Wall clock time and date at job start Wed Apr 1 2020 04:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47105 * 2 1 4 4 N 1.28518 * 124.44674 * 89.97680 * 3 2 1 5 5 C 1.31132 * 109.05935 * 180.02562 * 4 3 2 6 6 C 1.40929 * 105.77472 * 359.97438 * 5 4 3 7 7 C 1.47801 * 127.23284 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00211 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99561 * 180.02562 * 7 6 5 10 10 C 1.48150 * 127.83702 * 359.97438 * 9 7 6 11 11 C 1.54396 * 104.57715 * 140.39192 * 10 9 7 12 12 H 1.09004 * 111.51202 * 263.69727 * 11 10 9 13 13 C 1.54154 * 105.00088 * 23.96368 * 11 10 9 14 14 H 1.09002 * 110.82354 * 239.57782 * 13 11 10 15 15 C 1.48154 * 127.83207 * 179.97438 * 9 7 6 16 16 C 1.53009 * 109.80392 * 116.87547 * 13 11 10 17 17 H 1.09004 * 110.16704 * 179.87347 * 16 13 11 18 18 C 1.53029 * 109.28271 * 300.39521 * 16 13 11 19 19 C 1.52907 * 109.98964 * 58.56840 * 18 16 13 20 20 C 1.53266 * 109.65100 * 1.80080 * 19 18 16 21 21 H 1.08997 * 110.52484 * 176.65575 * 20 19 18 22 22 N 1.47622 * 108.17827 * 55.50862 * 20 19 18 23 23 C 1.36938 * 122.01106 * 121.22958 * 22 20 19 24 24 H 1.08000 * 120.00119 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99967 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00439 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99965 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47384 * 89.99992 * 27 25 23 29 29 H 1.48498 * 109.47073 * 210.00264 * 27 25 23 30 30 H 1.48501 * 109.46934 * 329.99988 * 27 25 23 31 31 C 1.47579 * 115.97797 * 301.25246 * 22 20 19 32 32 N 1.28589 * 124.44026 * 270.30804 * 3 2 1 33 33 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46840 * 300.00836 * 1 2 3 35 35 H 1.09005 * 109.46406 * 60.00020 * 1 2 3 36 36 H 1.08996 * 109.46840 * 239.99164 * 2 1 3 37 37 H 1.08996 * 109.46564 * 119.99428 * 2 1 3 38 38 H 1.08001 * 127.11335 * 180.02562 * 5 4 3 39 39 H 1.09000 * 110.41492 * 21.61883 * 10 9 7 40 40 H 1.08999 * 110.41650 * 259.16133 * 10 9 7 41 41 H 1.09001 * 110.40479 * 100.74410 * 15 9 7 42 42 H 1.08997 * 110.40754 * 338.31743 * 15 9 7 43 43 H 1.09003 * 109.38497 * 298.40877 * 18 16 13 44 44 H 1.08999 * 109.38291 * 178.72451 * 18 16 13 45 45 H 1.09003 * 109.44175 * 241.74904 * 19 18 16 46 46 H 1.08994 * 109.41623 * 121.83730 * 19 18 16 47 47 H 0.96997 * 120.01022 * 179.97438 * 26 25 23 48 48 H 1.09004 * 110.00803 * 241.26442 * 31 22 20 49 49 H 1.09007 * 110.08587 * 119.90128 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2603 2.0667 1.0598 5 6 2.6813 3.2589 0.7119 6 6 2.6853 3.2676 -0.6974 7 6 3.0790 4.3829 -1.5837 8 8 3.4507 5.4369 -1.1058 9 7 3.0258 4.2312 -2.9219 10 6 2.6039 3.0333 -3.6846 11 6 1.7918 3.5946 -4.8718 12 1 0.7216 3.5824 -4.6653 13 6 2.3017 5.0375 -5.0573 14 1 1.4884 5.7538 -4.9408 15 6 3.3760 5.2247 -3.9637 16 6 2.9598 5.1822 -6.4310 17 1 3.3206 6.2014 -6.5694 18 6 4.1311 4.2031 -6.5359 19 6 3.6359 2.7714 -6.3284 20 6 2.1166 2.7757 -6.1266 21 1 1.7402 1.7568 -6.0361 22 7 1.5003 3.4547 -7.2835 23 6 0.5860 2.8301 -8.0893 24 1 0.2953 1.8099 -7.8864 25 6 0.0321 3.5085 -9.1662 26 7 0.3859 4.7519 -9.4133 27 14 -1.2156 2.6567 -10.2650 28 1 -2.5828 2.8892 -9.7343 29 1 -1.1189 3.2053 -11.6415 30 1 -0.9367 1.1984 -10.2926 31 6 1.9291 4.8469 -7.5198 32 7 2.2554 2.0687 -1.0605 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3632 0.5139 -0.8901 36 1 1.8933 -0.5139 -0.8899 37 1 1.8933 -0.5137 0.8900 38 1 2.9669 4.0667 1.3693 39 1 1.9781 2.3898 -3.0663 40 1 3.4748 2.4857 -4.0449 41 1 4.3680 5.0197 -4.3661 42 1 3.3315 6.2346 -3.5560 43 1 4.8728 4.4433 -5.7741 44 1 4.5870 4.2888 -7.5223 45 1 4.1175 2.3448 -5.4485 46 1 3.8838 2.1717 -7.2042 47 1 -0.0008 5.2259 -10.1660 48 1 1.0740 5.5186 -7.4434 49 1 2.3858 4.9357 -8.5056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087353631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:12 Heat of formation + Delta-G solvation = 106.027161 kcal Electronic energy + Delta-G solvation = -31810.321473 eV Core-core repulsion = 27775.676605 eV Total energy + Delta-G solvation = -4034.644868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.70875 -42.14323 -40.06330 -37.22196 -35.80163 -35.03443 -33.80477 -33.21920 -31.81171 -31.66640 -31.14121 -28.95576 -27.08874 -26.52692 -25.25879 -24.11110 -23.63847 -22.59665 -22.31723 -22.15295 -20.78249 -19.21329 -18.52820 -18.12912 -17.72617 -17.69570 -17.21370 -16.74872 -16.59318 -16.26405 -15.95256 -15.76665 -15.43656 -15.08244 -14.82433 -14.24281 -14.14210 -13.82740 -13.72407 -13.63190 -13.47120 -13.10201 -13.03845 -12.90372 -12.87190 -12.82173 -12.57208 -12.48348 -12.30793 -12.21631 -12.08540 -11.92035 -11.78096 -11.65776 -11.49943 -11.30887 -11.14448 -10.79928 -10.68886 -10.51756 -10.46426 -9.72198 -8.79322 -7.71219 -5.09183 0.20137 0.88336 1.17987 1.47996 1.48424 1.56849 1.85314 2.12608 2.53931 2.83481 3.39335 3.46472 3.54299 3.73300 3.82363 3.87696 3.93236 3.94827 4.04277 4.16786 4.25075 4.26699 4.31287 4.34414 4.46508 4.56806 4.57443 4.64034 4.69338 4.72442 4.75755 4.79141 4.91001 4.92690 4.96109 5.03540 5.13471 5.16390 5.17253 5.29340 5.41683 5.46380 5.54631 5.57140 5.62429 5.66661 5.82216 5.94842 6.32594 6.41582 6.87529 7.11493 7.22534 7.94043 8.43970 9.31507 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003310 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.429306 B = 8458.409137 C = 9892.786029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.133 5.133 4 N -0.295 5.295 5 C 0.030 3.970 6 C -0.063 4.063 7 C 0.624 3.376 8 O -0.565 6.565 9 N -0.605 5.605 10 C 0.107 3.893 11 C -0.100 4.100 12 H 0.056 0.944 13 C -0.076 4.076 14 H 0.058 0.942 15 C 0.113 3.887 16 C -0.101 4.101 17 H 0.079 0.921 18 C -0.101 4.101 19 C -0.128 4.128 20 C 0.175 3.825 21 H 0.070 0.930 22 N -0.616 5.616 23 C -0.239 4.239 24 H 0.081 0.919 25 C -0.067 4.067 26 N -0.951 5.951 27 Si 0.968 3.032 28 H -0.292 1.292 29 H -0.300 1.300 30 H -0.268 1.268 31 C 0.216 3.784 32 N -0.247 5.247 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.223 0.777 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.241 0.759 48 H 0.005 0.995 49 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -9.666 19.395 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.002 3.998 3 N -0.038 5.038 4 N -0.135 5.135 5 C -0.153 4.153 6 C -0.224 4.224 7 C 0.411 3.589 8 O -0.443 6.443 9 N -0.336 5.336 10 C -0.015 4.015 11 C -0.121 4.121 12 H 0.075 0.925 13 C -0.096 4.096 14 H 0.077 0.923 15 C -0.009 4.009 16 C -0.120 4.120 17 H 0.097 0.903 18 C -0.139 4.139 19 C -0.167 4.167 20 C 0.068 3.932 21 H 0.089 0.911 22 N -0.339 5.339 23 C -0.369 4.369 24 H 0.098 0.902 25 C -0.259 4.259 26 N -0.601 5.601 27 Si 0.797 3.203 28 H -0.219 1.219 29 H -0.227 1.227 30 H -0.193 1.193 31 C 0.091 3.909 32 N -0.096 5.096 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.240 0.760 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.023 0.977 49 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 6.103 -10.332 19.600 22.982 hybrid contribution -0.950 1.050 -1.240 1.882 sum 5.153 -9.282 18.360 21.208 Atomic orbital electron populations 1.22180 0.92399 1.05517 1.02449 1.22640 0.96619 0.72247 1.08295 1.48902 1.41986 1.14279 0.98601 1.73997 1.17970 1.05520 1.16030 1.25128 1.01068 0.95820 0.93235 1.22826 1.10831 0.93719 0.95022 1.16387 0.77433 0.85015 0.80047 1.90776 1.50343 1.28152 1.75040 1.48808 1.63777 1.17228 1.03765 1.22985 0.99837 0.87218 0.91495 1.22523 0.98625 0.95465 0.95497 0.92512 1.21828 0.96842 0.96815 0.94079 0.92312 1.22690 0.99069 0.92965 0.86130 1.21651 0.96524 0.99659 0.94176 0.90316 1.21456 0.96518 0.94587 1.01315 1.22094 0.96278 0.96910 1.01385 1.20754 0.92522 0.94588 0.85314 0.91146 1.44845 1.47925 1.11235 1.29934 1.19681 1.15058 0.96671 1.05466 0.90158 1.25522 1.02583 0.97081 1.00732 1.70269 1.47566 1.11221 1.31063 0.85228 0.79009 0.78164 0.77856 1.21926 1.22654 1.19330 1.20661 0.92757 0.84169 0.93288 1.74389 1.14779 1.04458 1.16019 0.86589 0.92346 0.92978 0.85163 0.84683 0.76024 0.88189 0.88380 0.88151 0.90506 0.89817 0.93269 0.89369 0.93334 0.94894 0.97727 0.96754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 71.98 0.74 -0.79 16 2 C 0.12 1.13 7.24 86.38 0.63 1.75 16 3 N -0.13 -2.52 3.94 -187.49 -0.74 -3.26 16 4 N -0.30 -6.19 12.01 -56.16 -0.67 -6.87 16 5 C 0.03 0.67 12.04 85.46 1.03 1.70 16 6 C -0.06 -1.63 7.06 42.24 0.30 -1.33 16 7 C 0.62 18.64 7.92 86.77 0.69 19.33 16 8 O -0.56 -19.52 17.22 -3.89 -0.07 -19.59 16 9 N -0.60 -16.99 3.32 -811.25 -2.69 -19.68 16 10 C 0.11 2.79 5.99 86.54 0.52 3.31 16 11 C -0.10 -3.26 3.34 -9.82 -0.03 -3.29 16 12 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 13 C -0.08 -2.49 3.13 -9.91 -0.03 -2.52 16 14 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 15 C 0.11 3.12 6.35 86.55 0.55 3.67 16 16 C -0.10 -3.55 2.87 -10.57 -0.03 -3.58 16 17 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 18 C -0.10 -3.06 5.29 30.57 0.16 -2.89 16 19 C -0.13 -3.88 5.54 30.65 0.17 -3.72 16 20 C 0.18 6.36 3.20 44.97 0.14 6.51 16 21 H 0.07 2.50 7.99 -2.39 -0.02 2.48 16 22 N -0.62 -29.51 2.87 -670.33 -1.93 -31.43 16 23 C -0.24 -12.82 9.98 84.03 0.84 -11.98 16 24 H 0.08 4.10 7.79 -2.91 -0.02 4.08 16 25 C -0.07 -3.73 5.47 84.86 0.46 -3.27 16 26 N -0.95 -56.54 9.76 21.65 0.21 -56.33 16 27 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 28 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 31 C 0.22 10.39 4.36 86.38 0.38 10.76 16 32 N -0.25 -5.73 9.25 -48.17 -0.45 -6.18 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.22 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.10 2.55 5.55 -2.39 -0.01 2.54 16 40 H 0.10 2.26 5.19 -2.39 -0.01 2.25 16 41 H 0.10 2.44 5.32 -2.39 -0.01 2.42 16 42 H 0.08 2.18 7.88 -2.39 -0.02 2.17 16 43 H 0.08 2.00 5.83 -2.39 -0.01 1.99 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 2.09 5.63 -2.39 -0.01 2.07 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.00 0.25 7.26 -2.39 -0.02 0.24 16 49 H 0.01 0.79 7.19 -2.38 -0.02 0.77 16 Total: -1.00 -71.84 372.70 3.17 -68.66 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.97 Total: 13.60 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.51 Total: 13.66 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -6.26 Total: -123.75 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.07 Total: -19.59 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.84 3.17 -68.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.692 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds