Wall clock time and date at job start Wed Apr 1 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46976 * 2 1 4 4 N 1.28705 * 126.03770 * 266.75574 * 3 2 1 5 5 N 1.28512 * 110.64431 * 180.02562 * 4 3 2 6 6 C 1.33328 * 109.43273 * 359.72238 * 5 4 3 7 7 C 1.37003 * 106.37032 * 0.43074 * 6 5 4 8 8 C 1.47229 * 127.18617 * 179.84553 * 7 6 5 9 9 O 1.21619 * 120.00136 * 186.62073 * 8 7 6 10 10 N 1.34782 * 120.00164 * 6.62538 * 8 7 6 11 11 C 1.49401 * 125.93938 * 179.27453 * 10 8 7 12 12 C 1.49055 * 104.08903 * 174.02049 * 11 10 8 13 13 H 1.08994 * 106.98055 * 283.85571 * 12 11 10 14 14 C 1.55932 * 102.46232 * 33.25888 * 12 11 10 15 15 H 1.09001 * 109.45710 * 66.49495 * 14 12 11 16 16 C 1.49665 * 125.93532 * 359.24386 * 10 8 7 17 17 C 1.51054 * 104.46899 * 183.72833 * 14 12 11 18 18 H 1.08996 * 113.45066 * 155.96170 * 17 14 12 19 19 C 1.54571 * 109.00290 * 28.58048 * 17 14 12 20 20 C 1.56815 * 107.51466 * 285.63587 * 19 17 14 21 21 C 1.49362 * 128.19548 * 157.31323 * 12 11 10 22 22 H 1.08993 * 112.90256 * 31.29429 * 21 12 11 23 23 C 1.55135 * 109.57316 * 263.54708 * 21 12 11 24 24 N 1.48785 * 106.18383 * 290.98955 * 23 21 12 25 25 C 1.36934 * 123.52166 * 213.31266 * 24 23 21 26 26 H 1.07995 * 120.00147 * 162.22674 * 25 24 23 27 27 C 1.38819 * 120.00158 * 342.22895 * 25 24 23 28 28 N 1.31623 * 119.99741 * 349.46208 * 27 25 24 29 29 Si 1.86791 * 120.00142 * 169.46004 * 27 25 24 30 30 H 1.48500 * 109.47167 * 59.99849 * 29 27 25 31 31 H 1.48499 * 109.47296 * 179.97438 * 29 27 25 32 32 H 1.48507 * 109.47149 * 299.99919 * 29 27 25 33 33 H 1.08988 * 109.47335 * 295.23129 * 1 2 3 34 34 H 1.09002 * 109.46986 * 55.23466 * 1 2 3 35 35 H 1.08998 * 109.46695 * 175.22821 * 1 2 3 36 36 H 1.09006 * 109.47364 * 240.00449 * 2 1 3 37 37 H 1.09003 * 109.47103 * 119.99815 * 2 1 3 38 38 H 1.07997 * 126.81177 * 180.28119 * 6 5 4 39 39 H 1.09003 * 110.39404 * 293.75020 * 11 10 8 40 40 H 1.09001 * 110.39365 * 56.03031 * 11 10 8 41 41 H 1.08997 * 110.74882 * 37.06535 * 16 10 8 42 42 H 1.09005 * 110.75206 * 273.71522 * 16 10 8 43 43 H 1.09000 * 109.57277 * 45.07639 * 19 17 14 44 44 H 1.08997 * 109.57384 * 165.46812 * 19 17 14 45 45 H 1.08997 * 110.41181 * 276.81855 * 20 19 17 46 46 H 1.09000 * 109.68053 * 155.24764 * 20 19 17 47 47 H 1.09004 * 110.10533 * 50.15311 * 23 21 12 48 48 H 1.08999 * 110.10267 * 171.70745 * 23 21 12 49 49 H 0.96992 * 119.99913 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3263 2.0755 -1.0391 5 7 2.7215 3.2500 -0.6985 6 6 2.6765 3.3655 0.6290 7 6 2.2284 2.1621 1.1064 8 6 2.0117 1.7880 2.5138 9 8 1.7239 0.6417 2.8010 10 7 2.1321 2.7158 3.4840 11 6 1.9277 2.4872 4.9462 12 6 2.3251 3.7791 5.5745 13 1 3.4144 3.8161 5.5643 14 6 1.8939 4.8229 4.4993 15 1 0.8073 4.8277 4.4132 16 6 2.4946 4.1540 3.2838 17 6 2.3630 6.1486 5.0508 18 1 2.5211 6.9062 4.2833 19 6 3.6022 5.9120 5.9440 20 6 3.1018 5.2719 7.2853 21 6 1.9201 4.3219 6.9057 22 1 1.7418 3.5416 7.6455 23 6 0.7253 5.2954 6.7283 24 7 1.2640 6.4883 6.0207 25 6 0.8075 7.7621 6.2305 26 1 1.4045 8.6074 5.9216 27 6 -0.4226 7.9670 6.8403 28 7 -1.2407 6.9533 7.0288 29 14 -0.9168 9.6814 7.3934 30 1 -0.9417 10.5920 6.2207 31 1 -2.2667 9.6326 8.0103 32 1 0.0649 10.1826 8.3886 33 1 -0.3633 0.4380 0.9295 34 1 -0.3633 0.5860 -0.8442 35 1 -0.3632 -1.0241 -0.0855 36 1 1.8934 -0.5138 -0.8901 37 1 1.8934 -0.5138 0.8900 38 1 2.9430 4.2344 1.2124 39 1 0.8840 2.2483 5.1510 40 1 2.5764 1.6857 5.2997 41 1 2.0464 4.5414 2.3689 42 1 3.5771 4.2810 3.2685 43 1 4.2899 5.2318 5.4416 44 1 4.1004 6.8621 6.1364 45 1 2.7547 6.0460 7.9697 46 1 3.9093 4.7005 7.7430 47 1 -0.0552 4.8256 6.1299 48 1 0.3285 5.5828 7.7020 49 1 -2.1003 7.0965 7.4545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087357417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:42 Heat of formation + Delta-G solvation = 147.648830 kcal Electronic energy + Delta-G solvation = -31934.120650 eV Core-core repulsion = 27901.280634 eV Total energy + Delta-G solvation = -4032.840017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.46984 -41.26227 -39.07657 -36.41922 -35.45245 -33.28343 -32.06816 -31.20656 -31.01713 -30.08469 -29.63301 -27.95044 -25.92369 -25.06565 -24.22281 -23.02603 -22.20526 -21.84475 -21.06856 -20.56145 -19.80715 -17.65119 -17.48409 -17.24645 -16.63606 -16.55612 -16.08545 -15.44945 -15.18725 -14.94352 -14.81658 -14.44187 -14.26592 -13.99277 -13.41898 -13.28860 -13.18607 -12.77768 -12.56829 -12.43968 -12.29505 -12.21935 -11.87704 -11.61083 -11.37365 -11.19010 -11.11988 -11.07364 -11.01527 -10.89542 -10.72391 -10.53669 -10.42003 -10.28121 -10.22242 -10.01800 -9.74672 -9.63613 -9.28557 -9.17185 -8.79089 -8.54906 -6.82513 -5.79599 -3.15915 0.78726 1.84464 2.17053 2.73336 2.95045 3.36403 3.42230 3.42640 3.98181 4.17800 4.35967 4.47615 4.53556 4.55390 4.71823 4.85923 4.87732 4.95625 5.11083 5.23148 5.26579 5.29766 5.38825 5.44231 5.54392 5.56133 5.61171 5.71302 5.73067 5.74320 5.78277 5.82997 5.93848 5.95630 6.06707 6.15110 6.21873 6.25569 6.31446 6.40902 6.60456 6.65028 6.84665 6.94733 7.00513 7.26356 7.35765 7.55534 7.74656 7.82365 8.20155 8.21787 9.11851 9.72779 10.37939 11.30530 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003009 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.482245 B = 9302.738578 C = 9641.158611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.254 5.254 4 N -0.063 5.063 5 N -0.275 5.275 6 C -0.011 4.011 7 C -0.062 4.062 8 C 0.608 3.392 9 O -0.544 6.544 10 N -0.603 5.603 11 C 0.139 3.861 12 C -0.120 4.120 13 H 0.071 0.929 14 C -0.124 4.124 15 H 0.096 0.904 16 C 0.098 3.902 17 C 0.176 3.824 18 H 0.078 0.922 19 C -0.129 4.129 20 C -0.093 4.093 21 C -0.101 4.101 22 H 0.077 0.923 23 C 0.188 3.812 24 N -0.597 5.597 25 C -0.235 4.235 26 H 0.071 0.929 27 C -0.003 4.003 28 N -0.915 5.915 29 Si 0.906 3.094 30 H -0.285 1.285 31 H -0.291 1.291 32 H -0.285 1.285 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.210 0.790 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.025 0.975 48 H 0.077 0.923 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 -12.060 -7.799 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.052 5.052 4 N -0.043 5.043 5 N -0.137 5.137 6 C -0.171 4.171 7 C -0.196 4.196 8 C 0.394 3.606 9 O -0.422 6.422 10 N -0.336 5.336 11 C 0.019 3.981 12 C -0.139 4.139 13 H 0.089 0.911 14 C -0.144 4.144 15 H 0.114 0.886 16 C -0.024 4.024 17 C 0.069 3.931 18 H 0.096 0.904 19 C -0.169 4.169 20 C -0.131 4.131 21 C -0.121 4.121 22 H 0.095 0.905 23 C 0.064 3.936 24 N -0.322 5.322 25 C -0.364 4.364 26 H 0.089 0.911 27 C -0.200 4.200 28 N -0.561 5.561 29 Si 0.736 3.264 30 H -0.211 1.211 31 H -0.217 1.217 32 H -0.212 1.212 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.226 0.774 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.096 0.904 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.737 -12.680 -9.158 17.450 hybrid contribution -0.494 0.819 1.341 1.647 sum 7.243 -11.860 -7.817 15.945 Atomic orbital electron populations 1.22104 0.92624 1.04012 1.03627 1.22387 0.96819 0.75748 1.06515 1.47873 1.40360 1.13524 1.03427 1.78226 1.14579 0.99790 1.11708 1.74928 1.16715 1.09361 1.12722 1.24651 1.02409 0.98075 0.91967 1.21881 1.13018 0.93852 0.90895 1.16218 0.77894 0.84392 0.82057 1.90778 1.49894 1.18641 1.82922 1.49438 1.67191 1.09903 1.07070 1.21016 1.01938 0.97855 0.77325 1.21244 1.02228 0.93199 0.97246 0.91124 1.22533 1.02832 0.96661 0.92397 0.88563 1.22344 1.00255 0.79544 1.00246 1.21050 0.89328 0.91808 0.90953 0.90445 1.23092 0.97781 0.99266 0.96729 1.22697 0.95499 0.97948 0.96949 1.21929 0.99574 0.97009 0.93577 0.90506 1.21489 0.89690 0.84578 0.97880 1.45677 1.40622 1.03570 1.42338 1.19075 0.99361 0.83005 1.35001 0.91134 1.24897 0.95572 0.97198 1.02341 1.69939 1.09243 1.29325 1.47546 0.86305 0.77420 0.84043 0.78596 1.21103 1.21732 1.21201 0.91188 0.91617 0.89489 0.87515 0.86106 0.77414 0.90712 0.90909 0.89393 0.90283 0.93346 0.92520 0.90746 0.94217 0.95704 0.90426 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.11 0.97 6.60 -4.04 -0.03 0.94 16 3 N -0.25 -3.17 3.39 -57.37 -0.19 -3.37 16 4 N -0.06 -0.87 13.14 60.35 0.79 -0.08 16 5 N -0.27 -3.95 12.35 30.47 0.38 -3.58 16 6 C -0.01 -0.14 10.43 -17.35 -0.18 -0.32 16 7 C -0.06 -0.82 6.94 -82.34 -0.57 -1.39 16 8 C 0.61 8.52 7.86 -12.61 -0.10 8.42 16 9 O -0.54 -8.49 15.27 5.26 0.08 -8.41 16 10 N -0.60 -7.99 3.43 -173.33 -0.60 -8.58 16 11 C 0.14 1.87 6.87 -4.37 -0.03 1.84 16 12 C -0.12 -1.69 2.16 -92.78 -0.20 -1.89 16 13 H 0.07 0.94 5.07 -51.93 -0.26 0.68 16 14 C -0.12 -1.88 2.28 -90.95 -0.21 -2.09 16 15 H 0.10 1.81 6.54 -51.93 -0.34 1.47 16 16 C 0.10 1.17 5.01 -3.19 -0.02 1.16 16 17 C 0.18 3.01 4.35 -65.86 -0.29 2.72 16 18 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 19 C -0.13 -1.95 5.77 -23.84 -0.14 -2.09 16 20 C -0.09 -1.48 5.60 -22.89 -0.13 -1.61 16 21 C -0.10 -1.63 4.24 -89.51 -0.38 -2.01 16 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 23 C 0.19 4.00 3.95 -1.65 -0.01 3.99 16 24 N -0.60 -13.16 2.25 -159.59 -0.36 -13.52 16 25 C -0.24 -5.96 10.09 -15.06 -0.15 -6.11 16 26 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 27 C 0.00 -0.07 5.27 -17.43 -0.09 -0.16 16 28 N -0.91 -25.18 10.76 55.49 0.60 -24.59 16 29 Si 0.91 21.02 29.57 -169.99 -5.03 16.00 16 30 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 31 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 32 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 33 H 0.07 0.74 8.14 -51.94 -0.42 0.31 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.12 1.16 6.51 -51.93 -0.34 0.82 16 38 H 0.21 2.09 4.82 -52.49 -0.25 1.84 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.98 5.35 -51.93 -0.28 0.71 16 42 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 43 H 0.05 0.62 6.61 -51.93 -0.34 0.28 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 46 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.02 0.59 7.09 -51.93 -0.37 0.22 16 48 H 0.08 1.90 6.73 -51.93 -0.35 1.56 16 49 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -29.98 371.27 -8.00 -37.98 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.13 Total: 2.17 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -2.13 Total: 0.37 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.62 Total: -53.71 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.98 -8.00 -37.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.624 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds