Wall clock time and date at job start Wed Apr 1 2020 04:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.29108 * 126.00670 * 2 1 4 4 N 1.29017 * 110.25393 * 179.97438 * 3 2 1 5 5 C 1.32905 * 108.64096 * 359.97438 * 4 3 2 6 6 C 1.34396 * 126.00670 * 180.02562 * 2 1 3 7 7 C 1.50538 * 129.25235 * 0.22989 * 6 2 1 8 8 C 1.53437 * 108.32138 * 163.49527 * 7 6 2 9 9 H 1.08998 * 109.45282 * 289.68907 * 8 7 6 10 10 C 1.50701 * 109.45602 * 169.72302 * 8 7 6 11 11 O 1.21281 * 120.00253 * 359.97438 * 10 8 7 12 12 N 1.34781 * 119.99888 * 179.97438 * 10 8 7 13 13 C 1.47285 * 136.54064 * 359.63105 * 12 10 8 14 14 C 1.54370 * 87.49800 * 151.46411 * 13 12 10 15 15 H 1.08997 * 114.92665 * 141.75148 * 14 13 12 16 16 C 1.53069 * 112.44759 * 274.14875 * 14 13 12 17 17 C 1.53144 * 109.21213 * 142.78206 * 16 14 13 18 18 N 1.46542 * 108.25307 * 301.59019 * 17 16 14 19 19 C 1.36941 * 119.73712 * 236.40102 * 18 17 16 20 20 H 1.08000 * 119.99903 * 26.53804 * 19 18 17 21 21 C 1.38810 * 119.99485 * 206.53639 * 19 18 17 22 22 N 1.31617 * 120.00162 * 12.84664 * 21 19 18 23 23 Si 1.86803 * 119.99850 * 192.84299 * 21 19 18 24 24 H 1.48496 * 109.47017 * 90.00283 * 23 21 19 25 25 H 1.48500 * 109.47088 * 210.00254 * 23 21 19 26 26 H 1.48499 * 109.47088 * 330.00251 * 23 21 19 27 27 C 1.43227 * 120.57499 * 55.56140 * 18 17 16 28 28 C 1.46465 * 136.54498 * 179.97438 * 12 10 8 29 29 H 1.09002 * 111.43597 * 96.34493 * 28 12 10 30 30 C 1.53101 * 109.55106 * 49.71092 * 8 7 6 31 31 C 1.50596 * 129.16226 * 180.19857 * 5 4 3 32 32 H 1.08995 * 109.47312 * 90.02513 * 1 2 3 33 33 H 1.08998 * 109.46766 * 210.02903 * 1 2 3 34 34 H 1.08998 * 109.46783 * 330.02303 * 1 2 3 35 35 H 1.09005 * 109.69428 * 283.20048 * 7 6 2 36 36 H 1.08998 * 109.69612 * 43.78056 * 7 6 2 37 37 H 1.09000 * 113.52519 * 266.08528 * 13 12 10 38 38 H 1.09002 * 113.53529 * 36.71646 * 13 12 10 39 39 H 1.08994 * 109.51630 * 262.70604 * 16 14 13 40 40 H 1.09007 * 109.51115 * 22.81088 * 16 14 13 41 41 H 1.09002 * 109.70764 * 61.28360 * 17 16 14 42 42 H 1.09000 * 109.70318 * 181.90161 * 17 16 14 43 43 H 0.96998 * 119.99885 * 179.97438 * 22 21 19 44 44 H 1.09001 * 108.84474 * 199.44908 * 27 18 17 45 45 H 1.09002 * 107.23596 * 82.07483 * 27 18 17 46 46 H 1.09005 * 109.45483 * 49.96234 * 30 8 7 47 47 H 1.09002 * 109.45032 * 169.88932 * 30 8 7 48 48 H 1.08995 * 109.69021 * 283.15391 * 31 5 4 49 49 H 1.08997 * 109.69062 * 43.73073 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6941 0.0005 5 6 3.5328 -0.6332 0.0015 6 6 2.2552 -1.0872 -0.0005 7 6 1.8721 -2.5430 -0.0058 8 6 3.1013 -3.3637 -0.4179 9 1 3.3140 -3.1938 -1.4734 10 6 2.8267 -4.8279 -0.1904 11 8 1.7563 -5.1818 0.2568 12 7 3.7706 -5.7441 -0.4839 13 6 5.1397 -5.7325 -1.0267 14 6 5.3976 -7.0237 -0.2211 15 1 6.0160 -7.7651 -0.7271 16 6 5.8289 -6.7375 1.2194 17 6 5.2077 -7.7842 2.1489 18 7 3.7510 -7.7220 2.0016 19 6 2.9657 -7.5042 3.1022 20 1 3.3640 -6.9710 3.9528 21 6 1.6578 -7.9687 3.1243 22 7 1.2486 -8.8266 2.2139 23 14 0.4786 -7.3764 4.4465 24 1 -0.2250 -6.1577 3.9722 25 1 -0.5155 -8.4409 4.7360 26 1 1.2389 -7.0598 5.6821 27 6 3.1420 -7.8691 0.7137 28 6 3.8960 -7.2016 -0.4127 29 1 3.6680 -7.6684 -1.3710 30 6 4.3083 -2.9350 0.4209 31 6 4.7469 -1.5242 0.0064 32 1 -0.3634 -0.0005 -1.0276 33 1 -0.3633 -0.8897 0.5143 34 1 -0.3633 0.8902 0.5135 35 1 1.5488 -2.8414 0.9915 36 1 1.0644 -2.7078 -0.7189 37 1 5.1809 -5.8778 -2.1062 38 1 5.7336 -4.8822 -0.6914 39 1 6.9154 -6.7863 1.2908 40 1 5.4892 -5.7435 1.5105 41 1 5.5629 -8.7773 1.8736 42 1 5.4823 -7.5681 3.1813 43 1 0.3348 -9.1515 2.2296 44 1 2.1330 -7.4587 0.7524 45 1 3.0763 -8.9374 0.5076 46 1 4.0356 -2.9357 1.4763 47 1 5.1297 -3.6329 0.2581 48 1 5.1848 -1.5537 -0.9912 49 1 5.4790 -1.1433 0.7184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084611612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:32 Heat of formation + Delta-G solvation = 131.642959 kcal Electronic energy + Delta-G solvation = -32202.824096 eV Core-core repulsion = 28169.290012 eV Total energy + Delta-G solvation = -4033.534083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.48590 -40.69716 -38.44907 -36.34606 -35.38964 -34.97687 -32.19912 -30.78831 -30.65383 -30.18740 -28.72587 -27.96529 -26.96425 -24.68581 -23.92900 -23.28099 -22.66540 -21.50846 -21.07061 -20.25545 -19.29780 -17.86567 -17.38550 -17.04467 -16.64352 -15.97606 -15.79500 -15.40086 -14.78933 -14.57784 -14.16171 -13.99030 -13.93429 -13.75101 -13.46767 -13.37231 -13.28109 -13.03971 -13.00917 -12.65989 -12.47060 -12.20440 -12.02784 -11.92630 -11.61526 -11.48600 -11.29962 -11.08969 -10.92931 -10.71594 -10.69959 -10.51299 -10.47433 -10.18927 -10.05592 -9.91825 -9.80562 -9.51953 -8.98362 -8.87744 -8.30952 -8.15160 -6.56986 -5.67595 -3.12755 1.46794 2.20148 2.45812 3.11311 3.20768 3.44682 3.50342 3.51371 4.03311 4.30170 4.47383 4.57066 4.64397 4.66167 4.71309 4.73748 4.78992 4.99475 5.02594 5.12585 5.17114 5.32049 5.33123 5.42333 5.45810 5.51235 5.54752 5.59374 5.71810 5.75788 5.82319 5.88039 5.91183 5.95302 6.10578 6.12950 6.16402 6.20864 6.30266 6.39840 6.45887 6.51356 6.58981 6.77255 6.98886 7.51861 7.77152 7.92741 8.30599 8.41991 8.58522 8.69927 9.37942 10.00898 10.46122 11.39486 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.004090 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.042251 B = 6844.475185 C = 8353.559076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.285 5.285 3 N -0.103 5.103 4 N -0.263 5.263 5 C -0.022 4.022 6 C -0.009 4.009 7 C -0.027 4.027 8 C -0.092 4.092 9 H 0.096 0.904 10 C 0.546 3.454 11 O -0.516 6.516 12 N -0.630 5.630 13 C 0.091 3.909 14 C -0.114 4.114 15 H 0.090 0.910 16 C -0.115 4.115 17 C 0.147 3.853 18 N -0.580 5.580 19 C -0.255 4.255 20 H 0.061 0.939 21 C 0.014 3.986 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.167 3.833 28 C 0.117 3.883 29 H 0.073 0.927 30 C -0.115 4.115 31 C -0.028 4.028 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.101 0.899 45 H 0.025 0.975 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 11.444 -9.520 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.080 5.080 4 N -0.128 5.128 5 C -0.162 4.162 6 C -0.143 4.143 7 C -0.067 4.067 8 C -0.114 4.114 9 H 0.114 0.886 10 C 0.334 3.666 11 O -0.391 6.391 12 N -0.366 5.366 13 C -0.032 4.032 14 C -0.133 4.133 15 H 0.108 0.892 16 C -0.154 4.154 17 C 0.020 3.980 18 N -0.302 5.302 19 C -0.384 4.384 20 H 0.079 0.921 21 C -0.185 4.185 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.040 3.960 28 C 0.013 3.987 29 H 0.090 0.910 30 C -0.153 4.153 31 C -0.067 4.067 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.043 0.957 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.975 12.924 -9.224 16.639 hybrid contribution -1.032 -0.661 0.387 1.285 sum 3.943 12.263 -8.837 15.621 Atomic orbital electron populations 1.22302 0.72706 1.06165 1.05066 1.46806 1.09198 1.04602 1.47040 1.78545 0.96129 1.11345 1.22031 1.74758 1.09657 1.12006 1.16371 1.21684 0.95056 0.91279 1.08230 1.21895 0.91232 0.92329 1.08873 1.19962 0.97743 0.84352 1.04638 1.21217 0.96072 0.92255 1.01866 0.88608 1.19624 0.82814 0.85974 0.78224 1.90794 1.23577 1.80953 1.43738 1.49435 1.15346 1.08558 1.63290 1.23480 0.82927 0.98722 0.98077 1.22787 0.96873 0.96662 0.97015 0.89215 1.21812 0.98591 1.01418 0.93601 1.20745 0.85801 0.94719 0.96746 1.42837 0.99872 1.84055 1.03396 1.19085 0.94271 1.29568 0.95519 0.92097 1.24957 0.98750 0.96820 0.97950 1.70010 1.16808 1.31580 1.36266 0.86328 0.81227 0.78062 0.81328 1.21423 1.21828 1.20641 1.19728 0.97506 0.96512 0.82219 1.22685 0.94464 0.80654 1.00854 0.90960 1.21753 0.97160 0.95713 1.00680 1.19950 0.92490 0.91439 1.02857 0.88991 0.87990 0.87972 0.88126 0.89606 0.90446 0.90636 0.92627 0.92007 0.96216 0.92600 0.93819 0.88087 0.95738 0.90452 0.89512 0.89904 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.27 59.85 0.67 1.26 16 2 N -0.28 -3.49 3.73 -64.00 -0.24 -3.73 16 3 N -0.10 -1.51 13.19 60.35 0.80 -0.72 16 4 N -0.26 -4.08 12.40 33.16 0.41 -3.67 16 5 C -0.02 -0.30 7.11 -83.13 -0.59 -0.89 16 6 C -0.01 -0.12 6.76 -82.50 -0.56 -0.68 16 7 C -0.03 -0.35 4.68 -27.74 -0.13 -0.48 16 8 C -0.09 -1.18 2.39 -91.49 -0.22 -1.40 16 9 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 10 C 0.55 9.53 7.34 -10.98 -0.08 9.45 16 11 O -0.52 -11.67 15.09 5.56 0.08 -11.59 16 12 N -0.63 -10.20 3.27 -187.54 -0.61 -10.81 16 13 C 0.09 1.05 7.37 -11.39 -0.08 0.97 16 14 C -0.11 -1.59 4.52 -90.16 -0.41 -1.99 16 15 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 16 C -0.11 -1.75 5.75 -26.62 -0.15 -1.91 16 17 C 0.15 2.89 6.46 -3.94 -0.03 2.87 16 18 N -0.58 -14.26 2.98 -176.81 -0.53 -14.79 16 19 C -0.25 -7.08 9.49 -15.06 -0.14 -7.22 16 20 H 0.06 1.68 7.84 -52.49 -0.41 1.27 16 21 C 0.01 0.40 4.95 -17.43 -0.09 0.32 16 22 N -0.90 -26.79 10.95 55.49 0.61 -26.18 16 23 Si 0.90 22.72 29.57 -169.99 -5.03 17.70 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.17 4.00 4.47 -6.73 -0.03 3.97 16 28 C 0.12 2.10 4.07 -77.71 -0.32 1.78 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 C -0.12 -1.33 5.16 -26.45 -0.14 -1.47 16 31 C -0.03 -0.30 6.30 -27.70 -0.17 -0.47 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.65 7.96 -51.93 -0.41 0.24 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.48 7.78 -51.93 -0.40 1.08 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.73 5.80 -51.93 -0.30 0.43 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.02 7.76 -51.92 -0.40 0.62 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.10 7.88 -51.93 -0.41 0.69 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.10 2.86 4.99 -51.93 -0.26 2.60 16 45 H 0.02 0.65 7.91 -51.93 -0.41 0.24 16 46 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 47 H 0.09 0.92 5.07 -51.93 -0.26 0.66 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -36.07 379.54 -8.73 -44.80 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.48 Total: -0.83 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.46 Total: 4.10 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.44 Total: -59.90 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.07 -8.73 -44.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084611612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.443 kcal (2) G-P(sol) polarization free energy of solvation -36.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds