Wall clock time and date at job start Wed Apr 1 2020 04:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47105 * 2 1 4 4 N 1.28518 * 124.44674 * 89.97680 * 3 2 1 5 5 C 1.31132 * 109.05935 * 180.02562 * 4 3 2 6 6 C 1.40929 * 105.77472 * 359.97438 * 5 4 3 7 7 C 1.47801 * 127.23284 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00211 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99561 * 180.02562 * 7 6 5 10 10 C 1.48150 * 127.83702 * 359.97438 * 9 7 6 11 11 C 1.54396 * 104.57715 * 140.39192 * 10 9 7 12 12 H 1.09004 * 111.51202 * 263.69727 * 11 10 9 13 13 C 1.54154 * 105.00088 * 23.96368 * 11 10 9 14 14 H 1.09002 * 110.82354 * 239.57782 * 13 11 10 15 15 C 1.48154 * 127.83207 * 179.97438 * 9 7 6 16 16 C 1.53009 * 109.80392 * 116.87547 * 13 11 10 17 17 H 1.09004 * 110.16704 * 179.87347 * 16 13 11 18 18 C 1.53029 * 109.28271 * 300.39521 * 16 13 11 19 19 C 1.52907 * 109.98964 * 58.56840 * 18 16 13 20 20 C 1.53266 * 109.65100 * 1.80080 * 19 18 16 21 21 H 1.08997 * 110.52484 * 176.65575 * 20 19 18 22 22 N 1.47622 * 108.17827 * 55.50862 * 20 19 18 23 23 C 1.36938 * 122.01106 * 121.22958 * 22 20 19 24 24 H 1.08000 * 120.00119 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99967 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00439 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99965 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47384 * 89.99992 * 27 25 23 29 29 H 1.48498 * 109.47073 * 210.00264 * 27 25 23 30 30 H 1.48501 * 109.46934 * 329.99988 * 27 25 23 31 31 C 1.47579 * 115.97797 * 301.25246 * 22 20 19 32 32 N 1.28589 * 124.44026 * 270.30804 * 3 2 1 33 33 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46840 * 300.00836 * 1 2 3 35 35 H 1.09005 * 109.46406 * 60.00020 * 1 2 3 36 36 H 1.08996 * 109.46840 * 239.99164 * 2 1 3 37 37 H 1.08996 * 109.46564 * 119.99428 * 2 1 3 38 38 H 1.08001 * 127.11335 * 180.02562 * 5 4 3 39 39 H 1.09000 * 110.41492 * 21.61883 * 10 9 7 40 40 H 1.08999 * 110.41650 * 259.16133 * 10 9 7 41 41 H 1.09001 * 110.40479 * 100.74410 * 15 9 7 42 42 H 1.08997 * 110.40754 * 338.31743 * 15 9 7 43 43 H 1.09003 * 109.38497 * 298.40877 * 18 16 13 44 44 H 1.08999 * 109.38291 * 178.72451 * 18 16 13 45 45 H 1.09003 * 109.44175 * 241.74904 * 19 18 16 46 46 H 1.08994 * 109.41623 * 121.83730 * 19 18 16 47 47 H 0.96997 * 120.01022 * 179.97438 * 26 25 23 48 48 H 1.09004 * 110.00803 * 241.26442 * 31 22 20 49 49 H 1.09007 * 110.08587 * 119.90128 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2603 2.0667 1.0598 5 6 2.6813 3.2589 0.7119 6 6 2.6853 3.2676 -0.6974 7 6 3.0790 4.3829 -1.5837 8 8 3.4507 5.4369 -1.1058 9 7 3.0258 4.2312 -2.9219 10 6 2.6039 3.0333 -3.6846 11 6 1.7918 3.5946 -4.8718 12 1 0.7216 3.5824 -4.6653 13 6 2.3017 5.0375 -5.0573 14 1 1.4884 5.7538 -4.9408 15 6 3.3760 5.2247 -3.9637 16 6 2.9598 5.1822 -6.4310 17 1 3.3206 6.2014 -6.5694 18 6 4.1311 4.2031 -6.5359 19 6 3.6359 2.7714 -6.3284 20 6 2.1166 2.7757 -6.1266 21 1 1.7402 1.7568 -6.0361 22 7 1.5003 3.4547 -7.2835 23 6 0.5860 2.8301 -8.0893 24 1 0.2953 1.8099 -7.8864 25 6 0.0321 3.5085 -9.1662 26 7 0.3859 4.7519 -9.4133 27 14 -1.2156 2.6567 -10.2650 28 1 -2.5828 2.8892 -9.7343 29 1 -1.1189 3.2053 -11.6415 30 1 -0.9367 1.1984 -10.2926 31 6 1.9291 4.8469 -7.5198 32 7 2.2554 2.0687 -1.0605 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3632 0.5139 -0.8901 36 1 1.8933 -0.5139 -0.8899 37 1 1.8933 -0.5137 0.8900 38 1 2.9669 4.0667 1.3693 39 1 1.9781 2.3898 -3.0663 40 1 3.4748 2.4857 -4.0449 41 1 4.3680 5.0197 -4.3661 42 1 3.3315 6.2346 -3.5560 43 1 4.8728 4.4433 -5.7741 44 1 4.5870 4.2888 -7.5223 45 1 4.1175 2.3448 -5.4485 46 1 3.8838 2.1717 -7.2042 47 1 -0.0008 5.2259 -10.1660 48 1 1.0740 5.5186 -7.4434 49 1 2.3858 4.9357 -8.5056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:13 Heat of formation + Delta-G solvation = 125.775383 kcal Electronic energy + Delta-G solvation = -31809.465126 eV Core-core repulsion = 27775.676605 eV Total energy + Delta-G solvation = -4033.788520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.81938 -40.74993 -38.77220 -35.77009 -35.13203 -33.34599 -32.76536 -31.71803 -30.81679 -30.05362 -29.87245 -27.51671 -25.72693 -25.15535 -24.31557 -22.96037 -22.00038 -21.70429 -20.95811 -20.70596 -19.64396 -17.72980 -17.40870 -16.86668 -16.80181 -16.35794 -15.85981 -15.41190 -15.16659 -14.95026 -14.73111 -14.50357 -14.24013 -13.82592 -13.60157 -13.20534 -12.80237 -12.62606 -12.41124 -12.28860 -12.21523 -12.13546 -11.90571 -11.83524 -11.49861 -11.38621 -11.18426 -11.05940 -10.89348 -10.62419 -10.58032 -10.50833 -10.40332 -10.17845 -10.13892 -9.76368 -9.64398 -9.62700 -9.29243 -9.19706 -8.50262 -8.48078 -6.84248 -5.65486 -3.02398 1.19971 1.79677 1.90956 2.97457 3.25639 3.39397 3.44777 3.46578 3.73954 4.37315 4.40356 4.48443 4.64924 4.68360 4.83890 4.97170 5.07522 5.12520 5.18532 5.26167 5.37246 5.45451 5.49025 5.53558 5.58301 5.62639 5.68535 5.72348 5.78530 5.82364 5.87820 6.09083 6.11222 6.17838 6.19689 6.24747 6.33899 6.45926 6.50998 6.55298 6.70635 6.78921 6.88973 6.96322 7.03476 7.60757 7.64432 7.71979 7.92020 7.92236 8.16978 8.33103 9.26721 9.87825 10.41712 11.39626 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003310 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.429306 B = 8458.409137 C = 9892.786029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.143 5.143 4 N -0.292 5.292 5 C 0.032 3.968 6 C -0.038 4.038 7 C 0.623 3.377 8 O -0.539 6.539 9 N -0.603 5.603 10 C 0.091 3.909 11 C -0.105 4.105 12 H 0.078 0.922 13 C -0.079 4.079 14 H 0.077 0.923 15 C 0.104 3.896 16 C -0.110 4.110 17 H 0.066 0.934 18 C -0.105 4.105 19 C -0.135 4.135 20 C 0.182 3.818 21 H 0.068 0.932 22 N -0.600 5.600 23 C -0.235 4.235 24 H 0.074 0.926 25 C -0.008 4.008 26 N -0.922 5.922 27 Si 0.908 3.092 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.283 1.283 31 C 0.203 3.797 32 N -0.243 5.243 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.207 0.793 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.250 0.750 48 H 0.048 0.952 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -7.378 17.283 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 N -0.047 5.047 4 N -0.132 5.132 5 C -0.152 4.152 6 C -0.201 4.201 7 C 0.409 3.591 8 O -0.415 6.415 9 N -0.334 5.334 10 C -0.032 4.032 11 C -0.127 4.127 12 H 0.097 0.903 13 C -0.098 4.098 14 H 0.095 0.905 15 C -0.018 4.018 16 C -0.130 4.130 17 H 0.084 0.916 18 C -0.143 4.143 19 C -0.174 4.174 20 C 0.073 3.927 21 H 0.086 0.914 22 N -0.323 5.323 23 C -0.363 4.363 24 H 0.092 0.908 25 C -0.203 4.203 26 N -0.570 5.570 27 Si 0.739 3.261 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 C 0.079 3.921 32 N -0.090 5.090 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.223 0.777 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.835 -8.005 17.453 19.801 hybrid contribution -0.478 0.435 -0.644 0.913 sum 4.357 -7.570 16.809 18.943 Atomic orbital electron populations 1.22202 0.92784 1.04150 1.03945 1.22115 0.96339 0.74093 1.06124 1.48369 1.43599 1.13410 0.99275 1.73976 1.17825 1.05557 1.15797 1.24806 1.01557 0.95218 0.93608 1.23045 1.08856 0.93573 0.94609 1.16184 0.78059 0.84880 0.79971 1.90796 1.49118 1.26970 1.74621 1.48802 1.63801 1.17119 1.03719 1.23118 0.99651 0.87607 0.92795 1.22719 0.99334 0.95486 0.95156 0.90334 1.21942 0.96662 0.97265 0.93969 0.90495 1.22787 0.99317 0.92759 0.86919 1.21806 0.97302 0.98292 0.95580 0.91560 1.21464 0.96890 0.95402 1.00496 1.22178 0.98313 0.96663 1.00261 1.20484 0.91103 0.94651 0.86436 0.91431 1.44583 1.48007 1.10892 1.28799 1.19271 1.15216 0.96364 1.05499 0.90799 1.24773 1.00298 0.96338 0.98924 1.70018 1.46292 1.09911 1.30824 0.86186 0.81341 0.78487 0.80130 1.21772 1.21800 1.20826 1.21106 0.93204 0.84697 0.93053 1.74477 1.14795 1.04620 1.15152 0.89361 0.91410 0.91030 0.86940 0.87155 0.77669 0.88831 0.90119 0.90016 0.90438 0.93241 0.92465 0.92922 0.92210 0.93887 0.93406 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.13 0.83 7.24 -4.04 -0.03 0.80 16 3 N -0.14 -1.54 3.94 -10.61 -0.04 -1.59 16 4 N -0.29 -3.39 12.01 30.90 0.37 -3.02 16 5 C 0.03 0.38 12.04 -16.83 -0.20 0.18 16 6 C -0.04 -0.53 7.06 -82.68 -0.58 -1.11 16 7 C 0.62 9.84 7.92 -12.35 -0.10 9.74 16 8 O -0.54 -9.65 17.22 5.32 0.09 -9.56 16 9 N -0.60 -9.14 3.32 -170.39 -0.57 -9.70 16 10 C 0.09 1.31 5.99 -2.40 -0.01 1.29 16 11 C -0.11 -1.77 3.34 -89.12 -0.30 -2.07 16 12 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 13 C -0.08 -1.32 3.13 -89.26 -0.28 -1.60 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.10 1.55 6.35 -2.38 -0.02 1.53 16 16 C -0.11 -1.96 2.87 -90.28 -0.26 -2.22 16 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 18 C -0.11 -1.70 5.29 -26.76 -0.14 -1.84 16 19 C -0.13 -2.22 5.54 -26.64 -0.15 -2.37 16 20 C 0.18 3.40 3.20 -67.01 -0.21 3.19 16 21 H 0.07 1.25 7.99 -51.93 -0.41 0.83 16 22 N -0.60 -14.08 2.87 -163.23 -0.47 -14.55 16 23 C -0.23 -6.18 9.98 -15.06 -0.15 -6.33 16 24 H 0.07 1.88 7.79 -52.49 -0.41 1.48 16 25 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 26 N -0.92 -26.14 9.76 55.49 0.54 -25.60 16 27 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 C 0.20 4.69 4.36 -3.13 -0.01 4.68 16 32 N -0.24 -3.09 9.25 33.42 0.31 -2.79 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.21 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.09 1.31 5.55 -51.93 -0.29 1.02 16 40 H 0.08 1.11 5.19 -51.93 -0.27 0.84 16 41 H 0.08 1.16 5.32 -51.93 -0.28 0.88 16 42 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 43 H 0.05 0.70 5.83 -51.93 -0.30 0.40 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.75 5.63 -51.93 -0.29 0.45 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.05 1.25 7.26 -51.93 -0.38 0.87 16 49 H 0.05 1.36 7.19 -51.93 -0.37 0.99 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -31.79 372.70 -8.53 -40.32 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.20 Total: 1.35 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.16 Total: 2.95 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.15 Total: -57.25 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.79 -8.53 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.092 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds