Wall clock time and date at job start Wed Apr 1 2020 04:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47115 * 2 1 4 4 N 1.28518 * 124.45019 * 270.27536 * 3 2 1 5 5 C 1.31126 * 109.06253 * 180.15708 * 4 3 2 6 6 C 1.40930 * 105.77736 * 359.62328 * 5 4 3 7 7 C 1.47798 * 127.23960 * 180.25200 * 6 5 4 8 8 O 1.21555 * 120.00059 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00262 * 180.02562 * 7 6 5 10 10 C 1.48162 * 127.84058 * 179.97438 * 9 7 6 11 11 C 1.54372 * 104.55677 * 140.33384 * 10 9 7 12 12 H 1.09008 * 110.79821 * 264.49218 * 11 10 9 13 13 C 1.54163 * 104.99462 * 24.14695 * 11 10 9 14 14 H 1.08994 * 111.00651 * 239.61539 * 13 11 10 15 15 C 1.48138 * 127.83455 * 359.68289 * 9 7 6 16 16 C 1.53270 * 109.35855 * 116.88104 * 13 11 10 17 17 H 1.09003 * 110.51574 * 182.69078 * 16 13 11 18 18 C 1.53341 * 108.64069 * 60.71532 * 16 13 11 19 19 C 1.52935 * 109.05176 * 298.42614 * 18 16 13 20 20 C 1.52966 * 109.12752 * 141.79104 * 11 10 9 21 21 H 1.09003 * 109.64848 * 65.65364 * 20 11 10 22 22 C 1.52279 * 109.79878 * 304.91291 * 20 11 10 23 23 N 1.47573 * 106.88094 * 300.83096 * 22 20 11 24 24 C 1.36940 * 122.01276 * 179.57925 * 23 22 20 25 25 H 1.08005 * 119.99817 * 180.02562 * 24 23 22 26 26 C 1.38808 * 119.99774 * 0.02562 * 24 23 22 27 27 N 1.31616 * 120.00648 * 359.97438 * 26 24 23 28 28 Si 1.86808 * 119.99865 * 180.02562 * 26 24 23 29 29 H 1.48510 * 109.46768 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46991 * 119.99757 * 28 26 24 31 31 H 1.48497 * 109.47212 * 239.99981 * 28 26 24 32 32 N 1.28594 * 124.44128 * 90.00510 * 3 2 1 33 33 H 1.08999 * 109.47121 * 59.99519 * 1 2 3 34 34 H 1.08998 * 109.46809 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46561 * 299.99383 * 1 2 3 36 36 H 1.09005 * 109.46996 * 240.00453 * 2 1 3 37 37 H 1.08999 * 109.47121 * 120.00481 * 2 1 3 38 38 H 1.08002 * 127.11506 * 179.89449 * 5 4 3 39 39 H 1.08995 * 110.41764 * 259.10556 * 10 9 7 40 40 H 1.09002 * 110.41570 * 21.44530 * 10 9 7 41 41 H 1.09001 * 110.40340 * 338.23269 * 15 9 7 42 42 H 1.08999 * 110.40788 * 100.65359 * 15 9 7 43 43 H 1.09005 * 109.45284 * 59.42999 * 18 16 13 44 44 H 1.08995 * 109.45468 * 179.35331 * 18 16 13 45 45 H 1.09009 * 109.90609 * 241.00435 * 19 18 16 46 46 H 1.09005 * 108.22300 * 121.61716 * 19 18 16 47 47 H 1.09005 * 110.18347 * 181.33189 * 22 20 11 48 48 H 1.08996 * 109.73301 * 60.08280 * 22 20 11 49 49 H 0.96995 * 120.00702 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2559 2.0684 -1.0598 5 6 2.6821 3.2586 -0.7119 6 6 2.6853 3.2677 0.6974 7 6 3.0792 4.3829 1.5838 8 8 3.4518 5.4366 1.1059 9 7 3.0262 4.2312 2.9219 10 6 3.3776 5.2242 3.9638 11 6 2.3013 5.0392 5.0549 12 1 1.4883 5.7531 4.9216 13 6 1.7954 3.5941 4.8751 14 1 0.7262 3.5779 4.6640 15 6 2.5979 3.0357 3.6846 16 6 2.1174 2.7827 6.1349 17 1 1.8100 1.7444 6.0095 18 6 1.4023 3.4265 7.3287 19 6 1.9246 4.8519 7.5141 20 6 2.9509 5.1932 6.4311 21 1 3.3041 6.2167 6.5572 22 6 4.1185 4.2244 6.5616 23 7 3.5713 2.8665 6.3764 24 6 4.3646 1.7513 6.4251 25 1 3.9297 0.7727 6.2846 26 6 5.7276 1.8787 6.6551 27 7 6.2576 3.0712 6.8258 28 14 6.8099 0.3575 6.7208 29 1 5.9775 -0.8521 6.4982 30 1 7.8495 0.4437 5.6640 31 1 7.4628 0.2717 8.0518 32 7 2.2609 2.0669 1.0605 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3632 0.5138 0.8901 36 1 1.8933 -0.5138 -0.8901 37 1 1.8934 -0.5139 0.8899 38 1 2.9671 4.0667 -1.3693 39 1 4.3684 5.0169 4.3680 40 1 3.3381 6.2341 3.5554 41 1 1.9656 2.3975 3.0673 42 1 3.4660 2.4811 4.0411 43 1 0.3275 3.4342 7.1470 44 1 1.6133 2.8525 8.2310 45 1 2.3876 4.9528 8.4958 46 1 1.0798 5.5368 7.4406 47 1 4.5716 4.3124 7.5492 48 1 4.8601 4.4359 5.7913 49 1 7.2100 3.1602 6.9868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087353632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:16 Heat of formation + Delta-G solvation = 103.219369 kcal Electronic energy + Delta-G solvation = -32360.948565 eV Core-core repulsion = 28326.181942 eV Total energy + Delta-G solvation = -4034.766623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.72478 -42.00781 -40.06266 -37.07716 -35.81480 -35.17307 -33.86111 -33.17949 -31.86721 -31.56797 -31.13033 -28.56449 -27.10762 -26.66975 -25.29280 -24.13648 -23.66001 -22.62751 -22.37625 -21.87029 -20.74847 -19.24217 -18.48987 -18.09200 -17.73461 -17.38640 -17.15443 -16.95482 -16.59154 -15.98811 -15.92517 -15.82862 -15.63080 -15.07440 -14.60832 -14.46189 -13.96651 -13.88620 -13.66720 -13.57099 -13.28327 -13.11276 -13.09803 -12.96888 -12.88633 -12.67807 -12.55228 -12.37912 -12.35845 -12.23226 -12.05607 -11.83087 -11.71768 -11.66343 -11.52583 -11.33573 -11.16694 -10.73436 -10.63196 -10.53287 -10.44951 -9.67974 -8.73402 -7.68187 -5.04237 0.19134 0.86163 1.17077 1.45086 1.46814 1.54725 1.89822 2.12823 2.54474 2.82882 3.42105 3.48926 3.63269 3.75519 3.80900 3.91686 3.92833 3.94966 4.03731 4.24844 4.32310 4.36037 4.40667 4.46120 4.54873 4.56985 4.62945 4.64367 4.68432 4.73106 4.75775 4.91566 4.92435 4.99956 5.02928 5.07745 5.16956 5.19359 5.27434 5.34127 5.34791 5.44497 5.58305 5.61214 5.62420 5.73592 5.89049 6.03021 6.37046 6.47684 6.87426 7.10206 7.26183 7.98300 8.47631 9.34060 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.004265 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.646240 B = 6563.271448 C = 7481.212041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.132 5.132 4 N -0.293 5.293 5 C 0.030 3.970 6 C -0.063 4.063 7 C 0.618 3.382 8 O -0.571 6.571 9 N -0.602 5.602 10 C 0.106 3.894 11 C -0.070 4.070 12 H 0.099 0.901 13 C -0.101 4.101 14 H 0.101 0.899 15 C 0.113 3.887 16 C 0.171 3.829 17 H 0.071 0.929 18 C -0.122 4.122 19 C -0.096 4.096 20 C -0.104 4.104 21 H 0.076 0.924 22 C 0.210 3.790 23 N -0.607 5.607 24 C -0.224 4.224 25 H 0.080 0.920 26 C -0.064 4.064 27 N -0.948 5.948 28 Si 0.956 3.044 29 H -0.265 1.265 30 H -0.305 1.305 31 H -0.299 1.299 32 N -0.249 5.249 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.224 0.776 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.078 0.922 47 H 0.008 0.992 48 H 0.020 0.980 49 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.921 -3.357 -10.191 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.037 5.037 4 N -0.133 5.133 5 C -0.152 4.152 6 C -0.224 4.224 7 C 0.405 3.595 8 O -0.450 6.450 9 N -0.332 5.332 10 C -0.016 4.016 11 C -0.089 4.089 12 H 0.117 0.883 13 C -0.122 4.122 14 H 0.119 0.881 15 C -0.010 4.010 16 C 0.064 3.936 17 H 0.089 0.911 18 C -0.161 4.161 19 C -0.133 4.133 20 C -0.123 4.123 21 H 0.095 0.905 22 C 0.086 3.914 23 N -0.331 5.331 24 C -0.354 4.354 25 H 0.098 0.902 26 C -0.257 4.257 27 N -0.599 5.599 28 Si 0.787 3.213 29 H -0.189 1.189 30 H -0.233 1.233 31 H -0.227 1.227 32 N -0.098 5.098 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.241 0.759 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.026 0.974 48 H 0.037 0.963 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.997 -4.116 -10.514 19.580 hybrid contribution 1.990 0.218 0.315 2.026 sum -14.007 -3.898 -10.199 17.760 Atomic orbital electron populations 1.22157 0.91522 1.05638 1.02744 1.22662 0.97314 0.72202 1.07936 1.48920 1.41936 1.14303 0.98573 1.73963 1.18058 1.05325 1.15959 1.25108 1.01118 0.95967 0.93023 1.22822 1.10912 0.93570 0.95122 1.16466 0.77633 0.85206 0.80152 1.90744 1.50731 1.28369 1.75144 1.48822 1.63035 1.17538 1.03816 1.22628 0.99430 0.92367 0.87153 1.21892 0.96597 0.97396 0.93027 0.88276 1.22581 0.99551 0.94923 0.95182 0.88052 1.22610 0.99332 0.87034 0.91988 1.20821 0.83316 0.97254 0.92208 0.91054 1.21964 0.99827 0.96081 0.98226 1.21302 0.97818 0.97113 0.97093 1.21434 0.96853 0.99550 0.94491 0.90542 1.20550 0.91015 0.82428 0.97407 1.44765 1.02690 1.02405 1.83193 1.19606 0.89458 0.87372 1.38952 0.90226 1.25385 0.98244 0.98391 1.03670 1.70259 1.10337 1.21445 1.57819 0.85317 0.79223 0.80603 0.76123 1.18905 1.23339 1.22652 1.74443 1.14984 1.04336 1.16023 0.92050 0.86478 0.92510 0.84871 0.85873 0.75922 0.92084 0.90474 0.88341 0.92137 0.89509 0.93793 0.93674 0.90381 0.97417 0.96250 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.24 71.98 0.74 -0.92 16 2 C 0.12 1.54 7.24 86.38 0.63 2.17 16 3 N -0.13 -3.12 3.94 -187.48 -0.74 -3.86 16 4 N -0.29 -7.36 12.01 -56.16 -0.67 -8.03 16 5 C 0.03 0.82 12.04 85.46 1.03 1.85 16 6 C -0.06 -2.03 7.06 42.24 0.30 -1.73 16 7 C 0.62 23.05 7.92 86.77 0.69 23.73 16 8 O -0.57 -23.58 17.22 -3.89 -0.07 -23.65 16 9 N -0.60 -22.14 3.32 -812.08 -2.70 -24.84 16 10 C 0.11 3.89 6.37 86.53 0.55 4.44 16 11 C -0.07 -2.17 3.12 -9.95 -0.03 -2.20 16 12 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 13 C -0.10 -3.11 3.11 -9.95 -0.03 -3.14 16 14 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 15 C 0.11 3.94 6.08 86.42 0.53 4.47 16 16 C 0.17 5.94 3.04 44.98 0.14 6.08 16 17 H 0.07 2.43 7.99 -2.39 -0.02 2.41 16 18 C -0.12 -3.62 5.89 30.69 0.18 -3.44 16 19 C -0.10 -2.85 5.57 30.59 0.17 -2.68 16 20 C -0.10 -3.57 2.86 -11.02 -0.03 -3.60 16 21 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 22 C 0.21 9.75 3.94 85.94 0.34 10.09 16 23 N -0.61 -27.58 2.00 -672.87 -1.35 -28.92 16 24 C -0.22 -11.58 9.30 84.03 0.78 -10.79 16 25 H 0.08 3.95 7.79 -2.91 -0.02 3.92 16 26 C -0.06 -3.55 5.47 84.86 0.46 -3.08 16 27 N -0.95 -55.73 9.76 21.65 0.21 -55.52 16 28 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 29 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 30 H -0.31 -15.00 7.11 99.48 0.71 -14.30 16 31 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 32 N -0.25 -7.25 9.26 -48.17 -0.45 -7.70 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.22 4.88 8.06 -2.91 -0.02 4.86 16 39 H 0.06 2.69 5.36 -2.39 -0.01 2.68 16 40 H 0.08 2.70 7.88 -2.39 -0.02 2.68 16 41 H 0.10 3.14 5.58 -2.39 -0.01 3.13 16 42 H 0.06 2.65 6.42 -2.39 -0.02 2.63 16 43 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.01 0.42 7.23 -2.38 -0.02 0.40 16 48 H 0.02 1.05 4.91 -2.39 -0.01 1.03 16 49 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -70.88 374.87 3.67 -67.21 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.96 Total: 16.58 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.43 Total: 21.23 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -5.69 Total: -128.87 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.07 Total: -23.65 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.88 3.67 -67.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.432 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds