0.06 2.47 8.00 -2.38 -0.02 2.45 16 22 N -0.73 -33.04 5.05 -316.38 -1.60 -34.64 16 23 C -0.24 -13.32 10.44 84.03 0.88 -12.44 16 24 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 25 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 26 N -0.98 -63.14 13.97 21.65 0.30 -62.84 16 27 Si 0.96 44.77 27.74 68.60 1.90 46.67 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 30 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 31 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.50 7.32 -2.39 -0.02 1.48 16 35 H 0.10 1.43 7.46 -2.39 -0.02 1.41 16 36 H 0.08 1.28 7.46 -2.39 -0.02 1.26 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.03 0.60 5.72 -2.39 -0.01 0.59 16 41 H 0.10 1.14 7.82 -2.38 -0.02 1.12 16 42 H 0.12 0.96 7.87 -2.39 -0.02 0.94 16 43 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 1.33 5.22 -2.38 -0.01 1.32 16 46 H 0.07 1.63 7.96 -2.38 -0.02 1.61 16 47 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 48 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 49 H 0.37 15.73 5.62 -92.71 -0.52 15.21 16 50 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -79.15 386.65 0.81 -78.34 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.36 Total: 26.25 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.70 Total: 11.17 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -8.35 Total: -130.86 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 1.25 Total: -6.94 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -79.15 0.81 -78.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082710308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.944 kcal (2) G-P(sol) polarization free energy of solvation -79.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds