Wall clock time and date at job start Wed Apr 1 2020 03:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.31808 * 2 1 4 4 C 1.55018 * 110.35550 * 237.67789 * 2 1 3 5 5 C 1.54516 * 101.53639 * 204.76707 * 4 2 1 6 6 C 1.53699 * 103.64141 * 34.82113 * 5 4 2 7 7 N 1.47172 * 107.11515 * 338.45628 * 6 5 4 8 8 C 1.34773 * 125.66700 * 178.51377 * 7 6 5 9 9 O 1.21567 * 120.00450 * 179.97438 * 8 7 6 10 10 C 1.47739 * 119.99619 * 359.97438 * 8 7 6 11 11 N 1.33020 * 120.16183 * 0.54667 * 10 8 7 12 12 C 1.31734 * 120.00672 * 179.71693 * 11 10 8 13 13 C 1.38800 * 120.34046 * 0.55535 * 12 11 10 14 14 N 1.32030 * 120.33024 * 359.71674 * 13 12 11 15 15 C 1.32825 * 119.98296 * 0.02562 * 14 13 12 16 16 N 1.38270 * 120.17098 * 179.97438 * 15 14 13 17 17 C 1.52277 * 110.19985 * 276.40974 * 5 4 2 18 18 C 1.53309 * 109.41755 * 177.80921 * 17 5 4 19 19 N 1.46926 * 108.70930 * 53.50934 * 18 17 5 20 20 C 1.36939 * 120.56367 * 125.74526 * 19 18 17 21 21 H 1.07999 * 120.00072 * 334.54381 * 20 19 18 22 22 C 1.38819 * 119.99707 * 154.55119 * 20 19 18 23 23 N 1.31612 * 120.00347 * 339.84724 * 22 20 19 24 24 Si 1.86800 * 119.99613 * 159.85042 * 22 20 19 25 25 H 1.48497 * 109.47317 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.47389 * 299.99939 * 24 22 20 27 27 H 1.48506 * 109.47095 * 59.99572 * 24 22 20 28 28 C 1.46927 * 118.87249 * 306.01454 * 19 18 17 29 29 C 1.52273 * 110.20631 * 153.22074 * 5 4 2 30 30 H 1.08996 * 109.47332 * 299.25539 * 1 2 3 31 31 H 1.09005 * 109.46871 * 59.24969 * 1 2 3 32 32 H 1.08991 * 109.47272 * 179.24670 * 1 2 3 33 33 H 1.09000 * 111.01180 * 86.70445 * 4 2 1 34 34 H 1.09004 * 111.01315 * 322.83277 * 4 2 1 35 35 H 1.08996 * 109.90649 * 97.83354 * 6 5 4 36 36 H 1.09007 * 109.90763 * 219.08856 * 6 5 4 37 37 H 1.07999 * 119.82344 * 180.25447 * 12 11 10 38 38 H 1.07996 * 119.83199 * 179.70316 * 13 12 11 39 39 H 0.97000 * 119.99887 * 334.77870 * 16 15 14 40 40 H 0.97000 * 120.00018 * 154.77374 * 16 15 14 41 41 H 1.09001 * 109.47911 * 57.82947 * 17 5 4 42 42 H 1.08997 * 109.47899 * 297.79506 * 17 5 4 43 43 H 1.08995 * 109.60188 * 293.74029 * 18 17 5 44 44 H 1.08997 * 109.72585 * 173.34868 * 18 17 5 45 45 H 0.96999 * 120.00202 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.59923 * 173.74551 * 28 19 18 47 47 H 1.08991 * 109.60317 * 294.21797 * 28 19 18 48 48 H 1.08991 * 109.47989 * 302.18162 * 29 5 4 49 49 H 1.09005 * 109.47414 * 62.20775 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0693 -0.7771 -1.2282 5 6 3.4656 -1.2123 -0.7298 6 6 3.2490 -1.4784 0.7684 7 7 2.0429 -0.7369 1.1701 8 6 1.4978 -0.7317 2.4027 9 8 0.4958 -0.0790 2.6215 10 6 2.1179 -1.5193 3.4879 11 7 3.2205 -2.2260 3.2548 12 6 3.7741 -2.9227 4.2262 13 6 3.2064 -2.9337 5.4927 14 7 2.1091 -2.2414 5.7376 15 6 1.5430 -1.5303 4.7690 16 7 0.3935 -0.8043 5.0210 17 6 4.4713 -0.0875 -0.9353 18 6 5.8363 -0.5176 -0.3855 19 7 6.2054 -1.8033 -0.9934 20 6 7.4036 -1.9493 -1.6402 21 1 7.8937 -1.0882 -2.0700 22 6 7.9881 -3.2042 -1.7435 23 7 7.6343 -4.1651 -0.9167 24 14 9.2769 -3.5289 -3.0561 25 1 9.7420 -4.9356 -2.9560 26 1 8.6858 -3.2968 -4.3985 27 1 10.4281 -2.6120 -2.8571 28 6 5.2645 -2.9280 -0.9007 29 6 3.9056 -2.4840 -1.4425 30 1 -0.3634 0.5022 0.8965 31 1 -0.3633 0.5255 -0.8832 32 1 -0.3633 -1.0275 -0.0135 33 1 2.1504 -0.1254 -2.0982 34 1 1.4450 -1.6433 -1.4475 35 1 3.1029 -2.5451 0.9385 36 1 4.1092 -1.1238 1.3365 37 1 4.6716 -3.4921 4.0347 38 1 3.6644 -3.5115 6.2818 39 1 -0.2012 -1.0714 5.7393 40 1 0.1818 -0.0278 4.4796 41 1 4.1319 0.8043 -0.4085 42 1 4.5604 0.1305 -1.9995 43 1 5.7759 -0.6290 0.6970 44 1 6.5863 0.2331 -0.6345 45 1 8.0425 -5.0420 -0.9891 46 1 5.6361 -3.7652 -1.4916 47 1 5.1585 -3.2311 0.1408 48 1 3.1701 -3.2698 -1.2710 49 1 3.9888 -2.2910 -2.5120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086911080.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:13 Heat of formation + Delta-G solvation = 55.530650 kcal Electronic energy + Delta-G solvation = -32090.255839 eV Core-core repulsion = 28053.421278 eV Total energy + Delta-G solvation = -4036.834561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.37917 -40.19606 -38.44042 -36.15608 -35.35481 -33.84006 -33.07449 -31.76650 -30.87801 -29.88909 -29.66293 -27.22060 -26.01603 -25.11828 -24.19343 -23.69381 -22.58662 -21.87181 -20.76483 -19.56902 -18.33492 -18.28813 -17.62926 -16.88054 -16.75267 -16.24456 -15.69942 -15.53113 -14.94562 -14.82521 -14.53242 -14.19308 -13.98450 -13.85374 -13.68420 -13.30293 -13.22605 -12.97827 -12.71004 -12.52006 -12.08477 -11.87286 -11.73760 -11.71554 -11.59765 -11.42666 -11.23726 -11.06834 -10.84307 -10.68775 -10.61912 -10.36191 -10.18467 -10.16809 -9.90311 -9.79182 -9.49246 -9.31400 -9.06353 -8.57532 -8.40801 -8.12536 -6.65746 -5.76735 -3.14784 0.46809 1.18999 2.74108 2.89546 3.38063 3.39688 3.45900 3.47442 3.79357 4.05095 4.27832 4.44332 4.52246 4.77518 4.79405 5.01602 5.07276 5.15332 5.25579 5.32859 5.37410 5.40930 5.45349 5.62544 5.70672 5.81077 5.89755 6.01051 6.09634 6.14077 6.18442 6.19307 6.25817 6.29384 6.38018 6.56240 6.58207 6.64828 6.70352 6.80550 6.88134 6.90654 7.01648 7.16799 7.40431 7.45667 7.56168 7.70224 7.82146 7.93540 8.16377 8.46326 9.23934 9.88686 10.44356 11.31492 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.003622 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.643128 B = 7729.347709 C = 9349.667434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.076 0.924 4 C -0.124 4.124 5 C -0.061 4.061 6 C 0.127 3.873 7 N -0.588 5.588 8 C 0.598 3.402 9 O -0.553 6.553 10 C -0.039 4.039 11 N -0.363 5.363 12 C -0.012 4.012 13 C 0.127 3.873 14 N -0.508 5.508 15 C 0.404 3.596 16 N -0.826 5.826 17 C -0.119 4.119 18 C 0.145 3.855 19 N -0.589 5.589 20 C -0.251 4.251 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.900 5.900 24 Si 0.898 3.102 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.169 3.831 29 C -0.125 4.125 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.399 0.601 40 H 0.425 0.575 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.019 0.981 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.088 0.912 47 H 0.021 0.979 48 H 0.050 0.950 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.752 4.806 8.401 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.094 0.906 4 C -0.162 4.162 5 C -0.062 4.062 6 C 0.006 3.994 7 N -0.319 5.319 8 C 0.387 3.613 9 O -0.434 6.434 10 C -0.187 4.187 11 N -0.079 5.079 12 C -0.177 4.177 13 C -0.037 4.037 14 N -0.231 5.231 15 C 0.161 3.839 16 N -0.378 5.378 17 C -0.158 4.158 18 C 0.019 3.981 19 N -0.312 5.312 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.210 1.210 28 C 0.044 3.956 29 C -0.164 4.164 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.194 0.806 38 H 0.191 0.809 39 H 0.229 0.771 40 H 0.266 0.734 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.039 0.961 48 H 0.068 0.932 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.260 5.057 8.503 17.356 hybrid contribution 0.597 -0.242 -0.488 0.808 sum -13.664 4.815 8.016 16.557 Atomic orbital electron populations 1.22175 0.94177 1.02469 1.03275 1.22005 0.94724 0.95604 0.84555 0.90596 1.22982 0.96766 1.00040 0.96403 1.21058 0.93742 0.97601 0.93773 1.22333 0.86006 0.96627 0.94466 1.48458 1.28359 1.46859 1.08177 1.17103 0.82778 0.80563 0.80891 1.90442 1.25987 1.45591 1.81345 1.21445 0.98713 1.05621 0.92916 1.68510 1.05105 1.01012 1.33298 1.23645 1.02607 1.01256 0.90156 1.23846 0.89718 0.92504 0.97607 1.68221 1.11761 1.11541 1.31551 1.19042 0.87750 0.88937 0.88134 1.42717 1.21538 1.33144 1.40354 1.21917 0.96981 0.95646 1.01261 1.20929 0.92955 0.89423 0.94818 1.44015 1.16716 1.07021 1.63456 1.19148 0.97514 0.94005 1.27437 0.91782 1.24917 0.98275 0.97721 0.98662 1.70049 1.45402 1.03513 1.35464 0.86442 0.81477 0.76959 0.82355 1.21708 1.21161 1.21007 1.20742 0.85152 0.91461 0.98291 1.22014 1.00226 0.94376 0.99802 0.89678 0.92231 0.92860 0.90077 0.90813 0.90503 0.89832 0.80639 0.80912 0.77126 0.73410 0.93279 0.91963 0.96302 0.92938 0.93691 0.89426 0.96072 0.93180 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.71 37.16 0.32 -1.65 16 2 C 0.13 1.76 3.44 -66.32 -0.23 1.54 16 3 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 4 C -0.12 -1.63 5.41 -24.87 -0.13 -1.76 16 5 C -0.06 -0.96 0.53 -154.09 -0.08 -1.04 16 6 C 0.13 2.05 3.59 -3.31 -0.01 2.04 16 7 N -0.59 -8.79 3.25 -164.34 -0.53 -9.32 16 8 C 0.60 9.14 7.61 -12.38 -0.09 9.05 16 9 O -0.55 -8.39 11.42 5.31 0.06 -8.33 16 10 C -0.04 -0.58 6.74 -82.65 -0.56 -1.13 16 11 N -0.36 -5.36 7.04 -9.49 -0.07 -5.43 16 12 C -0.01 -0.14 11.21 -17.39 -0.19 -0.34 16 13 C 0.13 1.32 11.22 -17.26 -0.19 1.13 16 14 N -0.51 -6.29 10.52 -12.00 -0.13 -6.42 16 15 C 0.40 5.37 7.77 -154.87 -1.20 4.16 16 16 N -0.83 -9.13 8.58 31.32 0.27 -8.87 16 17 C -0.12 -1.97 4.78 -26.94 -0.13 -2.10 16 18 C 0.15 2.93 6.23 -3.65 -0.02 2.91 16 19 N -0.59 -14.12 3.00 -172.44 -0.52 -14.64 16 20 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 21 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 22 C 0.00 0.07 4.85 -17.43 -0.08 -0.01 16 23 N -0.90 -25.31 11.21 55.49 0.62 -24.69 16 24 Si 0.90 21.28 29.60 -169.99 -5.03 16.25 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.17 3.83 5.06 -3.87 -0.02 3.81 16 29 C -0.12 -2.25 4.69 -27.16 -0.13 -2.38 16 30 H 0.08 1.13 5.89 -51.93 -0.31 0.83 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 34 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 35 H 0.08 1.33 6.86 -51.93 -0.36 0.97 16 36 H 0.08 1.49 5.49 -51.92 -0.29 1.21 16 37 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.40 3.49 8.95 -40.82 -0.37 3.12 16 40 H 0.42 4.89 5.98 -40.82 -0.24 4.65 16 41 H 0.05 0.74 7.49 -51.93 -0.39 0.35 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.40 6.53 -51.93 -0.34 0.06 16 44 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.09 2.26 5.93 -51.93 -0.31 1.95 16 47 H 0.02 0.50 7.47 -51.93 -0.39 0.11 16 48 H 0.05 0.84 8.10 -51.93 -0.42 0.41 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -30.28 372.56 -9.74 -40.02 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.13 Total: 8.46 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.90 Total: 7.36 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -0.35 Total: -69.36 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.06 Total: -8.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.28 -9.74 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086911080.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.548 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds